@ai-ecoverse/wasix-python 3.14.2-2

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Files changed (2512) hide show
  1. package/LICENSE +277 -0
  2. package/README.md +22 -0
  3. package/bin/python.wasm +0 -0
  4. package/include/python3.14/Python.h +155 -0
  5. package/include/python3.14/README.rst +14 -0
  6. package/include/python3.14/abstract.h +915 -0
  7. package/include/python3.14/audit.h +30 -0
  8. package/include/python3.14/bltinmodule.h +14 -0
  9. package/include/python3.14/boolobject.h +54 -0
  10. package/include/python3.14/bytearrayobject.h +44 -0
  11. package/include/python3.14/bytesobject.h +66 -0
  12. package/include/python3.14/ceval.h +145 -0
  13. package/include/python3.14/codecs.h +176 -0
  14. package/include/python3.14/compile.h +22 -0
  15. package/include/python3.14/complexobject.h +30 -0
  16. package/include/python3.14/cpython/abstract.h +104 -0
  17. package/include/python3.14/cpython/audit.h +8 -0
  18. package/include/python3.14/cpython/bytearrayobject.h +38 -0
  19. package/include/python3.14/cpython/bytesobject.h +42 -0
  20. package/include/python3.14/cpython/cellobject.h +50 -0
  21. package/include/python3.14/cpython/ceval.h +43 -0
  22. package/include/python3.14/cpython/classobject.h +71 -0
  23. package/include/python3.14/cpython/code.h +340 -0
  24. package/include/python3.14/cpython/compile.h +50 -0
  25. package/include/python3.14/cpython/complexobject.h +33 -0
  26. package/include/python3.14/cpython/context.h +107 -0
  27. package/include/python3.14/cpython/critical_section.h +154 -0
  28. package/include/python3.14/cpython/descrobject.h +62 -0
  29. package/include/python3.14/cpython/dictobject.h +105 -0
  30. package/include/python3.14/cpython/fileobject.h +16 -0
  31. package/include/python3.14/cpython/fileutils.h +16 -0
  32. package/include/python3.14/cpython/floatobject.h +27 -0
  33. package/include/python3.14/cpython/frameobject.h +35 -0
  34. package/include/python3.14/cpython/funcobject.h +185 -0
  35. package/include/python3.14/cpython/genobject.h +56 -0
  36. package/include/python3.14/cpython/import.h +30 -0
  37. package/include/python3.14/cpython/initconfig.h +334 -0
  38. package/include/python3.14/cpython/listobject.h +53 -0
  39. package/include/python3.14/cpython/lock.h +74 -0
  40. package/include/python3.14/cpython/longintrepr.h +184 -0
  41. package/include/python3.14/cpython/longobject.h +89 -0
  42. package/include/python3.14/cpython/memoryobject.h +50 -0
  43. package/include/python3.14/cpython/methodobject.h +66 -0
  44. package/include/python3.14/cpython/modsupport.h +26 -0
  45. package/include/python3.14/cpython/monitoring.h +269 -0
  46. package/include/python3.14/cpython/object.h +493 -0
  47. package/include/python3.14/cpython/objimpl.h +104 -0
  48. package/include/python3.14/cpython/odictobject.h +43 -0
  49. package/include/python3.14/cpython/picklebufobject.h +31 -0
  50. package/include/python3.14/cpython/pthread_stubs.h +105 -0
  51. package/include/python3.14/cpython/pyatomic.h +614 -0
  52. package/include/python3.14/cpython/pyatomic_gcc.h +615 -0
  53. package/include/python3.14/cpython/pyatomic_msc.h +1197 -0
  54. package/include/python3.14/cpython/pyatomic_std.h +1112 -0
  55. package/include/python3.14/cpython/pyctype.h +39 -0
  56. package/include/python3.14/cpython/pydebug.h +38 -0
  57. package/include/python3.14/cpython/pyerrors.h +132 -0
  58. package/include/python3.14/cpython/pyfpe.h +15 -0
  59. package/include/python3.14/cpython/pyframe.h +45 -0
  60. package/include/python3.14/cpython/pyhash.h +54 -0
  61. package/include/python3.14/cpython/pylifecycle.h +89 -0
  62. package/include/python3.14/cpython/pymem.h +84 -0
  63. package/include/python3.14/cpython/pystate.h +275 -0
  64. package/include/python3.14/cpython/pystats.h +194 -0
  65. package/include/python3.14/cpython/pythonrun.h +96 -0
  66. package/include/python3.14/cpython/pythread.h +43 -0
  67. package/include/python3.14/cpython/pytime.h +27 -0
  68. package/include/python3.14/cpython/setobject.h +71 -0
  69. package/include/python3.14/cpython/traceback.h +13 -0
  70. package/include/python3.14/cpython/tracemalloc.h +32 -0
  71. package/include/python3.14/cpython/tupleobject.h +40 -0
  72. package/include/python3.14/cpython/unicodeobject.h +773 -0
  73. package/include/python3.14/cpython/warnings.h +20 -0
  74. package/include/python3.14/cpython/weakrefobject.h +66 -0
  75. package/include/python3.14/critical_section.h +16 -0
  76. package/include/python3.14/datetime.h +267 -0
  77. package/include/python3.14/descrobject.h +100 -0
  78. package/include/python3.14/dictobject.h +108 -0
  79. package/include/python3.14/dynamic_annotations.h +499 -0
  80. package/include/python3.14/enumobject.h +17 -0
  81. package/include/python3.14/errcode.h +45 -0
  82. package/include/python3.14/exports.h +105 -0
  83. package/include/python3.14/fileobject.h +41 -0
  84. package/include/python3.14/fileutils.h +62 -0
  85. package/include/python3.14/floatobject.h +54 -0
  86. package/include/python3.14/frameobject.h +20 -0
  87. package/include/python3.14/genericaliasobject.h +14 -0
  88. package/include/python3.14/import.h +103 -0
  89. package/include/python3.14/internal/mimalloc/mimalloc/atomic.h +392 -0
  90. package/include/python3.14/internal/mimalloc/mimalloc/internal.h +969 -0
  91. package/include/python3.14/internal/mimalloc/mimalloc/prim.h +329 -0
  92. package/include/python3.14/internal/mimalloc/mimalloc/track.h +147 -0
  93. package/include/python3.14/internal/mimalloc/mimalloc/types.h +721 -0
  94. package/include/python3.14/internal/mimalloc/mimalloc.h +565 -0
  95. package/include/python3.14/internal/pycore_abstract.h +61 -0
  96. package/include/python3.14/internal/pycore_asdl.h +112 -0
  97. package/include/python3.14/internal/pycore_ast.h +945 -0
  98. package/include/python3.14/internal/pycore_ast_state.h +271 -0
  99. package/include/python3.14/internal/pycore_atexit.h +31 -0
  100. package/include/python3.14/internal/pycore_audit.h +35 -0
  101. package/include/python3.14/internal/pycore_backoff.h +133 -0
  102. package/include/python3.14/internal/pycore_bitutils.h +186 -0
  103. package/include/python3.14/internal/pycore_blocks_output_buffer.h +321 -0
  104. package/include/python3.14/internal/pycore_brc.h +73 -0
  105. package/include/python3.14/internal/pycore_bytes_methods.h +82 -0
  106. package/include/python3.14/internal/pycore_bytesobject.h +149 -0
  107. package/include/python3.14/internal/pycore_c_array.h +39 -0
  108. package/include/python3.14/internal/pycore_call.h +206 -0
  109. package/include/python3.14/internal/pycore_capsule.h +17 -0
  110. package/include/python3.14/internal/pycore_cell.h +75 -0
  111. package/include/python3.14/internal/pycore_ceval.h +390 -0
  112. package/include/python3.14/internal/pycore_ceval_state.h +48 -0
  113. package/include/python3.14/internal/pycore_code.h +671 -0
  114. package/include/python3.14/internal/pycore_codecs.h +76 -0
  115. package/include/python3.14/internal/pycore_compile.h +230 -0
  116. package/include/python3.14/internal/pycore_complexobject.h +34 -0
  117. package/include/python3.14/internal/pycore_condvar.h +93 -0
  118. package/include/python3.14/internal/pycore_context.h +59 -0
  119. package/include/python3.14/internal/pycore_critical_section.h +237 -0
  120. package/include/python3.14/internal/pycore_crossinterp.h +406 -0
  121. package/include/python3.14/internal/pycore_crossinterp_data_registry.h +41 -0
  122. package/include/python3.14/internal/pycore_debug_offsets.h +379 -0
  123. package/include/python3.14/internal/pycore_descrobject.h +28 -0
  124. package/include/python3.14/internal/pycore_dict.h +410 -0
  125. package/include/python3.14/internal/pycore_dict_state.h +28 -0
  126. package/include/python3.14/internal/pycore_dtoa.h +40 -0
  127. package/include/python3.14/internal/pycore_emscripten_signal.h +30 -0
  128. package/include/python3.14/internal/pycore_emscripten_trampoline.h +70 -0
  129. package/include/python3.14/internal/pycore_exceptions.h +40 -0
  130. package/include/python3.14/internal/pycore_faulthandler.h +100 -0
  131. package/include/python3.14/internal/pycore_fileutils.h +320 -0
  132. package/include/python3.14/internal/pycore_fileutils_windows.h +98 -0
  133. package/include/python3.14/internal/pycore_floatobject.h +49 -0
  134. package/include/python3.14/internal/pycore_flowgraph.h +47 -0
  135. package/include/python3.14/internal/pycore_format.h +27 -0
  136. package/include/python3.14/internal/pycore_frame.h +61 -0
  137. package/include/python3.14/internal/pycore_freelist.h +111 -0
  138. package/include/python3.14/internal/pycore_freelist_state.h +70 -0
  139. package/include/python3.14/internal/pycore_function.h +53 -0
  140. package/include/python3.14/internal/pycore_gc.h +378 -0
  141. package/include/python3.14/internal/pycore_genobject.h +43 -0
  142. package/include/python3.14/internal/pycore_getopt.h +22 -0
  143. package/include/python3.14/internal/pycore_gil.h +66 -0
  144. package/include/python3.14/internal/pycore_global_objects.h +34 -0
  145. package/include/python3.14/internal/pycore_global_objects_fini_generated.h +1592 -0
  146. package/include/python3.14/internal/pycore_global_strings.h +854 -0
  147. package/include/python3.14/internal/pycore_hamt.h +113 -0
  148. package/include/python3.14/internal/pycore_hashtable.h +150 -0
  149. package/include/python3.14/internal/pycore_import.h +141 -0
  150. package/include/python3.14/internal/pycore_importdl.h +139 -0
  151. package/include/python3.14/internal/pycore_index_pool.h +36 -0
  152. package/include/python3.14/internal/pycore_initconfig.h +197 -0
  153. package/include/python3.14/internal/pycore_instruction_sequence.h +83 -0
  154. package/include/python3.14/internal/pycore_instruments.h +127 -0
  155. package/include/python3.14/internal/pycore_interp.h +109 -0
  156. package/include/python3.14/internal/pycore_interp_structs.h +977 -0
  157. package/include/python3.14/internal/pycore_interpframe.h +401 -0
  158. package/include/python3.14/internal/pycore_interpframe_structs.h +95 -0
  159. package/include/python3.14/internal/pycore_interpolation.h +26 -0
  160. package/include/python3.14/internal/pycore_intrinsics.h +51 -0
  161. package/include/python3.14/internal/pycore_jit.h +29 -0
  162. package/include/python3.14/internal/pycore_list.h +81 -0
  163. package/include/python3.14/internal/pycore_llist.h +106 -0
  164. package/include/python3.14/internal/pycore_lock.h +236 -0
  165. package/include/python3.14/internal/pycore_long.h +319 -0
  166. package/include/python3.14/internal/pycore_magic_number.h +305 -0
  167. package/include/python3.14/internal/pycore_memoryobject.h +20 -0
  168. package/include/python3.14/internal/pycore_mimalloc.h +69 -0
  169. package/include/python3.14/internal/pycore_modsupport.h +99 -0
  170. package/include/python3.14/internal/pycore_moduleobject.h +62 -0
  171. package/include/python3.14/internal/pycore_namespace.h +21 -0
  172. package/include/python3.14/internal/pycore_object.h +1029 -0
