@aehrc/smart-forms-renderer 0.4.0 → 0.6.0

package/src/utils/populate.js

@@ -1,78 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-import { getLaunchContexts, getQuestionnaireLevelXFhirQueryVariables, getSourceQueries } from './populateContexts';
-import { isInputParameters } from 'sdc-populate';
-import { createPopulateInputParameters } from './populateInputParams';
-import { requestPopulate } from '../api/populate';
-/**
- * Pre-populate questionnaire from CMS patient data to form a populated questionnaireResponse
- *
- * @author Sean Fong
- */
-export function populateQuestionnaire(questionnaire, fhirClient, patient, user, encounter, populateForm, exitSpinner) {
-    var _a;
-    return __awaiter(this, void 0, void 0, function* () {
-        // Get launch contexts, source queries and questionnaire-level variables
-        const launchContexts = getLaunchContexts(questionnaire);
-        const sourceQueries = getSourceQueries(questionnaire);
-        const questionnaireLevelVariables = getQuestionnaireLevelXFhirQueryVariables(questionnaire);
-        if (launchContexts.length === 0 &&
-            sourceQueries.length === 0 &&
-            questionnaireLevelVariables.length === 0) {
-            exitSpinner();
-            return;
-        }
-        // Define population input parameters from launch contexts, source queries and questionnaire-level variables
-        const inputParameters = createPopulateInputParameters(questionnaire, patient, user, encounter, launchContexts, sourceQueries, questionnaireLevelVariables);
-        if (!inputParameters) {
-            exitSpinner();
-            return;
-        }
-        if (!isInputParameters(inputParameters)) {
-            exitSpinner();
-            return;
-        }
-        // Perform population if parameters satisfies input parameters
-        const outputParameters = yield requestPopulate(fhirClient, inputParameters);
-        if (outputParameters.resourceType === 'OperationOutcome') {
-            exitSpinner();
-            return;
-        }
-        const responseParameter = outputParameters.parameter.find((param) => param.name === 'response');
-        const issuesParameter = outputParameters.parameter.find((param) => param.name === 'issues');
-        if (issuesParameter) {
-            for (const issue of issuesParameter.resource.issue) {
-                if ((_a = issue.details) === null || _a === void 0 ? void 0 : _a.text) {
-                    console.warn(issue.details.text);
-                }
-            }
-            populateForm({ populated: responseParameter.resource, hasWarnings: true });
-            return;
-        }
-        populateForm({ populated: responseParameter.resource, hasWarnings: false });
-    });
-}
-//# sourceMappingURL=populate.js.map

package/src/utils/populate.js.map

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package/src/utils/populate.ts

@@ -1,117 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-import type {
-  Encounter,
-  Patient,
-  Practitioner,
-  Questionnaire,
-  QuestionnaireResponse
-} from 'fhir/r4';
-import {
-  getLaunchContexts,
-  getQuestionnaireLevelXFhirQueryVariables,
-  getSourceQueries
-} from './populateContexts';
-import type { IssuesParameter, ResponseParameter } from 'sdc-populate';
-import { isInputParameters } from 'sdc-populate';
-import type Client from 'fhirclient/lib/Client';
-import { createPopulateInputParameters } from './populateInputParams';
-import { requestPopulate } from '../api/populate';
-
-export interface PopulateFormParams {
-  populated: QuestionnaireResponse;
-  hasWarnings: boolean;
-}
-/**
- * Pre-populate questionnaire from CMS patient data to form a populated questionnaireResponse
- *
- * @author Sean Fong
- */
-export async function populateQuestionnaire(
-  questionnaire: Questionnaire,
-  fhirClient: Client,
-  patient: Patient,
-  user: Practitioner,
-  encounter: Encounter | null,
-  populateForm: {
-    (params: PopulateFormParams): void;
-  },
-  exitSpinner: { (): void }
-) {
-  // Get launch contexts, source queries and questionnaire-level variables
-  const launchContexts = getLaunchContexts(questionnaire);
-  const sourceQueries = getSourceQueries(questionnaire);
-  const questionnaireLevelVariables = getQuestionnaireLevelXFhirQueryVariables(questionnaire);
-
-  if (
-    launchContexts.length === 0 &&
-    sourceQueries.length === 0 &&
-    questionnaireLevelVariables.length === 0
-  ) {
-    exitSpinner();
-    return;
-  }
-
-  // Define population input parameters from launch contexts, source queries and questionnaire-level variables
-  const inputParameters = createPopulateInputParameters(
-    questionnaire,
-    patient,
-    user,
-    encounter,
-    launchContexts,
-    sourceQueries,
-    questionnaireLevelVariables
-  );
-
-  if (!inputParameters) {
-    exitSpinner();
-    return;
-  }
-
-  if (!isInputParameters(inputParameters)) {
-    exitSpinner();
-    return;
-  }
-
-  // Perform population if parameters satisfies input parameters
-  const outputParameters = await requestPopulate(fhirClient, inputParameters);
-
-  if (outputParameters.resourceType === 'OperationOutcome') {
-    exitSpinner();
-    return;
-  }
-
-  const responseParameter = outputParameters.parameter.find(
-    (param) => param.name === 'response'
-  ) as ResponseParameter;
-  const issuesParameter = outputParameters.parameter.find((param) => param.name === 'issues') as
-    | IssuesParameter
-    | undefined;
-
-  if (issuesParameter) {
-    for (const issue of issuesParameter.resource.issue) {
-      if (issue.details?.text) {
-        console.warn(issue.details.text);
-      }
-    }
-    populateForm({ populated: responseParameter.resource, hasWarnings: true });
-    return;
-  }
-
-  populateForm({ populated: responseParameter.resource, hasWarnings: false });
-}