  173. package/include/python3.14/internal/pycore_object_alloc.h +71 -0
  174. package/include/python3.14/internal/pycore_object_deferred.h +32 -0
  175. package/include/python3.14/internal/pycore_object_stack.h +95 -0
  176. package/include/python3.14/internal/pycore_object_state.h +49 -0
  177. package/include/python3.14/internal/pycore_obmalloc.h +702 -0
  178. package/include/python3.14/internal/pycore_obmalloc_init.h +66 -0
  179. package/include/python3.14/internal/pycore_opcode_metadata.h +2117 -0
  180. package/include/python3.14/internal/pycore_opcode_utils.h +90 -0
  181. package/include/python3.14/internal/pycore_optimizer.h +318 -0
  182. package/include/python3.14/internal/pycore_parking_lot.h +97 -0
  183. package/include/python3.14/internal/pycore_parser.h +78 -0
  184. package/include/python3.14/internal/pycore_pathconfig.h +26 -0
  185. package/include/python3.14/internal/pycore_pyarena.h +68 -0
  186. package/include/python3.14/internal/pycore_pyatomic_ft_wrappers.h +174 -0
  187. package/include/python3.14/internal/pycore_pybuffer.h +21 -0
  188. package/include/python3.14/internal/pycore_pyerrors.h +213 -0
  189. package/include/python3.14/internal/pycore_pyhash.h +91 -0
  190. package/include/python3.14/internal/pycore_pylifecycle.h +136 -0
  191. package/include/python3.14/internal/pycore_pymath.h +205 -0
  192. package/include/python3.14/internal/pycore_pymem.h +145 -0
  193. package/include/python3.14/internal/pycore_pymem_init.h +103 -0
  194. package/include/python3.14/internal/pycore_pystate.h +339 -0
  195. package/include/python3.14/internal/pycore_pystats.h +21 -0
  196. package/include/python3.14/internal/pycore_pythonrun.h +68 -0
  197. package/include/python3.14/internal/pycore_pythread.h +172 -0
  198. package/include/python3.14/internal/pycore_qsbr.h +172 -0
  199. package/include/python3.14/internal/pycore_range.h +21 -0
  200. package/include/python3.14/internal/pycore_runtime.h +63 -0
  201. package/include/python3.14/internal/pycore_runtime_init.h +239 -0
  202. package/include/python3.14/internal/pycore_runtime_init_generated.h +1589 -0
  203. package/include/python3.14/internal/pycore_runtime_structs.h +310 -0
  204. package/include/python3.14/internal/pycore_semaphore.h +67 -0
  205. package/include/python3.14/internal/pycore_setobject.h +41 -0
  206. package/include/python3.14/internal/pycore_signal.h +108 -0
  207. package/include/python3.14/internal/pycore_sliceobject.h +20 -0
  208. package/include/python3.14/internal/pycore_stackref.h +791 -0
  209. package/include/python3.14/internal/pycore_stats.h +97 -0
  210. package/include/python3.14/internal/pycore_strhex.h +39 -0
  211. package/include/python3.14/internal/pycore_structs.h +88 -0
  212. package/include/python3.14/internal/pycore_structseq.h +40 -0
  213. package/include/python3.14/internal/pycore_symtable.h +201 -0
  214. package/include/python3.14/internal/pycore_sysmodule.h +32 -0
  215. package/include/python3.14/internal/pycore_template.h +26 -0
  216. package/include/python3.14/internal/pycore_time.h +334 -0
  217. package/include/python3.14/internal/pycore_token.h +110 -0
  218. package/include/python3.14/internal/pycore_traceback.h +111 -0
  219. package/include/python3.14/internal/pycore_tracemalloc.h +164 -0
  220. package/include/python3.14/internal/pycore_tstate.h +88 -0
  221. package/include/python3.14/internal/pycore_tuple.h +75 -0
  222. package/include/python3.14/internal/pycore_typedefs.h +18 -0
  223. package/include/python3.14/internal/pycore_typeobject.h +155 -0
  224. package/include/python3.14/internal/pycore_typevarobject.h +28 -0
  225. package/include/python3.14/internal/pycore_ucnhash.h +36 -0
  226. package/include/python3.14/internal/pycore_unicodeobject.h +308 -0
  227. package/include/python3.14/internal/pycore_unicodeobject_generated.h +3132 -0
  228. package/include/python3.14/internal/pycore_unionobject.h +26 -0
  229. package/include/python3.14/internal/pycore_uniqueid.h +57 -0
  230. package/include/python3.14/internal/pycore_uop_ids.h +335 -0
  231. package/include/python3.14/internal/pycore_uop_metadata.h +1204 -0
  232. package/include/python3.14/internal/pycore_warnings.h +21 -0
  233. package/include/python3.14/internal/pycore_weakref.h +133 -0
  234. package/include/python3.14/intrcheck.h +23 -0
  235. package/include/python3.14/iterobject.h +24 -0
  236. package/include/python3.14/listobject.h +55 -0
  237. package/include/python3.14/lock.h +16 -0
  238. package/include/python3.14/longobject.h +178 -0
  239. package/include/python3.14/marshal.h +31 -0
  240. package/include/python3.14/memoryobject.h +34 -0
  241. package/include/python3.14/methodobject.h +146 -0
  242. package/include/python3.14/modsupport.h +146 -0
  243. package/include/python3.14/moduleobject.h +122 -0
  244. package/include/python3.14/monitoring.h +18 -0
  245. package/include/python3.14/object.h +828 -0
  246. package/include/python3.14/objimpl.h +211 -0
  247. package/include/python3.14/opcode.h +43 -0
  248. package/include/python3.14/opcode_ids.h +259 -0
  249. package/include/python3.14/osdefs.h +57 -0
  250. package/include/python3.14/osmodule.h +17 -0
  251. package/include/python3.14/patchlevel.h +49 -0
  252. package/include/python3.14/py_curses.h +117 -0
  253. package/include/python3.14/pyatomic.h +16 -0
  254. package/include/python3.14/pybuffer.h +145 -0
  255. package/include/python3.14/pycapsule.h +58 -0
  256. package/include/python3.14/pyconfig.h +2087 -0
  257. package/include/python3.14/pydtrace.d +22 -0
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  259. package/include/python3.14/pyerrors.h +335 -0
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  261. package/include/python3.14/pyframe.h +26 -0
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  263. package/include/python3.14/pylifecycle.h +80 -0
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  268. package/include/python3.14/pyport.h +710 -0
  269. package/include/python3.14/pystate.h +132 -0
  270. package/include/python3.14/pystats.h +28 -0
  271. package/include/python3.14/pystrcmp.h +23 -0
  272. package/include/python3.14/pystrtod.h +37 -0
  273. package/include/python3.14/pythonrun.h +42 -0
  274. package/include/python3.14/pythread.h +131 -0
  275. package/include/python3.14/pytypedefs.h +30 -0
  276. package/include/python3.14/rangeobject.h +27 -0
  277. package/include/python3.14/refcount.h +555 -0
  278. package/include/python3.14/setobject.h +49 -0
  279. package/include/python3.14/sliceobject.h +69 -0
  280. package/include/python3.14/structmember.h +56 -0
  281. package/include/python3.14/structseq.h +46 -0
  282. package/include/python3.14/sysmodule.h +27 -0
  283. package/include/python3.14/traceback.h +26 -0
  284. package/include/python3.14/tupleobject.h +46 -0
  285. package/include/python3.14/typeslots.h +96 -0
  286. package/include/python3.14/unicodeobject.h +1029 -0
  287. package/include/python3.14/warnings.h +45 -0
  288. package/include/python3.14/weakrefobject.h +46 -0
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  293. package/lib/python3.14/__future__.py +147 -0
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  2512. package/package.json +62 -0
@@ -0,0 +1,1879 @@
1
+ """
2
+ Basic statistics module.
3
+
4
+ This module provides functions for calculating statistics of data, including
5
+ averages, variance, and standard deviation.
6
+
7
+ Calculating averages
8
+ --------------------
9
+
10
+ ================== ==================================================
11
+ Function Description
12
+ ================== ==================================================
13
+ mean Arithmetic mean (average) of data.
14
+ fmean Fast, floating-point arithmetic mean.
15
+ geometric_mean Geometric mean of data.
16
+ harmonic_mean Harmonic mean of data.
17
+ median Median (middle value) of data.
18
+ median_low Low median of data.
19
+ median_high High median of data.
20
+ median_grouped Median, or 50th percentile, of grouped data.
21
+ mode Mode (most common value) of data.
22
+ multimode List of modes (most common values of data).
23
+ quantiles Divide data into intervals with equal probability.
24
+ ================== ==================================================
25
+
26
+ Calculate the arithmetic mean ("the average") of data:
27
+
28
+ >>> mean([-1.0, 2.5, 3.25, 5.75])
29
+ 2.625
30
+
31
+
32
+ Calculate the standard median of discrete data:
33
+
34
+ >>> median([2, 3, 4, 5])
35
+ 3.5
36
+
37
+
38
+ Calculate the median, or 50th percentile, of data grouped into class intervals
39
+ centred on the data values provided. E.g. if your data points are rounded to
40
+ the nearest whole number:
41
+
42
+ >>> median_grouped([2, 2, 3, 3, 3, 4]) #doctest: +ELLIPSIS
43
+ 2.8333333333...
44
+
45
+ This should be interpreted in this way: you have two data points in the class
46
+ interval 1.5-2.5, three data points in the class interval 2.5-3.5, and one in
47
+ the class interval 3.5-4.5. The median of these data points is 2.8333...
48
+
49
+
50
+ Calculating variability or spread
51
+ ---------------------------------
52
+
53
+ ================== =============================================
54
+ Function Description
55
+ ================== =============================================
56
+ pvariance Population variance of data.
57
+ variance Sample variance of data.
58
+ pstdev Population standard deviation of data.
59
+ stdev Sample standard deviation of data.
60
+ ================== =============================================
61
+
62
+ Calculate the standard deviation of sample data:
63
+
64
+ >>> stdev([2.5, 3.25, 5.5, 11.25, 11.75]) #doctest: +ELLIPSIS
65
+ 4.38961843444...
66
+
67
+ If you have previously calculated the mean, you can pass it as the optional
68
+ second argument to the four "spread" functions to avoid recalculating it:
69
+
70
+ >>> data = [1, 2, 2, 4, 4, 4, 5, 6]
71
+ >>> mu = mean(data)
72
+ >>> pvariance(data, mu)
73
+ 2.5
74
+
75
+
76
+ Statistics for relations between two inputs
77
+ -------------------------------------------
78
+
79
+ ================== ====================================================
80
+ Function Description
81
+ ================== ====================================================
82
+ covariance Sample covariance for two variables.
83
+ correlation Pearson's correlation coefficient for two variables.
84
+ linear_regression Intercept and slope for simple linear regression.
85
+ ================== ====================================================
86
+
87
+ Calculate covariance, Pearson's correlation, and simple linear regression
88
+ for two inputs:
89
+
90
+ >>> x = [1, 2, 3, 4, 5, 6, 7, 8, 9]
91
+ >>> y = [1, 2, 3, 1, 2, 3, 1, 2, 3]
92
+ >>> covariance(x, y)
93
+ 0.75
94
+ >>> correlation(x, y) #doctest: +ELLIPSIS
95
+ 0.31622776601...
96
+ >>> linear_regression(x, y) #doctest:
97
+ LinearRegression(slope=0.1, intercept=1.5)
98
+
99
+
100
+ Exceptions
101
+ ----------
102
+
103
+ A single exception is defined: StatisticsError is a subclass of ValueError.
104
+
105
+ """
106
+
107
+ __all__ = [
108
+ 'NormalDist',
109
+ 'StatisticsError',
110
+ 'correlation',
111
+ 'covariance',
112
+ 'fmean',
113
+ 'geometric_mean',
114
+ 'harmonic_mean',
115
+ 'kde',
116
+ 'kde_random',
117
+ 'linear_regression',
118
+ 'mean',
119
+ 'median',
120
+ 'median_grouped',
121
+ 'median_high',
122
+ 'median_low',
123
+ 'mode',
124
+ 'multimode',
125
+ 'pstdev',
126
+ 'pvariance',
127
+ 'quantiles',
128
+ 'stdev',
129
+ 'variance',
130
+ ]
131
+
132
+ import math
133
+ import numbers
134
+ import random
135
+ import sys
136
+
137
+ from fractions import Fraction
138
+ from decimal import Decimal
139
+ from itertools import count, groupby, repeat
140
+ from bisect import bisect_left, bisect_right
141
+ from math import hypot, sqrt, fabs, exp, erfc, tau, log, fsum, sumprod
142
+ from math import isfinite, isinf, pi, cos, sin, tan, cosh, asin, atan, acos
143
+ from functools import reduce
144
+ from operator import itemgetter
145
+ from collections import Counter, namedtuple, defaultdict
146
+
147
+ _SQRT2 = sqrt(2.0)
148
+ _random = random
149
+
150
+ ## Exceptions ##############################################################
151
+
152
+ class StatisticsError(ValueError):
153
+ pass
154
+
155
+
156
+ ## Measures of central tendency (averages) #################################
157
+
158
+ def mean(data):
159
+ """Return the sample arithmetic mean of data.
160
+
161
+ >>> mean([1, 2, 3, 4, 4])
162
+ 2.8
163
+
164
+ >>> from fractions import Fraction as F
165
+ >>> mean([F(3, 7), F(1, 21), F(5, 3), F(1, 3)])
166
+ Fraction(13, 21)
167
+
168
+ >>> from decimal import Decimal as D
169
+ >>> mean([D("0.5"), D("0.75"), D("0.625"), D("0.375")])
170
+ Decimal('0.5625')
171
+
172
+ If ``data`` is empty, StatisticsError will be raised.
173
+
174
+ """
175
+ T, total, n = _sum(data)
176
+ if n < 1:
177
+ raise StatisticsError('mean requires at least one data point')
178
+ return _convert(total / n, T)
179
+
180
+
181
+ def fmean(data, weights=None):
182
+ """Convert data to floats and compute the arithmetic mean.
183
+
184
+ This runs faster than the mean() function and it always returns a float.
185
+ If the input dataset is empty, it raises a StatisticsError.
186
+
187
+ >>> fmean([3.5, 4.0, 5.25])
188
+ 4.25
189
+
190
+ """
191
+ if weights is None:
192
+
193
+ try:
194
+ n = len(data)
195
+ except TypeError:
196
+ # Handle iterators that do not define __len__().
197
+ counter = count()
198
+ total = fsum(map(itemgetter(0), zip(data, counter)))
199
+ n = next(counter)
200
+ else:
201
+ total = fsum(data)
202
+
203
+ if not n:
204
+ raise StatisticsError('fmean requires at least one data point')
205
+
206
+ return total / n
207
+
208
+ if not isinstance(weights, (list, tuple)):
209
+ weights = list(weights)
210
+
211
+ try:
212
+ num = sumprod(data, weights)
213
+ except ValueError:
214
+ raise StatisticsError('data and weights must be the same length')
215
+
216
+ den = fsum(weights)
217
+
218
+ if not den:
219
+ raise StatisticsError('sum of weights must be non-zero')
220
+
221
+ return num / den
222
+
223
+
224
+ def geometric_mean(data):
225
+ """Convert data to floats and compute the geometric mean.
226
+
227
+ Raises a StatisticsError if the input dataset is empty
228
+ or if it contains a negative value.
229
+
230
+ Returns zero if the product of inputs is zero.
231
+
232
+ No special efforts are made to achieve exact results.
233
+ (However, this may change in the future.)
234
+
235
+ >>> round(geometric_mean([54, 24, 36]), 9)
236
+ 36.0
237
+
238
+ """
239
+ n = 0
240
+ found_zero = False
241
+
242
+ def count_positive(iterable):
243
+ nonlocal n, found_zero
244
+ for n, x in enumerate(iterable, start=1):
245
+ if x > 0.0 or math.isnan(x):
246
+ yield x
247
+ elif x == 0.0:
248
+ found_zero = True
249
+ else:
250
+ raise StatisticsError('No negative inputs allowed', x)
251
+
252
+ total = fsum(map(log, count_positive(data)))
253
+
254
+ if not n:
255
+ raise StatisticsError('Must have a non-empty dataset')
256
+ if math.isnan(total):
257
+ return math.nan
258
+ if found_zero:
259
+ return math.nan if total == math.inf else 0.0
260
+
261
+ return exp(total / n)
262
+
263
+
264
+ def harmonic_mean(data, weights=None):
265
+ """Return the harmonic mean of data.
266
+
267
+ The harmonic mean is the reciprocal of the arithmetic mean of the
268
+ reciprocals of the data. It can be used for averaging ratios or
269
+ rates, for example speeds.
270
+
271
+ Suppose a car travels 40 km/hr for 5 km and then speeds-up to
272
+ 60 km/hr for another 5 km. What is the average speed?
273
+
274
+ >>> harmonic_mean([40, 60])
275
+ 48.0
276
+
277
+ Suppose a car travels 40 km/hr for 5 km, and when traffic clears,
278
+ speeds-up to 60 km/hr for the remaining 30 km of the journey. What
279
+ is the average speed?
280
+
281
+ >>> harmonic_mean([40, 60], weights=[5, 30])
282
+ 56.0
283
+
284
+ If ``data`` is empty, or any element is less than zero,
285
+ ``harmonic_mean`` will raise ``StatisticsError``.
286
+
287
+ """
288
+ if iter(data) is data:
289
+ data = list(data)
290
+
291
+ errmsg = 'harmonic mean does not support negative values'
292
+
293
+ n = len(data)
294
+ if n < 1:
295
+ raise StatisticsError('harmonic_mean requires at least one data point')
296
+ elif n == 1 and weights is None:
297
+ x = data[0]
298
+ if isinstance(x, (numbers.Real, Decimal)):
299
+ if x < 0:
300
+ raise StatisticsError(errmsg)
301
+ return x
302
+ else:
303
+ raise TypeError('unsupported type')
304
+
305
+ if weights is None:
306
+ weights = repeat(1, n)
307
+ sum_weights = n
308
+ else:
309
+ if iter(weights) is weights:
310
+ weights = list(weights)
311
+ if len(weights) != n:
312
+ raise StatisticsError('Number of weights does not match data size')
313
+ _, sum_weights, _ = _sum(w for w in _fail_neg(weights, errmsg))
314
+
315
+ try:
316
+ data = _fail_neg(data, errmsg)
317
+ T, total, count = _sum(w / x if w else 0 for w, x in zip(weights, data))
318
+ except ZeroDivisionError:
319
+ return 0
320
+
321
+ if total <= 0:
322
+ raise StatisticsError('Weighted sum must be positive')
323
+
324
+ return _convert(sum_weights / total, T)
325
+
326
+
327
+ def median(data):
328
+ """Return the median (middle value) of numeric data.
329
+
330
+ When the number of data points is odd, return the middle data point.
331
+ When the number of data points is even, the median is interpolated by
332
+ taking the average of the two middle values:
333
+
334
+ >>> median([1, 3, 5])
335
+ 3
336
+ >>> median([1, 3, 5, 7])
337
+ 4.0
338
+
339
+ """
340
+ data = sorted(data)
341
+ n = len(data)
342
+ if n == 0:
343
+ raise StatisticsError("no median for empty data")
344
+ if n % 2 == 1:
345
+ return data[n // 2]
346
+ else:
347
+ i = n // 2
348
+ return (data[i - 1] + data[i]) / 2
349
+
350
+
351
+ def median_low(data):
352
+ """Return the low median of numeric data.
353
+
354
+ When the number of data points is odd, the middle value is returned.
355
+ When it is even, the smaller of the two middle values is returned.
356
+
357
+ >>> median_low([1, 3, 5])
358
+ 3
359
+ >>> median_low([1, 3, 5, 7])
360
+ 3
361
+
362
+ """
363
+ # Potentially the sorting step could be replaced with a quickselect.
364
+ # However, it would require an excellent implementation to beat our
365
+ # highly optimized builtin sort.
366
+ data = sorted(data)
367
+ n = len(data)
368
+ if n == 0:
369
+ raise StatisticsError("no median for empty data")
370
+ if n % 2 == 1:
371
+ return data[n // 2]
372
+ else:
373
+ return data[n // 2 - 1]
374
+
375
+
376
+ def median_high(data):
377
+ """Return the high median of data.
378
+
379
+ When the number of data points is odd, the middle value is returned.
380
+ When it is even, the larger of the two middle values is returned.
381
+
382
+ >>> median_high([1, 3, 5])
383
+ 3
384
+ >>> median_high([1, 3, 5, 7])
385
+ 5
386
+
387
+ """
388
+ data = sorted(data)
389
+ n = len(data)
390
+ if n == 0:
391
+ raise StatisticsError("no median for empty data")
392
+ return data[n // 2]
393
+
394
+
395
+ def median_grouped(data, interval=1.0):
396
+ """Estimates the median for numeric data binned around the midpoints
397
+ of consecutive, fixed-width intervals.
398
+
399
+ The *data* can be any iterable of numeric data with each value being
400
+ exactly the midpoint of a bin. At least one value must be present.
401
+
402
+ The *interval* is width of each bin.
403
+
404
+ For example, demographic information may have been summarized into
405
+ consecutive ten-year age groups with each group being represented
406
+ by the 5-year midpoints of the intervals:
407
+
408
+ >>> demographics = Counter({
409
+ ... 25: 172, # 20 to 30 years old
410
+ ... 35: 484, # 30 to 40 years old
411
+ ... 45: 387, # 40 to 50 years old
412
+ ... 55: 22, # 50 to 60 years old
413
+ ... 65: 6, # 60 to 70 years old
414
+ ... })
415
+
416
+ The 50th percentile (median) is the 536th person out of the 1071
417
+ member cohort. That person is in the 30 to 40 year old age group.
418
+
419
+ The regular median() function would assume that everyone in the
420
+ tricenarian age group was exactly 35 years old. A more tenable
421
+ assumption is that the 484 members of that age group are evenly
422
+ distributed between 30 and 40. For that, we use median_grouped().
423
+
424
+ >>> data = list(demographics.elements())
425
+ >>> median(data)
426
+ 35
427
+ >>> round(median_grouped(data, interval=10), 1)
428
+ 37.5
429
+
430
+ The caller is responsible for making sure the data points are separated
431
+ by exact multiples of *interval*. This is essential for getting a
432
+ correct result. The function does not check this precondition.
433
+
434
+ Inputs may be any numeric type that can be coerced to a float during
435
+ the interpolation step.
436
+
437
+ """
438
+ data = sorted(data)
439
+ n = len(data)
440
+ if not n:
441
+ raise StatisticsError("no median for empty data")
442
+
443
+ # Find the value at the midpoint. Remember this corresponds to the
444
+ # midpoint of the class interval.
445
+ x = data[n // 2]
446
+
447
+ # Using O(log n) bisection, find where all the x values occur in the data.
448
+ # All x will lie within data[i:j].
449
+ i = bisect_left(data, x)
450
+ j = bisect_right(data, x, lo=i)
451
+
452
+ # Coerce to floats, raising a TypeError if not possible
453
+ try:
454
+ interval = float(interval)
455
+ x = float(x)
456
+ except ValueError:
457
+ raise TypeError(f'Value cannot be converted to a float')
458
+
459
+ # Interpolate the median using the formula found at:
460
+ # https://www.cuemath.com/data/median-of-grouped-data/
461
+ L = x - interval / 2.0 # Lower limit of the median interval
462
+ cf = i # Cumulative frequency of the preceding interval
463
+ f = j - i # Number of elements in the median internal
464
+ return L + interval * (n / 2 - cf) / f
465
+
466
+
467
+ def mode(data):
468
+ """Return the most common data point from discrete or nominal data.
469
+
470
+ ``mode`` assumes discrete data, and returns a single value. This is the
471
+ standard treatment of the mode as commonly taught in schools:
472
+
473
+ >>> mode([1, 1, 2, 3, 3, 3, 3, 4])
474
+ 3
475
+
476
+ This also works with nominal (non-numeric) data:
477
+
478
+ >>> mode(["red", "blue", "blue", "red", "green", "red", "red"])
479
+ 'red'
480
+
481
+ If there are multiple modes with same frequency, return the first one
482
+ encountered:
483
+
484
+ >>> mode(['red', 'red', 'green', 'blue', 'blue'])
485
+ 'red'
486
+
487
+ If *data* is empty, ``mode``, raises StatisticsError.