package/src/utils/populateCallback.js

@@ -1,40 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-import axios from 'axios';
-const ABSOLUTE_URL_REGEX = /^(https?|ftp):\/\/[^\s/$.?#].[^\s]*$/;
-export const fetchResourceCallback = (query, requestConfig) => {
-    let { clientEndpoint } = requestConfig;
-    const { authToken } = requestConfig;
-    const headers = {
-        Accept: 'application/json;charset=utf-8',
-        Authorization: `Bearer ${authToken}`
-    };
-    if (!clientEndpoint.endsWith('/')) {
-        clientEndpoint += '/';
-    }
-    if (ABSOLUTE_URL_REGEX.test(query)) {
-        return axios.get(query, {
-            headers: headers
-        });
-    }
-    else {
-        return axios.get(clientEndpoint + query, {
-            headers: headers
-        });
-    }
-};
-//# sourceMappingURL=populateCallback.js.map

package/src/utils/populateCallback.js.map

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package/src/utils/populateCallback.ts

@@ -1,53 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-import type { FetchResourceCallback } from 'sdc-populate';
-import axios from 'axios';
-
-const ABSOLUTE_URL_REGEX = /^(https?|ftp):\/\/[^\s/$.?#].[^\s]*$/;
-
-export interface RequestConfig {
-  clientEndpoint: string;
-  authToken: string;
-}
-
-export const fetchResourceCallback: FetchResourceCallback = (
-  query: string,
-  requestConfig: RequestConfig
-) => {
-  let { clientEndpoint } = requestConfig;
-  const { authToken } = requestConfig;
-
-  const headers = {
-    Accept: 'application/json;charset=utf-8',
-    Authorization: `Bearer ${authToken}`
-  };
-
-  if (!clientEndpoint.endsWith('/')) {
-    clientEndpoint += '/';
-  }
-
-  if (ABSOLUTE_URL_REGEX.test(query)) {
-    return axios.get(query, {
-      headers: headers
-    });
-  } else {
-    return axios.get(clientEndpoint + query, {
-      headers: headers
-    });
-  }
-};

package/src/utils/populateContexts.js

@@ -1,76 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-export function getLaunchContexts(questionnaire) {
-    if (questionnaire.extension && questionnaire.extension.length > 0) {
-        return questionnaire.extension.filter((extension) => isLaunchContext(extension));
-    }
-    return [];
-}
-export function isLaunchContext(extension) {
-    var _a, _b;
-    const hasLaunchContextName = extension.url ===
-        'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext' &&
-        !!((_a = extension.extension) === null || _a === void 0 ? void 0 : _a.find((ext) => ext.url === 'name' &&
-            (ext.valueId ||
-                (ext.valueCoding &&
-                    (ext.valueCoding.code === 'patient' ||
-                        ext.valueCoding.code === 'encounter' ||
-                        ext.valueCoding.code === 'location' ||
-                        ext.valueCoding.code === 'user' ||
-                        ext.valueCoding.code === 'study' ||
-                        ext.valueCoding.code === 'sourceQueries')))));
-    const hasLaunchContextType = !!((_b = extension.extension) === null || _b === void 0 ? void 0 : _b.find((ext) => ext.url === 'type' &&
-        ext.valueCode &&
-        (ext.valueCode === 'Patient' ||
-            ext.valueCode === 'Practitioner' ||
-            ext.valueCode === 'Encounter')));
-    return (extension.url ===
-        'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext' &&
-        hasLaunchContextName &&
-        hasLaunchContextType);
-}
-// get source query references
-export function getSourceQueries(questionnaire) {
-    if (questionnaire.extension && questionnaire.extension.length > 0) {
-        return questionnaire.extension.filter((extension) => isSourceQuery(extension));
-    }
-    return [];
-}
-export function isSourceQuery(extension) {
-    return (extension.url ===
-        'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-sourceQueries' &&
-        !!extension.valueReference);
-}
-/**
- * Filter x-fhir-query variables from questionnaire's extensions needed for population
- *
- * @author Sean Fong
- */
-export function getQuestionnaireLevelXFhirQueryVariables(questionnaire) {
-    if (questionnaire.extension && questionnaire.extension.length > 0) {
-        return questionnaire.extension.filter((extension) => isXFhirQueryVariable(extension));
-    }
-    return [];
-}
-export function isXFhirQueryVariable(extension) {
-    var _a, _b, _c;
-    return (extension.url === 'http://hl7.org/fhir/StructureDefinition/variable' &&
-        !!((_a = extension.valueExpression) === null || _a === void 0 ? void 0 : _a.name) &&
-        ((_b = extension.valueExpression) === null || _b === void 0 ? void 0 : _b.language) === 'application/x-fhir-query' &&
-        !!((_c = extension.valueExpression) === null || _c === void 0 ? void 0 : _c.expression));
-}
-//# sourceMappingURL=populateContexts.js.map