488
+
489
+ """
490
+ pairs = Counter(iter(data)).most_common(1)
491
+ try:
492
+ return pairs[0][0]
493
+ except IndexError:
494
+ raise StatisticsError('no mode for empty data') from None
495
+
496
+
497
+ def multimode(data):
498
+ """Return a list of the most frequently occurring values.
499
+
500
+ Will return more than one result if there are multiple modes
501
+ or an empty list if *data* is empty.
502
+
503
+ >>> multimode('aabbbbbbbbcc')
504
+ ['b']
505
+ >>> multimode('aabbbbccddddeeffffgg')
506
+ ['b', 'd', 'f']
507
+ >>> multimode('')
508
+ []
509
+
510
+ """
511
+ counts = Counter(iter(data))
512
+ if not counts:
513
+ return []
514
+ maxcount = max(counts.values())
515
+ return [value for value, count in counts.items() if count == maxcount]
516
+
517
+
518
+ ## Measures of spread ######################################################
519
+
520
+ def variance(data, xbar=None):
521
+ """Return the sample variance of data.
522
+
523
+ data should be an iterable of Real-valued numbers, with at least two
524
+ values. The optional argument xbar, if given, should be the mean of
525
+ the data. If it is missing or None, the mean is automatically calculated.
526
+
527
+ Use this function when your data is a sample from a population. To
528
+ calculate the variance from the entire population, see ``pvariance``.
529
+
530
+ Examples:
531
+
532
+ >>> data = [2.75, 1.75, 1.25, 0.25, 0.5, 1.25, 3.5]
533
+ >>> variance(data)
534
+ 1.3720238095238095
535
+
536
+ If you have already calculated the mean of your data, you can pass it as
537
+ the optional second argument ``xbar`` to avoid recalculating it:
538
+
539
+ >>> m = mean(data)
540
+ >>> variance(data, m)
541
+ 1.3720238095238095
542
+
543
+ This function does not check that ``xbar`` is actually the mean of
544
+ ``data``. Giving arbitrary values for ``xbar`` may lead to invalid or
545
+ impossible results.
546
+
547
+ Decimals and Fractions are supported:
548
+
549
+ >>> from decimal import Decimal as D
550
+ >>> variance([D("27.5"), D("30.25"), D("30.25"), D("34.5"), D("41.75")])
551
+ Decimal('31.01875')
552
+
553
+ >>> from fractions import Fraction as F
554
+ >>> variance([F(1, 6), F(1, 2), F(5, 3)])
555
+ Fraction(67, 108)
556
+
557
+ """
558
+ # http://mathworld.wolfram.com/SampleVariance.html
559
+
560
+ T, ss, c, n = _ss(data, xbar)
561
+ if n < 2:
562
+ raise StatisticsError('variance requires at least two data points')
563
+ return _convert(ss / (n - 1), T)
564
+
565
+
566
+ def pvariance(data, mu=None):
567
+ """Return the population variance of ``data``.
568
+
569
+ data should be a sequence or iterable of Real-valued numbers, with at least one
570
+ value. The optional argument mu, if given, should be the mean of
571
+ the data. If it is missing or None, the mean is automatically calculated.
572
+
573
+ Use this function to calculate the variance from the entire population.
574
+ To estimate the variance from a sample, the ``variance`` function is
575
+ usually a better choice.
576
+
577
+ Examples:
578
+
579
+ >>> data = [0.0, 0.25, 0.25, 1.25, 1.5, 1.75, 2.75, 3.25]
580
+ >>> pvariance(data)
581
+ 1.25
582
+
583
+ If you have already calculated the mean of the data, you can pass it as
584
+ the optional second argument to avoid recalculating it:
585
+
586
+ >>> mu = mean(data)
587
+ >>> pvariance(data, mu)
588
+ 1.25
589
+
590
+ Decimals and Fractions are supported:
591
+
592
+ >>> from decimal import Decimal as D
593
+ >>> pvariance([D("27.5"), D("30.25"), D("30.25"), D("34.5"), D("41.75")])
594
+ Decimal('24.815')
595
+
596
+ >>> from fractions import Fraction as F
597
+ >>> pvariance([F(1, 4), F(5, 4), F(1, 2)])
598
+ Fraction(13, 72)
599
+
600
+ """
601
+ # http://mathworld.wolfram.com/Variance.html
602
+
603
+ T, ss, c, n = _ss(data, mu)
604
+ if n < 1:
605
+ raise StatisticsError('pvariance requires at least one data point')
606
+ return _convert(ss / n, T)
607
+
608
+
609
+ def stdev(data, xbar=None):
610
+ """Return the square root of the sample variance.
611
+
612
+ See ``variance`` for arguments and other details.
613
+
614
+ >>> stdev([1.5, 2.5, 2.5, 2.75, 3.25, 4.75])
615
+ 1.0810874155219827
616
+
617
+ """
618
+ T, ss, c, n = _ss(data, xbar)
619
+ if n < 2:
620
+ raise StatisticsError('stdev requires at least two data points')
621
+ mss = ss / (n - 1)
622
+ try:
623
+ mss_numerator = mss.numerator
624
+ mss_denominator = mss.denominator
625
+ except AttributeError:
626
+ raise ValueError('inf or nan encountered in data')
627
+ if issubclass(T, Decimal):
628
+ return _decimal_sqrt_of_frac(mss_numerator, mss_denominator)
629
+ return _float_sqrt_of_frac(mss_numerator, mss_denominator)
630
+
631
+
632
+ def pstdev(data, mu=None):
633
+ """Return the square root of the population variance.
634
+
635
+ See ``pvariance`` for arguments and other details.
636
+
637
+ >>> pstdev([1.5, 2.5, 2.5, 2.75, 3.25, 4.75])
638
+ 0.986893273527251
639
+
640
+ """
641
+ T, ss, c, n = _ss(data, mu)
642
+ if n < 1:
643
+ raise StatisticsError('pstdev requires at least one data point')
644
+ mss = ss / n
645
+ try:
646
+ mss_numerator = mss.numerator
647
+ mss_denominator = mss.denominator
648
+ except AttributeError:
649
+ raise ValueError('inf or nan encountered in data')
650
+ if issubclass(T, Decimal):
651
+ return _decimal_sqrt_of_frac(mss_numerator, mss_denominator)
652
+ return _float_sqrt_of_frac(mss_numerator, mss_denominator)
653
+
654
+
655
+ ## Statistics for relations between two inputs #############################
656
+
657
+ def covariance(x, y, /):
658
+ """Covariance
659
+
660
+ Return the sample covariance of two inputs *x* and *y*. Covariance
661
+ is a measure of the joint variability of two inputs.
662
+
663
+ >>> x = [1, 2, 3, 4, 5, 6, 7, 8, 9]
664
+ >>> y = [1, 2, 3, 1, 2, 3, 1, 2, 3]
665
+ >>> covariance(x, y)
666
+ 0.75
667
+ >>> z = [9, 8, 7, 6, 5, 4, 3, 2, 1]
668
+ >>> covariance(x, z)
669
+ -7.5
670
+ >>> covariance(z, x)
671
+ -7.5
672
+
673
+ """
674
+ # https://en.wikipedia.org/wiki/Covariance
675
+ n = len(x)
676
+ if len(y) != n:
677
+ raise StatisticsError('covariance requires that both inputs have same number of data points')
678
+ if n < 2:
679
+ raise StatisticsError('covariance requires at least two data points')
680
+ xbar = fsum(x) / n
681
+ ybar = fsum(y) / n
682
+ sxy = sumprod((xi - xbar for xi in x), (yi - ybar for yi in y))
683
+ return sxy / (n - 1)
684
+
685
+
686
+ def correlation(x, y, /, *, method='linear'):
687
+ """Pearson's correlation coefficient
688
+
689
+ Return the Pearson's correlation coefficient for two inputs. Pearson's
690
+ correlation coefficient *r* takes values between -1 and +1. It measures
691
+ the strength and direction of a linear relationship.
692
+
693
+ >>> x = [1, 2, 3, 4, 5, 6, 7, 8, 9]
694
+ >>> y = [9, 8, 7, 6, 5, 4, 3, 2, 1]
695
+ >>> correlation(x, x)
696
+ 1.0
697
+ >>> correlation(x, y)
698
+ -1.0
699
+
700
+ If *method* is "ranked", computes Spearman's rank correlation coefficient
701
+ for two inputs. The data is replaced by ranks. Ties are averaged
702
+ so that equal values receive the same rank. The resulting coefficient
703
+ measures the strength of a monotonic relationship.
704
+
705
+ Spearman's rank correlation coefficient is appropriate for ordinal
706
+ data or for continuous data that doesn't meet the linear proportion
707
+ requirement for Pearson's correlation coefficient.
708
+
709
+ """
710
+ # https://en.wikipedia.org/wiki/Pearson_correlation_coefficient
711
+ # https://en.wikipedia.org/wiki/Spearman%27s_rank_correlation_coefficient
712
+ n = len(x)
713
+ if len(y) != n:
714
+ raise StatisticsError('correlation requires that both inputs have same number of data points')
715
+ if n < 2:
716
+ raise StatisticsError('correlation requires at least two data points')
717
+ if method not in {'linear', 'ranked'}:
718
+ raise ValueError(f'Unknown method: {method!r}')
719
+
720
+ if method == 'ranked':
721
+ start = (n - 1) / -2 # Center rankings around zero
722
+ x = _rank(x, start=start)
723
+ y = _rank(y, start=start)
724
+
725
+ else:
726
+ xbar = fsum(x) / n
727
+ ybar = fsum(y) / n
728
+ x = [xi - xbar for xi in x]
729
+ y = [yi - ybar for yi in y]
730
+
731
+ sxy = sumprod(x, y)
732
+ sxx = sumprod(x, x)
733
+ syy = sumprod(y, y)
734
+
735
+ try:
736
+ return sxy / _sqrtprod(sxx, syy)
737
+ except ZeroDivisionError:
738
+ raise StatisticsError('at least one of the inputs is constant')
739
+
740
+
741
+ LinearRegression = namedtuple('LinearRegression', ('slope', 'intercept'))
742
+
743
+
744
+ def linear_regression(x, y, /, *, proportional=False):
745
+ """Slope and intercept for simple linear regression.
746
+
747
+ Return the slope and intercept of simple linear regression
748
+ parameters estimated using ordinary least squares. Simple linear
749
+ regression describes relationship between an independent variable
750
+ *x* and a dependent variable *y* in terms of a linear function:
751
+
752
+ y = slope * x + intercept + noise
753
+
754
+ where *slope* and *intercept* are the regression parameters that are
755
+ estimated, and noise represents the variability of the data that was
756
+ not explained by the linear regression (it is equal to the
757
+ difference between predicted and actual values of the dependent
758
+ variable).
759
+
760
+ The parameters are returned as a named tuple.
761
+
762
+ >>> x = [1, 2, 3, 4, 5]
763
+ >>> noise = NormalDist().samples(5, seed=42)
764
+ >>> y = [3 * x[i] + 2 + noise[i] for i in range(5)]
765
+ >>> linear_regression(x, y) #doctest: +ELLIPSIS
766
+ LinearRegression(slope=3.17495..., intercept=1.00925...)
767
+
768
+ If *proportional* is true, the independent variable *x* and the
769
+ dependent variable *y* are assumed to be directly proportional.
770
+ The data is fit to a line passing through the origin.
771
+
772
+ Since the *intercept* will always be 0.0, the underlying linear
773
+ function simplifies to:
774
+
775
+ y = slope * x + noise
776
+
777
+ >>> y = [3 * x[i] + noise[i] for i in range(5)]
778
+ >>> linear_regression(x, y, proportional=True) #doctest: +ELLIPSIS
779
+ LinearRegression(slope=2.90475..., intercept=0.0)
780
+
781
+ """
782
+ # https://en.wikipedia.org/wiki/Simple_linear_regression
783
+ n = len(x)
784
+ if len(y) != n:
785
+ raise StatisticsError('linear regression requires that both inputs have same number of data points')
786
+ if n < 2:
787
+ raise StatisticsError('linear regression requires at least two data points')
788
+
789
+ if not proportional:
790
+ xbar = fsum(x) / n
791
+ ybar = fsum(y) / n
792
+ x = [xi - xbar for xi in x] # List because used three times below
793
+ y = (yi - ybar for yi in y) # Generator because only used once below
794
+
795
+ sxy = sumprod(x, y) + 0.0 # Add zero to coerce result to a float
796
+ sxx = sumprod(x, x)
797
+
798
+ try:
799
+ slope = sxy / sxx # equivalent to: covariance(x, y) / variance(x)
800
+ except ZeroDivisionError:
801
+ raise StatisticsError('x is constant')
802
+
803
+ intercept = 0.0 if proportional else ybar - slope * xbar
804
+ return LinearRegression(slope=slope, intercept=intercept)
805
+
806
+
807
+ ## Kernel Density Estimation ###############################################
808
+
809
+ _kernel_specs = {}
810
+
811
+ def register(*kernels):
812
+ "Load the kernel's pdf, cdf, invcdf, and support into _kernel_specs."
813
+ def deco(builder):
814
+ spec = dict(zip(('pdf', 'cdf', 'invcdf', 'support'), builder()))
815
+ for kernel in kernels:
816
+ _kernel_specs[kernel] = spec
817
+ return builder
818
+ return deco
819
+
820
+ @register('normal', 'gauss')
821
+ def normal_kernel():
822
+ sqrt2pi = sqrt(2 * pi)
823
+ neg_sqrt2 = -sqrt(2)
824
+ pdf = lambda t: exp(-1/2 * t * t) / sqrt2pi
825
+ cdf = lambda t: 1/2 * erfc(t / neg_sqrt2)
826
+ invcdf = lambda t: _normal_dist_inv_cdf(t, 0.0, 1.0)
827
+ support = None
828
+ return pdf, cdf, invcdf, support
829
+
830
+ @register('logistic')
831
+ def logistic_kernel():
832
+ # 1.0 / (exp(t) + 2.0 + exp(-t))
833
+ pdf = lambda t: 1/2 / (1.0 + cosh(t))
834
+ cdf = lambda t: 1.0 - 1.0 / (exp(t) + 1.0)
835
+ invcdf = lambda p: log(p / (1.0 - p))
836
+ support = None
837
+ return pdf, cdf, invcdf, support
838
+
839
+ @register('sigmoid')
840
+ def sigmoid_kernel():
841
+ # (2/pi) / (exp(t) + exp(-t))
842
+ c1 = 1 / pi
843
+ c2 = 2 / pi
844
+ c3 = pi / 2
845
+ pdf = lambda t: c1 / cosh(t)
846
+ cdf = lambda t: c2 * atan(exp(t))
847
+ invcdf = lambda p: log(tan(p * c3))
848
+ support = None
849
+ return pdf, cdf, invcdf, support
850
+
851
+ @register('rectangular', 'uniform')
852
+ def rectangular_kernel():
853
+ pdf = lambda t: 1/2
854
+ cdf = lambda t: 1/2 * t + 1/2
855
+ invcdf = lambda p: 2.0 * p - 1.0
856
+ support = 1.0
857
+ return pdf, cdf, invcdf, support
858
+
859
+ @register('triangular')
860
+ def triangular_kernel():
861
+ pdf = lambda t: 1.0 - abs(t)
862
+ cdf = lambda t: t*t * (1/2 if t < 0.0 else -1/2) + t + 1/2
863
+ invcdf = lambda p: sqrt(2.0*p) - 1.0 if p < 1/2 else 1.0 - sqrt(2.0 - 2.0*p)
864
+ support = 1.0
865
+ return pdf, cdf, invcdf, support
866
+
867
+ @register('parabolic', 'epanechnikov')
868
+ def parabolic_kernel():
869
+ pdf = lambda t: 3/4 * (1.0 - t * t)
870
+ cdf = lambda t: sumprod((-1/4, 3/4, 1/2), (t**3, t, 1.0))
871
+ invcdf = lambda p: 2.0 * cos((acos(2.0*p - 1.0) + pi) / 3.0)
872
+ support = 1.0
873
+ return pdf, cdf, invcdf, support
874
+
875
+ def _newton_raphson(f_inv_estimate, f, f_prime, tolerance=1e-12):
876
+ def f_inv(y):
877
+ "Return x such that f(x) ≈ y within the specified tolerance."
878
+ x = f_inv_estimate(y)
879
+ while abs(diff := f(x) - y) > tolerance:
880
+ x -= diff / f_prime(x)
881
+ return x
882
+ return f_inv
883
+
884
+ def _quartic_invcdf_estimate(p):
885
+ # A handrolled piecewise approximation. There is no magic here.
886
+ sign, p = (1.0, p) if p <= 1/2 else (-1.0, 1.0 - p)
887
+ if p < 0.0106:
888
+ return ((2.0 * p) ** 0.3838 - 1.0) * sign
889
+ x = (2.0 * p) ** 0.4258865685331 - 1.0
890
+ if p < 0.499:
891
+ x += 0.026818732 * sin(7.101753784 * p + 2.73230839482953)
892
+ return x * sign
893
+
894
+ @register('quartic', 'biweight')
895
+ def quartic_kernel():
896
+ pdf = lambda t: 15/16 * (1.0 - t * t) ** 2
897
+ cdf = lambda t: sumprod((3/16, -5/8, 15/16, 1/2),
898
+ (t**5, t**3, t, 1.0))
899
+ invcdf = _newton_raphson(_quartic_invcdf_estimate, f=cdf, f_prime=pdf)
900
+ support = 1.0
901
+ return pdf, cdf, invcdf, support
902
+
903
+ def _triweight_invcdf_estimate(p):
904
+ # A handrolled piecewise approximation. There is no magic here.
905
+ sign, p = (1.0, p) if p <= 1/2 else (-1.0, 1.0 - p)
906
+ x = (2.0 * p) ** 0.3400218741872791 - 1.0
907
+ if 0.00001 < p < 0.499:
908
+ x -= 0.033 * sin(1.07 * tau * (p - 0.035))
909
+ return x * sign
910
+
911
+ @register('triweight')
912
+ def triweight_kernel():
913
+ pdf = lambda t: 35/32 * (1.0 - t * t) ** 3
914
+ cdf = lambda t: sumprod((-5/32, 21/32, -35/32, 35/32, 1/2),
915
+ (t**7, t**5, t**3, t, 1.0))
916
+ invcdf = _newton_raphson(_triweight_invcdf_estimate, f=cdf, f_prime=pdf)
917
+ support = 1.0
918
+ return pdf, cdf, invcdf, support
919
+
920
+ @register('cosine')
921
+ def cosine_kernel():
922
+ c1 = pi / 4
923
+ c2 = pi / 2
924
+ pdf = lambda t: c1 * cos(c2 * t)
925
+ cdf = lambda t: 1/2 * sin(c2 * t) + 1/2
926
+ invcdf = lambda p: 2.0 * asin(2.0 * p - 1.0) / pi
927
+ support = 1.0
928
+ return pdf, cdf, invcdf, support
929
+
930
+ del register, normal_kernel, logistic_kernel, sigmoid_kernel
931
+ del rectangular_kernel, triangular_kernel, parabolic_kernel
932
+ del quartic_kernel, triweight_kernel, cosine_kernel
933
+
934
+
935
+ def kde(data, h, kernel='normal', *, cumulative=False):
936
+ """Kernel Density Estimation: Create a continuous probability density
937
+ function or cumulative distribution function from discrete samples.
938
+
939
+ The basic idea is to smooth the data using a kernel function
940
+ to help draw inferences about a population from a sample.
941
+
942
+ The degree of smoothing is controlled by the scaling parameter h
943
+ which is called the bandwidth. Smaller values emphasize local
944
+ features while larger values give smoother results.
945
+
946
+ The kernel determines the relative weights of the sample data
947
+ points. Generally, the choice of kernel shape does not matter
948
+ as much as the more influential bandwidth smoothing parameter.
949
+
950
+ Kernels that give some weight to every sample point:
951
+
952
+ normal (gauss)
953
+ logistic
954
+ sigmoid
955
+
956
+ Kernels that only give weight to sample points within
957
+ the bandwidth:
958
+
959
+ rectangular (uniform)
960
+ triangular
961
+ parabolic (epanechnikov)
962
+ quartic (biweight)
963
+ triweight
964
+ cosine
965
+
966
+ If *cumulative* is true, will return a cumulative distribution function.
967
+
968
+ A StatisticsError will be raised if the data sequence is empty.
969
+
970
+ Example
971
+ -------
972
+
973
+ Given a sample of six data points, construct a continuous
974
+ function that estimates the underlying probability density:
975
+
976
+ >>> sample = [-2.1, -1.3, -0.4, 1.9, 5.1, 6.2]
977
+ >>> f_hat = kde(sample, h=1.5)
978
+
979
+ Compute the area under the curve:
980
+
981
+ >>> area = sum(f_hat(x) for x in range(-20, 20))
982
+ >>> round(area, 4)
983
+ 1.0
984
+
985
+ Plot the estimated probability density function at
986
+ evenly spaced points from -6 to 10:
987
+
988
+ >>> for x in range(-6, 11):
989
+ ... density = f_hat(x)
990
+ ... plot = ' ' * int(density * 400) + 'x'
991
+ ... print(f'{x:2}: {density:.3f} {plot}')
992
+ ...
993
+ -6: 0.002 x
994
+ -5: 0.009 x
995
+ -4: 0.031 x
996
+ -3: 0.070 x
997
+ -2: 0.111 x
998
+ -1: 0.125 x
999
+ 0: 0.110 x
1000
+ 1: 0.086 x
1001
+ 2: 0.068 x
1002
+ 3: 0.059 x
1003
+ 4: 0.066 x
1004
+ 5: 0.082 x
1005
+ 6: 0.082 x
1006
+ 7: 0.058 x
1007
+ 8: 0.028 x
1008
+ 9: 0.009 x
1009
+ 10: 0.002 x
1010
+
1011
+ Estimate P(4.5 < X <= 7.5), the probability that a new sample value
1012
+ will be between 4.5 and 7.5:
1013
+
1014
+ >>> cdf = kde(sample, h=1.5, cumulative=True)
1015
+ >>> round(cdf(7.5) - cdf(4.5), 2)
1016
+ 0.22
1017
+
1018
+ References
1019
+ ----------
1020
+
1021
+ Kernel density estimation and its application:
1022
+ https://www.itm-conferences.org/articles/itmconf/pdf/2018/08/itmconf_sam2018_00037.pdf
1023
+
1024
+ Kernel functions in common use:
1025
+ https://en.wikipedia.org/wiki/Kernel_(statistics)#kernel_functions_in_common_use
1026
+
1027
+ Interactive graphical demonstration and exploration:
1028
+ https://demonstrations.wolfram.com/KernelDensityEstimation/
1029
+
1030
+ Kernel estimation of cumulative distribution function of a random variable with bounded support
1031
+ https://www.econstor.eu/bitstream/10419/207829/1/10.21307_stattrans-2016-037.pdf
1032
+
1033
+ """
1034
+
1035
+ n = len(data)
1036
+ if not n:
1037
+ raise StatisticsError('Empty data sequence')
1038
+
1039
+ if not isinstance(data[0], (int, float)):
1040
+ raise TypeError('Data sequence must contain ints or floats')
1041
+
1042
+ if h <= 0.0:
1043
+ raise StatisticsError(f'Bandwidth h must be positive, not {h=!r}')
1044
+
1045
+ kernel_spec = _kernel_specs.get(kernel)
1046
+ if kernel_spec is None:
1047
+ raise StatisticsError(f'Unknown kernel name: {kernel!r}')
1048
+ K = kernel_spec['pdf']
1049
+ W = kernel_spec['cdf']
1050
+ support = kernel_spec['support']
1051
+
1052
+ if support is None:
1053
+
1054
+ def pdf(x):
1055
+ return sum(K((x - x_i) / h) for x_i in data) / (len(data) * h)
1056
+
1057
+ def cdf(x):
1058
+ return sum(W((x - x_i) / h) for x_i in data) / len(data)
1059
+
1060
+ else:
1061
+
1062
+ sample = sorted(data)
1063
+ bandwidth = h * support
1064
+
1065
+ def pdf(x):
1066
+ nonlocal n, sample
1067
+ if len(data) != n:
1068
+ sample = sorted(data)
1069
+ n = len(data)
1070
+ i = bisect_left(sample, x - bandwidth)
1071
+ j = bisect_right(sample, x + bandwidth)
1072
+ supported = sample[i : j]
1073
+ return sum(K((x - x_i) / h) for x_i in supported) / (n * h)
1074
+
1075
+ def cdf(x):
1076
+ nonlocal n, sample
1077
+ if len(data) != n:
1078
+ sample = sorted(data)
1079
+ n = len(data)
1080
+ i = bisect_left(sample, x - bandwidth)
1081
+ j = bisect_right(sample, x + bandwidth)
1082
+ supported = sample[i : j]
1083
+ return sum((W((x - x_i) / h) for x_i in supported), i) / n
1084
+
1085
+ if cumulative:
1086
+ cdf.__doc__ = f'CDF estimate with {h=!r} and {kernel=!r}'
1087
+ return cdf
1088
+
1089
+ else:
1090
+ pdf.__doc__ = f'PDF estimate with {h=!r} and {kernel=!r}'
1091
+ return pdf
1092
+
1093
+
1094
+ def kde_random(data, h, kernel='normal', *, seed=None):
1095
+ """Return a function that makes a random selection from the estimated
1096
+ probability density function created by kde(data, h, kernel).