package/src/utils/populateContexts.js.map

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package/src/utils/populateInputParams.js

@@ -1,193 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-function createPatientSubject(questionnaire, patient) {
-    const subjectTypes = questionnaire.subjectType;
-    // If subjectTypes array is not empty AND "Patient" is not in the array, we cannot create a Patient subject reference.
-    if (subjectTypes && subjectTypes.length > 0) {
-        const patientSubject = subjectTypes.find((subject) => subject === 'Patient');
-        if (!patientSubject) {
-            return null;
-        }
-    }
-    return {
-        type: 'Patient',
-        reference: 'Patient/' + patient.id
-    };
-}
-function createCanonicalParam(canonicalUrl) {
-    return {
-        name: 'canonical',
-        valueString: canonicalUrl
-    };
-}
-// setting local parameter as false as we are calling $populate with an NPM package, not a server
-// package doesn't contain any fhir resources to "know" the context from
-function createLocalParam() {
-    return {
-        name: 'local',
-        valueBoolean: false
-    };
-}
-function createLaunchContextParam(launchContext, patient, user, encounter) {
-    var _a, _b;
-    const name = (_a = launchContext.extension[0].valueId) !== null && _a !== void 0 ? _a : (_b = launchContext.extension[0].valueCoding) === null || _b === void 0 ? void 0 : _b.code;
-    if (!name) {
-        return null;
-    }
-    // let resource :string
-    const resourceType = launchContext.extension[1].valueCode;
-    let resource;
-    switch (resourceType) {
-        case 'Patient':
-            resource = patient;
-            break;
-        case 'Practitioner':
-            resource = user;
-            break;
-        case 'Encounter':
-            resource = encounter;
-            break;
-        default:
-            return null;
-    }
-    if (!resource) {
-        return null;
-    }
-    return {
-        name: 'context',
-        part: [
-            {
-                name: 'name',
-                valueString: name
-            },
-            {
-                name: 'content',
-                resource: resource
-            }
-        ]
-    };
-}
-function createSourceQueryParams(sourceQuery, index) {
-    const reference = sourceQuery.valueReference.reference;
-    if (reference && reference.startsWith('#')) {
-        const containedReference = reference.slice(1);
-        return {
-            name: 'context',
-            part: [
-                {
-                    name: 'name',
-                    valueString: containedReference
-                },
-                {
-                    name: 'content',
-                    valueReference: sourceQuery.valueReference
-                }
-            ]
-        };
-    }
-    // if sourceQuery cannot be referenced to a contained bundle, return itself as a context
-    // this most likely shouldn't happen
-    return {
-        name: 'context',
-        part: [
-            {
-                name: 'name',
-                valueString: `sourceQuery${index}`
-            },
-            {
-                name: 'content',
-                valueReference: sourceQuery.valueReference
-            }
-        ]
-    };
-}
-function createVariableParam(variable) {
-    const query = variable.valueExpression.expression;
-    const resourceType = query.split('?')[0];
-    return {
-        name: 'context',
-        part: [
-            {
-                name: 'name',
-                valueString: variable.valueExpression.name
-            },
-            {
-                name: 'content',
-                valueReference: { reference: query, type: resourceType }
-            }
-        ]
-    };
-}
-/**
- * Define population input parameters without any batch response contexts
- *
- * @author Sean Fong
- */
-export function createPopulateInputParameters(questionnaire, patient, user, encounter, launchContexts, sourceQueries, questionnaireLevelVariables) {
-    var _a, _b, _c;
-    const patientSubject = createPatientSubject(questionnaire, patient);
-    if (!patientSubject) {
-        return null;
-    }
-    const inputParameters = {
-        resourceType: 'Parameters',
-        parameter: [
-            {
-                name: 'questionnaire',
-                resource: questionnaire
-            },
-            {
-                name: 'subject',
-                valueReference: patientSubject
-            }
-        ]
-    };
-    // canonical
-    if (questionnaire.url) {
-        (_a = inputParameters.parameter) === null || _a === void 0 ? void 0 : _a.push(createCanonicalParam(questionnaire.url));
-    }
-    // contexts
-    const contexts = [];
-    // add launch contexts
-    if (launchContexts.length > 0) {
-        for (const launchContext of launchContexts) {
-            const launchContextParam = createLaunchContextParam(launchContext, patient, user, encounter);
-            if (launchContextParam) {
-                contexts.push(launchContextParam);
-            }
-        }
-    }
-    // add source queries
-    if (sourceQueries.length > 0) {
-        for (const [index, sourceQuery] of sourceQueries.entries()) {
-            contexts.push(createSourceQueryParams(sourceQuery, index));
-        }
-    }
-    // add questionnaire-level variables
-    if (questionnaireLevelVariables.length > 0) {
-        for (const variable of questionnaireLevelVariables) {
-            contexts.push(createVariableParam(variable));
-        }
-    }
-    if (contexts.length > 0) {
-        (_b = inputParameters.parameter) === null || _b === void 0 ? void 0 : _b.push(...contexts);
-    }
-    // local
-    (_c = inputParameters.parameter) === null || _c === void 0 ? void 0 : _c.push(createLocalParam());
-    return inputParameters;
-}
-//# sourceMappingURL=populateInputParams.js.map