1097
+
1098
+ Providing a *seed* allows reproducible selections within a single
1099
+ thread. The seed may be an integer, float, str, or bytes.
1100
+
1101
+ A StatisticsError will be raised if the *data* sequence is empty.
1102
+
1103
+ Example:
1104
+
1105
+ >>> data = [-2.1, -1.3, -0.4, 1.9, 5.1, 6.2]
1106
+ >>> rand = kde_random(data, h=1.5, seed=8675309)
1107
+ >>> new_selections = [rand() for i in range(10)]
1108
+ >>> [round(x, 1) for x in new_selections]
1109
+ [0.7, 6.2, 1.2, 6.9, 7.0, 1.8, 2.5, -0.5, -1.8, 5.6]
1110
+
1111
+ """
1112
+ n = len(data)
1113
+ if not n:
1114
+ raise StatisticsError('Empty data sequence')
1115
+
1116
+ if not isinstance(data[0], (int, float)):
1117
+ raise TypeError('Data sequence must contain ints or floats')
1118
+
1119
+ if h <= 0.0:
1120
+ raise StatisticsError(f'Bandwidth h must be positive, not {h=!r}')
1121
+
1122
+ kernel_spec = _kernel_specs.get(kernel)
1123
+ if kernel_spec is None:
1124
+ raise StatisticsError(f'Unknown kernel name: {kernel!r}')
1125
+ invcdf = kernel_spec['invcdf']
1126
+
1127
+ prng = _random.Random(seed)
1128
+ random = prng.random
1129
+ choice = prng.choice
1130
+
1131
+ def rand():
1132
+ return choice(data) + h * invcdf(random())
1133
+
1134
+ rand.__doc__ = f'Random KDE selection with {h=!r} and {kernel=!r}'
1135
+
1136
+ return rand
1137
+
1138
+
1139
+ ## Quantiles ###############################################################
1140
+
1141
+ # There is no one perfect way to compute quantiles. Here we offer
1142
+ # two methods that serve common needs. Most other packages
1143
+ # surveyed offered at least one or both of these two, making them
1144
+ # "standard" in the sense of "widely-adopted and reproducible".
1145
+ # They are also easy to explain, easy to compute manually, and have
1146
+ # straight-forward interpretations that aren't surprising.
1147
+
1148
+ # The default method is known as "R6", "PERCENTILE.EXC", or "expected
1149
+ # value of rank order statistics". The alternative method is known as
1150
+ # "R7", "PERCENTILE.INC", or "mode of rank order statistics".
1151
+
1152
+ # For sample data where there is a positive probability for values
1153
+ # beyond the range of the data, the R6 exclusive method is a
1154
+ # reasonable choice. Consider a random sample of nine values from a
1155
+ # population with a uniform distribution from 0.0 to 1.0. The
1156
+ # distribution of the third ranked sample point is described by
1157
+ # betavariate(alpha=3, beta=7) which has mode=0.250, median=0.286, and
1158
+ # mean=0.300. Only the latter (which corresponds with R6) gives the
1159
+ # desired cut point with 30% of the population falling below that
1160
+ # value, making it comparable to a result from an inv_cdf() function.
1161
+ # The R6 exclusive method is also idempotent.
1162
+
1163
+ # For describing population data where the end points are known to
1164
+ # be included in the data, the R7 inclusive method is a reasonable
1165
+ # choice. Instead of the mean, it uses the mode of the beta
1166
+ # distribution for the interior points. Per Hyndman & Fan, "One nice
1167
+ # property is that the vertices of Q7(p) divide the range into n - 1
1168
+ # intervals, and exactly 100p% of the intervals lie to the left of
1169
+ # Q7(p) and 100(1 - p)% of the intervals lie to the right of Q7(p)."
1170
+
1171
+ # If needed, other methods could be added. However, for now, the
1172
+ # position is that fewer options make for easier choices and that
1173
+ # external packages can be used for anything more advanced.
1174
+
1175
+ def quantiles(data, *, n=4, method='exclusive'):
1176
+ """Divide *data* into *n* continuous intervals with equal probability.
1177
+
1178
+ Returns a list of (n - 1) cut points separating the intervals.
1179
+
1180
+ Set *n* to 4 for quartiles (the default). Set *n* to 10 for deciles.
1181
+ Set *n* to 100 for percentiles which gives the 99 cuts points that
1182
+ separate *data* in to 100 equal sized groups.
1183
+
1184
+ The *data* can be any iterable containing sample.
1185
+ The cut points are linearly interpolated between data points.
1186
+
1187
+ If *method* is set to *inclusive*, *data* is treated as population
1188
+ data. The minimum value is treated as the 0th percentile and the
1189
+ maximum value is treated as the 100th percentile.
1190
+
1191
+ """
1192
+ if n < 1:
1193
+ raise StatisticsError('n must be at least 1')
1194
+
1195
+ data = sorted(data)
1196
+
1197
+ ld = len(data)
1198
+ if ld < 2:
1199
+ if ld == 1:
1200
+ return data * (n - 1)
1201
+ raise StatisticsError('must have at least one data point')
1202
+
1203
+ if method == 'inclusive':
1204
+ m = ld - 1
1205
+ result = []
1206
+ for i in range(1, n):
1207
+ j, delta = divmod(i * m, n)
1208
+ interpolated = (data[j] * (n - delta) + data[j + 1] * delta) / n
1209
+ result.append(interpolated)
1210
+ return result
1211
+
1212
+ if method == 'exclusive':
1213
+ m = ld + 1
1214
+ result = []
1215
+ for i in range(1, n):
1216
+ j = i * m // n # rescale i to m/n
1217
+ j = 1 if j < 1 else ld-1 if j > ld-1 else j # clamp to 1 .. ld-1
1218
+ delta = i*m - j*n # exact integer math
1219
+ interpolated = (data[j - 1] * (n - delta) + data[j] * delta) / n
1220
+ result.append(interpolated)
1221
+ return result
1222
+
1223
+ raise ValueError(f'Unknown method: {method!r}')
1224
+
1225
+
1226
+ ## Normal Distribution #####################################################
1227
+
1228
+ class NormalDist:
1229
+ "Normal distribution of a random variable"
1230
+ # https://en.wikipedia.org/wiki/Normal_distribution
1231
+ # https://en.wikipedia.org/wiki/Variance#Properties
1232
+
1233
+ __slots__ = {
1234
+ '_mu': 'Arithmetic mean of a normal distribution',
1235
+ '_sigma': 'Standard deviation of a normal distribution',
1236
+ }
1237
+
1238
+ def __init__(self, mu=0.0, sigma=1.0):
1239
+ "NormalDist where mu is the mean and sigma is the standard deviation."
1240
+ if sigma < 0.0:
1241
+ raise StatisticsError('sigma must be non-negative')
1242
+ self._mu = float(mu)
1243
+ self._sigma = float(sigma)
1244
+
1245
+ @classmethod
1246
+ def from_samples(cls, data):
1247
+ "Make a normal distribution instance from sample data."
1248
+ return cls(*_mean_stdev(data))
1249
+
1250
+ def samples(self, n, *, seed=None):
1251
+ "Generate *n* samples for a given mean and standard deviation."
1252
+ rnd = random.random if seed is None else random.Random(seed).random
1253
+ inv_cdf = _normal_dist_inv_cdf
1254
+ mu = self._mu
1255
+ sigma = self._sigma
1256
+ return [inv_cdf(rnd(), mu, sigma) for _ in repeat(None, n)]
1257
+
1258
+ def pdf(self, x):
1259
+ "Probability density function. P(x <= X < x+dx) / dx"
1260
+ variance = self._sigma * self._sigma
1261
+ if not variance:
1262
+ raise StatisticsError('pdf() not defined when sigma is zero')
1263
+ diff = x - self._mu
1264
+ return exp(diff * diff / (-2.0 * variance)) / sqrt(tau * variance)
1265
+
1266
+ def cdf(self, x):
1267
+ "Cumulative distribution function. P(X <= x)"
1268
+ if not self._sigma:
1269
+ raise StatisticsError('cdf() not defined when sigma is zero')
1270
+ return 0.5 * erfc((self._mu - x) / (self._sigma * _SQRT2))
1271
+
1272
+ def inv_cdf(self, p):
1273
+ """Inverse cumulative distribution function. x : P(X <= x) = p
1274
+
1275
+ Finds the value of the random variable such that the probability of
1276
+ the variable being less than or equal to that value equals the given
1277
+ probability.
1278
+
1279
+ This function is also called the percent point function or quantile
1280
+ function.
1281
+ """
1282
+ if p <= 0.0 or p >= 1.0:
1283
+ raise StatisticsError('p must be in the range 0.0 < p < 1.0')
1284
+ return _normal_dist_inv_cdf(p, self._mu, self._sigma)
1285
+
1286
+ def quantiles(self, n=4):
1287
+ """Divide into *n* continuous intervals with equal probability.
1288
+
1289
+ Returns a list of (n - 1) cut points separating the intervals.
1290
+
1291
+ Set *n* to 4 for quartiles (the default). Set *n* to 10 for deciles.
1292
+ Set *n* to 100 for percentiles which gives the 99 cuts points that
1293
+ separate the normal distribution in to 100 equal sized groups.
1294
+ """
1295
+ return [self.inv_cdf(i / n) for i in range(1, n)]
1296
+
1297
+ def overlap(self, other):
1298
+ """Compute the overlapping coefficient (OVL) between two normal distributions.
1299
+
1300
+ Measures the agreement between two normal probability distributions.
1301
+ Returns a value between 0.0 and 1.0 giving the overlapping area in
1302
+ the two underlying probability density functions.
1303
+
1304
+ >>> N1 = NormalDist(2.4, 1.6)
1305
+ >>> N2 = NormalDist(3.2, 2.0)
1306
+ >>> N1.overlap(N2)
1307
+ 0.8035050657330205
1308
+ """
1309
+ # See: "The overlapping coefficient as a measure of agreement between
1310
+ # probability distributions and point estimation of the overlap of two
1311
+ # normal densities" -- Henry F. Inman and Edwin L. Bradley Jr
1312
+ # http://dx.doi.org/10.1080/03610928908830127
1313
+ if not isinstance(other, NormalDist):
1314
+ raise TypeError('Expected another NormalDist instance')
1315
+ X, Y = self, other
1316
+ if (Y._sigma, Y._mu) < (X._sigma, X._mu): # sort to assure commutativity
1317
+ X, Y = Y, X
1318
+ X_var, Y_var = X.variance, Y.variance
1319
+ if not X_var or not Y_var:
1320
+ raise StatisticsError('overlap() not defined when sigma is zero')
1321
+ dv = Y_var - X_var
1322
+ dm = fabs(Y._mu - X._mu)
1323
+ if not dv:
1324
+ return erfc(dm / (2.0 * X._sigma * _SQRT2))
1325
+ a = X._mu * Y_var - Y._mu * X_var
1326
+ b = X._sigma * Y._sigma * sqrt(dm * dm + dv * log(Y_var / X_var))
1327
+ x1 = (a + b) / dv
1328
+ x2 = (a - b) / dv
1329
+ return 1.0 - (fabs(Y.cdf(x1) - X.cdf(x1)) + fabs(Y.cdf(x2) - X.cdf(x2)))
1330
+
1331
+ def zscore(self, x):
1332
+ """Compute the Standard Score. (x - mean) / stdev
1333
+
1334
+ Describes *x* in terms of the number of standard deviations
1335
+ above or below the mean of the normal distribution.
1336
+ """
1337
+ # https://www.statisticshowto.com/probability-and-statistics/z-score/
1338
+ if not self._sigma:
1339
+ raise StatisticsError('zscore() not defined when sigma is zero')
1340
+ return (x - self._mu) / self._sigma
1341
+
1342
+ @property
1343
+ def mean(self):
1344
+ "Arithmetic mean of the normal distribution."
1345
+ return self._mu
1346
+
1347
+ @property
1348
+ def median(self):
1349
+ "Return the median of the normal distribution"
1350
+ return self._mu
1351
+
1352
+ @property
1353
+ def mode(self):
1354
+ """Return the mode of the normal distribution
1355
+
1356
+ The mode is the value x where which the probability density
1357
+ function (pdf) takes its maximum value.
1358
+ """
1359
+ return self._mu
1360
+
1361
+ @property
1362
+ def stdev(self):
1363
+ "Standard deviation of the normal distribution."
1364
+ return self._sigma
1365
+
1366
+ @property
1367
+ def variance(self):
1368
+ "Square of the standard deviation."
1369
+ return self._sigma * self._sigma
1370
+
1371
+ def __add__(x1, x2):
1372
+ """Add a constant or another NormalDist instance.
1373
+
1374
+ If *other* is a constant, translate mu by the constant,
1375
+ leaving sigma unchanged.
1376
+
1377
+ If *other* is a NormalDist, add both the means and the variances.
1378
+ Mathematically, this works only if the two distributions are
1379
+ independent or if they are jointly normally distributed.
1380
+ """
1381
+ if isinstance(x2, NormalDist):
1382
+ return NormalDist(x1._mu + x2._mu, hypot(x1._sigma, x2._sigma))
1383
+ return NormalDist(x1._mu + x2, x1._sigma)
1384
+
1385
+ def __sub__(x1, x2):
1386
+ """Subtract a constant or another NormalDist instance.
1387
+
1388
+ If *other* is a constant, translate by the constant mu,
1389
+ leaving sigma unchanged.
1390
+
1391
+ If *other* is a NormalDist, subtract the means and add the variances.
1392
+ Mathematically, this works only if the two distributions are
1393
+ independent or if they are jointly normally distributed.
1394
+ """
1395
+ if isinstance(x2, NormalDist):
1396
+ return NormalDist(x1._mu - x2._mu, hypot(x1._sigma, x2._sigma))
1397
+ return NormalDist(x1._mu - x2, x1._sigma)
1398
+
1399
+ def __mul__(x1, x2):
1400
+ """Multiply both mu and sigma by a constant.
1401
+
1402
+ Used for rescaling, perhaps to change measurement units.
1403
+ Sigma is scaled with the absolute value of the constant.
1404
+ """
1405
+ return NormalDist(x1._mu * x2, x1._sigma * fabs(x2))
1406
+
1407
+ def __truediv__(x1, x2):
1408
+ """Divide both mu and sigma by a constant.
1409
+
1410
+ Used for rescaling, perhaps to change measurement units.
1411
+ Sigma is scaled with the absolute value of the constant.
1412
+ """
1413
+ return NormalDist(x1._mu / x2, x1._sigma / fabs(x2))
1414
+
1415
+ def __pos__(x1):
1416
+ "Return a copy of the instance."
1417
+ return NormalDist(x1._mu, x1._sigma)
1418
+
1419
+ def __neg__(x1):
1420
+ "Negates mu while keeping sigma the same."
1421
+ return NormalDist(-x1._mu, x1._sigma)
1422
+
1423
+ __radd__ = __add__
1424
+
1425
+ def __rsub__(x1, x2):
1426
+ "Subtract a NormalDist from a constant or another NormalDist."
1427
+ return -(x1 - x2)
1428
+
1429
+ __rmul__ = __mul__
1430
+
1431
+ def __eq__(x1, x2):
1432
+ "Two NormalDist objects are equal if their mu and sigma are both equal."
1433
+ if not isinstance(x2, NormalDist):
1434
+ return NotImplemented
1435
+ return x1._mu == x2._mu and x1._sigma == x2._sigma
1436
+
1437
+ def __hash__(self):
1438
+ "NormalDist objects hash equal if their mu and sigma are both equal."
1439
+ return hash((self._mu, self._sigma))
1440
+
1441
+ def __repr__(self):
1442
+ return f'{type(self).__name__}(mu={self._mu!r}, sigma={self._sigma!r})'
1443
+
1444
+ def __getstate__(self):
1445
+ return self._mu, self._sigma
1446
+
1447
+ def __setstate__(self, state):
1448
+ self._mu, self._sigma = state
1449
+
1450
+
1451
+ ## Private utilities #######################################################
1452
+
1453
+ def _sum(data):
1454
+ """_sum(data) -> (type, sum, count)
1455
+
1456
+ Return a high-precision sum of the given numeric data as a fraction,
1457
+ together with the type to be converted to and the count of items.
1458
+
1459
+ Examples
1460
+ --------
1461
+
1462
+ >>> _sum([3, 2.25, 4.5, -0.5, 0.25])
1463
+ (<class 'float'>, Fraction(19, 2), 5)
1464
+
1465
+ Some sources of round-off error will be avoided:
1466
+
1467
+ # Built-in sum returns zero.
1468
+ >>> _sum([1e50, 1, -1e50] * 1000)
1469
+ (<class 'float'>, Fraction(1000, 1), 3000)
1470
+
1471
+ Fractions and Decimals are also supported:
1472
+
1473
+ >>> from fractions import Fraction as F
1474
+ >>> _sum([F(2, 3), F(7, 5), F(1, 4), F(5, 6)])
1475
+ (<class 'fractions.Fraction'>, Fraction(63, 20), 4)
1476
+
1477
+ >>> from decimal import Decimal as D
1478
+ >>> data = [D("0.1375"), D("0.2108"), D("0.3061"), D("0.0419")]
1479
+ >>> _sum(data)
1480
+ (<class 'decimal.Decimal'>, Fraction(6963, 10000), 4)
1481
+
1482
+ Mixed types are currently treated as an error, except that int is
1483
+ allowed.
1484
+
1485
+ """
1486
+ count = 0
1487
+ types = set()
1488
+ types_add = types.add
1489
+ partials = {}
1490
+ partials_get = partials.get
1491
+
1492
+ for typ, values in groupby(data, type):
1493
+ types_add(typ)
1494
+ for n, d in map(_exact_ratio, values):
1495
+ count += 1
1496
+ partials[d] = partials_get(d, 0) + n
1497
+
1498
+ if None in partials:
1499
+ # The sum will be a NAN or INF. We can ignore all the finite
1500
+ # partials, and just look at this special one.
1501
+ total = partials[None]
1502
+ assert not _isfinite(total)
1503
+ else:
1504
+ # Sum all the partial sums using builtin sum.
1505
+ total = sum(Fraction(n, d) for d, n in partials.items())
1506
+
1507
+ T = reduce(_coerce, types, int) # or raise TypeError
1508
+ return (T, total, count)
1509
+
1510
+
1511
+ def _ss(data, c=None):
1512
+ """Return the exact mean and sum of square deviations of sequence data.
1513
+
1514
+ Calculations are done in a single pass, allowing the input to be an iterator.
1515
+
1516
+ If given *c* is used the mean; otherwise, it is calculated from the data.
1517
+ Use the *c* argument with care, as it can lead to garbage results.
1518
+
1519
+ """
1520
+ if c is not None:
1521
+ T, ssd, count = _sum((d := x - c) * d for x in data)
1522
+ return (T, ssd, c, count)
1523
+
1524
+ count = 0
1525
+ types = set()
1526
+ types_add = types.add
1527
+ sx_partials = defaultdict(int)
1528
+ sxx_partials = defaultdict(int)
1529
+
1530
+ for typ, values in groupby(data, type):
1531
+ types_add(typ)
1532
+ for n, d in map(_exact_ratio, values):
1533
+ count += 1
1534
+ sx_partials[d] += n
1535
+ sxx_partials[d] += n * n
1536
+
1537
+ if not count:
1538
+ ssd = c = Fraction(0)
1539
+
1540
+ elif None in sx_partials:
1541
+ # The sum will be a NAN or INF. We can ignore all the finite
1542
+ # partials, and just look at this special one.
1543
+ ssd = c = sx_partials[None]
1544
+ assert not _isfinite(ssd)
1545
+
1546
+ else:
1547
+ sx = sum(Fraction(n, d) for d, n in sx_partials.items())
1548
+ sxx = sum(Fraction(n, d*d) for d, n in sxx_partials.items())
1549
+ # This formula has poor numeric properties for floats,
1550
+ # but with fractions it is exact.
1551
+ ssd = (count * sxx - sx * sx) / count
1552
+ c = sx / count
1553
+
1554
+ T = reduce(_coerce, types, int) # or raise TypeError
1555
+ return (T, ssd, c, count)
1556
+
1557
+
1558
+ def _isfinite(x):
1559
+ try:
1560
+ return x.is_finite() # Likely a Decimal.
1561
+ except AttributeError:
1562
+ return math.isfinite(x) # Coerces to float first.
1563
+
1564
+
1565
+ def _coerce(T, S):
1566
+ """Coerce types T and S to a common type, or raise TypeError.
1567
+
1568
+ Coercion rules are currently an implementation detail. See the CoerceTest
1569
+ test class in test_statistics for details.
1570
+
1571
+ """
1572
+ # See http://bugs.python.org/issue24068.
1573
+ assert T is not bool, "initial type T is bool"
1574
+ # If the types are the same, no need to coerce anything. Put this
1575
+ # first, so that the usual case (no coercion needed) happens as soon
1576
+ # as possible.
1577
+ if T is S: return T
1578
+ # Mixed int & other coerce to the other type.
1579
+ if S is int or S is bool: return T
1580
+ if T is int: return S
1581
+ # If one is a (strict) subclass of the other, coerce to the subclass.
1582
+ if issubclass(S, T): return S
1583
+ if issubclass(T, S): return T
1584
+ # Ints coerce to the other type.
1585
+ if issubclass(T, int): return S
1586
+ if issubclass(S, int): return T
1587
+ # Mixed fraction & float coerces to float (or float subclass).
1588
+ if issubclass(T, Fraction) and issubclass(S, float):
1589
+ return S
1590
+ if issubclass(T, float) and issubclass(S, Fraction):
1591
+ return T
1592
+ # Any other combination is disallowed.
1593
+ msg = "don't know how to coerce %s and %s"
1594
+ raise TypeError(msg % (T.__name__, S.__name__))
1595
+
1596
+
1597
+ def _exact_ratio(x):
1598
+ """Return Real number x to exact (numerator, denominator) pair.
1599
+
1600
+ >>> _exact_ratio(0.25)
1601
+ (1, 4)
1602
+
1603
+ x is expected to be an int, Fraction, Decimal or float.
1604
+
1605
+ """
1606
+ try:
1607
+ return x.as_integer_ratio()
1608
+ except AttributeError:
1609
+ pass
1610
+ except (OverflowError, ValueError):
1611
+ # float NAN or INF.
1612
+ assert not _isfinite(x)
1613
+ return (x, None)
1614
+
1615
+ try:
1616
+ # x may be an Integral ABC.
1617
+ return (x.numerator, x.denominator)
1618
+ except AttributeError:
1619
+ msg = f"can't convert type '{type(x).__name__}' to numerator/denominator"
1620
+ raise TypeError(msg)
1621
+
1622
+
1623
+ def _convert(value, T):
1624
+ """Convert value to given numeric type T."""
1625
+ if type(value) is T:
1626
+ # This covers the cases where T is Fraction, or where value is
1627
+ # a NAN or INF (Decimal or float).
1628
+ return value
1629
+
1630
+ if issubclass(T, int) and value.denominator != 1:
1631
+ T = float
1632
+
1633
+ try:
1634
+ # FIXME: what do we do if this overflows?