package/src/utils/populateInputParams.js.map

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package/src/utils/qItem.js

@@ -1,73 +0,0 @@
-/*
- * Copyright 2023 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-import { hasHiddenExtension } from './itemControl';
-import { getChoiceControlType } from './choice';
-import { QItemChoiceControl, QItemOpenChoiceControl } from '../interfaces/choice.enum';
-import { getOpenChoiceControlType } from './openChoice';
-/**
- * Test the given QItem on a series of checks to verify if the item should be displayed
- * Check if qItem has hidden attribute
- * Check if qItem fufilled its enableWhen criteria
- *
- * @author Sean Fong
- */
-export function isHidden(params) {
-    const { questionnaireItem, enableWhenIsActivated, enableWhenItems, enableWhenExpressions } = params;
-    if (hasHiddenExtension(questionnaireItem)) {
-        return true;
-    }
-    return isHiddenByEnableWhens({
-        linkId: questionnaireItem.linkId,
-        enableWhenIsActivated,
-        enableWhenItems,
-        enableWhenExpressions
-    });
-}
-export function isHiddenByEnableWhens(params) {
-    const { linkId, enableWhenIsActivated, enableWhenItems, enableWhenExpressions } = params;
-    if (enableWhenIsActivated) {
-        if (enableWhenItems[linkId]) {
-            return !enableWhenItems[linkId].isEnabled;
-        }
-        if (enableWhenExpressions[linkId]) {
-            return !enableWhenExpressions[linkId].isEnabled;
-        }
-    }
-    return false;
-}
-/**
- * Check if qItem is a repeat item AND if it isn't a checkbox item
- * Note: repeat checkbox items are rendered as multi-select checkbox instead of being rendered as a traditional repeat item
- *
- * @author Sean Fong
- */
-export function isRepeatItemAndNotCheckbox(qItem) {
-    const isCheckbox = getChoiceControlType(qItem) === QItemChoiceControl.Checkbox ||
-        getOpenChoiceControlType(qItem) === QItemOpenChoiceControl.Checkbox;
-    return !!qItem['repeats'] && !isCheckbox;
-}
-export function getXHtmlStringFromQuestionnaire(questionnaire) {
-    var _a, _b;
-    const itemControl = (_b = (_a = questionnaire._title) === null || _a === void 0 ? void 0 : _a.extension) === null || _b === void 0 ? void 0 : _b.find((extension) => extension.url === 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml');
-    if (itemControl) {
-        if (itemControl.valueString) {
-            return itemControl.valueString;
-        }
-    }
-    return null;
-}
-//# sourceMappingURL=qItem.js.map

package/src/utils/qItem.js.map

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