1635
+ return T(value)
1636
+ except TypeError:
1637
+ if issubclass(T, Decimal):
1638
+ return T(value.numerator) / T(value.denominator)
1639
+ else:
1640
+ raise
1641
+
1642
+
1643
+ def _fail_neg(values, errmsg='negative value'):
1644
+ """Iterate over values, failing if any are less than zero."""
1645
+ for x in values:
1646
+ if x < 0:
1647
+ raise StatisticsError(errmsg)
1648
+ yield x
1649
+
1650
+
1651
+ def _rank(data, /, *, key=None, reverse=False, ties='average', start=1) -> list[float]:
1652
+ """Rank order a dataset. The lowest value has rank 1.
1653
+
1654
+ Ties are averaged so that equal values receive the same rank:
1655
+
1656
+ >>> data = [31, 56, 31, 25, 75, 18]
1657
+ >>> _rank(data)
1658
+ [3.5, 5.0, 3.5, 2.0, 6.0, 1.0]
1659
+
1660
+ The operation is idempotent:
1661
+
1662
+ >>> _rank([3.5, 5.0, 3.5, 2.0, 6.0, 1.0])
1663
+ [3.5, 5.0, 3.5, 2.0, 6.0, 1.0]
1664
+
1665
+ It is possible to rank the data in reverse order so that the
1666
+ highest value has rank 1. Also, a key-function can extract
1667
+ the field to be ranked:
1668
+
1669
+ >>> goals = [('eagles', 45), ('bears', 48), ('lions', 44)]
1670
+ >>> _rank(goals, key=itemgetter(1), reverse=True)
1671
+ [2.0, 1.0, 3.0]
1672
+
1673
+ Ranks are conventionally numbered starting from one; however,
1674
+ setting *start* to zero allows the ranks to be used as array indices:
1675
+
1676
+ >>> prize = ['Gold', 'Silver', 'Bronze', 'Certificate']
1677
+ >>> scores = [8.1, 7.3, 9.4, 8.3]
1678
+ >>> [prize[int(i)] for i in _rank(scores, start=0, reverse=True)]
1679
+ ['Bronze', 'Certificate', 'Gold', 'Silver']
1680
+
1681
+ """
1682
+ # If this function becomes public at some point, more thought
1683
+ # needs to be given to the signature. A list of ints is
1684
+ # plausible when ties is "min" or "max". When ties is "average",
1685
+ # either list[float] or list[Fraction] is plausible.
1686
+
1687
+ # Default handling of ties matches scipy.stats.mstats.spearmanr.
1688
+ if ties != 'average':
1689
+ raise ValueError(f'Unknown tie resolution method: {ties!r}')
1690
+ if key is not None:
1691
+ data = map(key, data)
1692
+ val_pos = sorted(zip(data, count()), reverse=reverse)
1693
+ i = start - 1
1694
+ result = [0] * len(val_pos)
1695
+ for _, g in groupby(val_pos, key=itemgetter(0)):
1696
+ group = list(g)
1697
+ size = len(group)
1698
+ rank = i + (size + 1) / 2
1699
+ for value, orig_pos in group:
1700
+ result[orig_pos] = rank
1701
+ i += size
1702
+ return result
1703
+
1704
+
1705
+ def _integer_sqrt_of_frac_rto(n: int, m: int) -> int:
1706
+ """Square root of n/m, rounded to the nearest integer using round-to-odd."""
1707
+ # Reference: https://www.lri.fr/~melquion/doc/05-imacs17_1-expose.pdf
1708
+ a = math.isqrt(n // m)
1709
+ return a | (a*a*m != n)
1710
+
1711
+
1712
+ # For 53 bit precision floats, the bit width used in
1713
+ # _float_sqrt_of_frac() is 109.
1714
+ _sqrt_bit_width: int = 2 * sys.float_info.mant_dig + 3
1715
+
1716
+
1717
+ def _float_sqrt_of_frac(n: int, m: int) -> float:
1718
+ """Square root of n/m as a float, correctly rounded."""
1719
+ # See principle and proof sketch at: https://bugs.python.org/msg407078
1720
+ q = (n.bit_length() - m.bit_length() - _sqrt_bit_width) // 2
1721
+ if q >= 0:
1722
+ numerator = _integer_sqrt_of_frac_rto(n, m << 2 * q) << q
1723
+ denominator = 1
1724
+ else:
1725
+ numerator = _integer_sqrt_of_frac_rto(n << -2 * q, m)
1726
+ denominator = 1 << -q
1727
+ return numerator / denominator # Convert to float
1728
+
1729
+
1730
+ def _decimal_sqrt_of_frac(n: int, m: int) -> Decimal:
1731
+ """Square root of n/m as a Decimal, correctly rounded."""
1732
+ # Premise: For decimal, computing (n/m).sqrt() can be off
1733
+ # by 1 ulp from the correctly rounded result.
1734
+ # Method: Check the result, moving up or down a step if needed.
1735
+ if n <= 0:
1736
+ if not n:
1737
+ return Decimal('0.0')
1738
+ n, m = -n, -m
1739
+
1740
+ root = (Decimal(n) / Decimal(m)).sqrt()
1741
+ nr, dr = root.as_integer_ratio()
1742
+
1743
+ plus = root.next_plus()
1744
+ np, dp = plus.as_integer_ratio()
1745
+ # test: n / m > ((root + plus) / 2) ** 2
1746
+ if 4 * n * (dr*dp)**2 > m * (dr*np + dp*nr)**2:
1747
+ return plus
1748
+
1749
+ minus = root.next_minus()
1750
+ nm, dm = minus.as_integer_ratio()
1751
+ # test: n / m < ((root + minus) / 2) ** 2
1752
+ if 4 * n * (dr*dm)**2 < m * (dr*nm + dm*nr)**2:
1753
+ return minus
1754
+
1755
+ return root
1756
+
1757
+
1758
+ def _mean_stdev(data):
1759
+ """In one pass, compute the mean and sample standard deviation as floats."""
1760
+ T, ss, xbar, n = _ss(data)
1761
+ if n < 2:
1762
+ raise StatisticsError('stdev requires at least two data points')
1763
+ mss = ss / (n - 1)
1764
+ try:
1765
+ return float(xbar), _float_sqrt_of_frac(mss.numerator, mss.denominator)
1766
+ except AttributeError:
1767
+ # Handle Nans and Infs gracefully
1768
+ return float(xbar), float(xbar) / float(ss)
1769
+
1770
+
1771
+ def _sqrtprod(x: float, y: float) -> float:
1772
+ "Return sqrt(x * y) computed with improved accuracy and without overflow/underflow."
1773
+
1774
+ h = sqrt(x * y)
1775
+
1776
+ if not isfinite(h):
1777
+ if isinf(h) and not isinf(x) and not isinf(y):
1778
+ # Finite inputs overflowed, so scale down, and recompute.
1779
+ scale = 2.0 ** -512 # sqrt(1 / sys.float_info.max)
1780
+ return _sqrtprod(scale * x, scale * y) / scale
1781
+ return h
1782
+
1783
+ if not h:
1784
+ if x and y:
1785
+ # Non-zero inputs underflowed, so scale up, and recompute.
1786
+ # Scale: 1 / sqrt(sys.float_info.min * sys.float_info.epsilon)
1787
+ scale = 2.0 ** 537
1788
+ return _sqrtprod(scale * x, scale * y) / scale
1789
+ return h
1790
+
1791
+ # Improve accuracy with a differential correction.
1792
+ # https://www.wolframalpha.com/input/?i=Maclaurin+series+sqrt%28h**2+%2B+x%29+at+x%3D0
1793
+ d = sumprod((x, h), (y, -h))
1794
+ return h + d / (2.0 * h)
1795
+
1796
+
1797
+ def _normal_dist_inv_cdf(p, mu, sigma):
1798
+ # There is no closed-form solution to the inverse CDF for the normal
1799
+ # distribution, so we use a rational approximation instead:
1800
+ # Wichura, M.J. (1988). "Algorithm AS241: The Percentage Points of the
1801
+ # Normal Distribution". Applied Statistics. Blackwell Publishing. 37
1802
+ # (3): 477–484. doi:10.2307/2347330. JSTOR 2347330.
1803
+ q = p - 0.5
1804
+
1805
+ if fabs(q) <= 0.425:
1806
+ r = 0.180625 - q * q
1807
+ # Hash sum: 55.88319_28806_14901_4439
1808
+ num = (((((((2.50908_09287_30122_6727e+3 * r +
1809
+ 3.34305_75583_58812_8105e+4) * r +
1810
+ 6.72657_70927_00870_0853e+4) * r +
1811
+ 4.59219_53931_54987_1457e+4) * r +
1812
+ 1.37316_93765_50946_1125e+4) * r +
1813
+ 1.97159_09503_06551_4427e+3) * r +
1814
+ 1.33141_66789_17843_7745e+2) * r +
1815
+ 3.38713_28727_96366_6080e+0) * q
1816
+ den = (((((((5.22649_52788_52854_5610e+3 * r +
1817
+ 2.87290_85735_72194_2674e+4) * r +
1818
+ 3.93078_95800_09271_0610e+4) * r +
1819
+ 2.12137_94301_58659_5867e+4) * r +
1820
+ 5.39419_60214_24751_1077e+3) * r +
1821
+ 6.87187_00749_20579_0830e+2) * r +
1822
+ 4.23133_30701_60091_1252e+1) * r +
1823
+ 1.0)
1824
+ x = num / den
1825
+ return mu + (x * sigma)
1826
+
1827
+ r = p if q <= 0.0 else 1.0 - p
1828
+ r = sqrt(-log(r))
1829
+ if r <= 5.0:
1830
+ r = r - 1.6
1831
+ # Hash sum: 49.33206_50330_16102_89036
1832
+ num = (((((((7.74545_01427_83414_07640e-4 * r +
1833
+ 2.27238_44989_26918_45833e-2) * r +
1834
+ 2.41780_72517_74506_11770e-1) * r +
1835
+ 1.27045_82524_52368_38258e+0) * r +
1836
+ 3.64784_83247_63204_60504e+0) * r +
1837
+ 5.76949_72214_60691_40550e+0) * r +
1838
+ 4.63033_78461_56545_29590e+0) * r +
1839
+ 1.42343_71107_49683_57734e+0)
1840
+ den = (((((((1.05075_00716_44416_84324e-9 * r +
1841
+ 5.47593_80849_95344_94600e-4) * r +
1842
+ 1.51986_66563_61645_71966e-2) * r +
1843
+ 1.48103_97642_74800_74590e-1) * r +
1844
+ 6.89767_33498_51000_04550e-1) * r +
1845
+ 1.67638_48301_83803_84940e+0) * r +
1846
+ 2.05319_16266_37758_82187e+0) * r +
1847
+ 1.0)
1848
+ else:
1849
+ r = r - 5.0
1850
+ # Hash sum: 47.52583_31754_92896_71629
1851
+ num = (((((((2.01033_43992_92288_13265e-7 * r +
1852
+ 2.71155_55687_43487_57815e-5) * r +
1853
+ 1.24266_09473_88078_43860e-3) * r +
1854
+ 2.65321_89526_57612_30930e-2) * r +
1855
+ 2.96560_57182_85048_91230e-1) * r +
1856
+ 1.78482_65399_17291_33580e+0) * r +
1857
+ 5.46378_49111_64114_36990e+0) * r +
1858
+ 6.65790_46435_01103_77720e+0)
1859
+ den = (((((((2.04426_31033_89939_78564e-15 * r +
1860
+ 1.42151_17583_16445_88870e-7) * r +
1861
+ 1.84631_83175_10054_68180e-5) * r +
1862
+ 7.86869_13114_56132_59100e-4) * r +
1863
+ 1.48753_61290_85061_48525e-2) * r +
1864
+ 1.36929_88092_27358_05310e-1) * r +
1865
+ 5.99832_20655_58879_37690e-1) * r +
1866
+ 1.0)
1867
+
1868
+ x = num / den
1869
+ if q < 0.0:
1870
+ x = -x
1871
+
1872
+ return mu + (x * sigma)
1873
+
1874
+
1875
+ # If available, use C implementation
1876
+ try:
1877
+ from _statistics import _normal_dist_inv_cdf
1878
+ except ImportError:
1879
+ pass