@abi-software/flatmapvuer 0.5.9 → 0.5.10

package/package.json

@@ -1,79 +1,79 @@
-{
-  "name": "@abi-software/flatmapvuer",
-  "version": "0.5.9",
-  "license": "Apache-2.0",
-  "main": "./dist/flatmapvuer.common.js",
-  "files": [
-    "dist/*",
-    "src/*",
-    "public/*",
-    "*.json",
-    "*.js"
-  ],
-  "repository": {
-    "type": "git",
-    "url": "https://github.com/ABI-Software/flatmapvuer.git"
-  },
-  "scripts": {
-    "start": "vue-cli-service serve",
-    "serve": "vue-cli-service serve --port 8082",
-    "build": "vue-cli-service build --dest test_html --mode staging",
-    "build-bundle": "vue-cli-service build --target lib --name flatmapvuer ./src/components/index.js",
-    "lint": "vue-cli-service lint",
-    "release:beta": "npm version prerelease --preid=beta; npm publish --tag beta",
-    "release:minor": "npm version minor; npm publish",
-    "release:patch": "npm version patch;  npm publish",
-    "changelog": "auto-changelog -p --output CHANGELOG.md --template keepachangelog",
-    "version": "npm run build-bundle;npm run changelog; git add CHANGELOG.md"
-  },
-  "dependencies": {
-    "@abi-software/flatmap-viewer": "^2.4.3",
-    "@abi-software/sparc-annotation": "0.0.5",
-    "@abi-software/svg-sprite": "^0.3.0",
-    "core-js": "^3.3.2",
-    "css-element-queries": "^1.2.2",
-    "current-script-polyfill": "^1.0.0",
-    "element-ui": "^2.13.0",
-    "file-loader": "^5.0.2",
-    "lodash": "^4.17.21",
-    "vue": "^2.6.10"
-  },
-  "devDependencies": {
-    "@vue/cli-plugin-babel": "^4.0.0",
-    "@vue/cli-plugin-eslint": "^4.0.0",
-    "@vue/cli-service": "^4.5.13",
-    "auto-changelog": "^2.4.0",
-    "babel-eslint": "^10.0.3",
-    "babel-plugin-component": "^1.1.1",
-    "base64-inline-loader": "^2.0.1",
-    "eslint": "^5.16.0",
-    "eslint-plugin-vue": "^5.0.0",
-    "node-sass": "^4.14.1",
-    "sass-loader": "^8.0.2",
-    "vue-template-compiler": "^2.6.10",
-    "webpack-node-externals": "^2.5.2"
-  },
-  "eslintConfig": {
-    "root": true,
-    "env": {
-      "node": true
-    },
-    "extends": [
-      "plugin:vue/essential",
-      "eslint:recommended"
-    ],
-    "rules": {},
-    "parserOptions": {
-      "parser": "babel-eslint"
-    }
-  },
-  "postcss": {
-    "plugins": {
-      "autoprefixer": {}
-    }
-  },
-  "browserslist": [
-    "> 1%",
-    "last 2 versions"
-  ]
-}
+{
+  "name": "@abi-software/flatmapvuer",
+  "version": "0.5.10",
+  "license": "Apache-2.0",
+  "main": "./dist/flatmapvuer.common.js",
+  "files": [
+    "dist/*",
+    "src/*",
+    "public/*",
+    "*.json",
+    "*.js"
+  ],
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/ABI-Software/flatmapvuer.git"
+  },
+  "scripts": {
+    "start": "vue-cli-service serve",
+    "serve": "vue-cli-service serve --port 8082",
+    "build": "vue-cli-service build --dest test_html --mode staging",
+    "build-bundle": "vue-cli-service build --target lib --name flatmapvuer ./src/components/index.js",
+    "lint": "vue-cli-service lint",
+    "release:beta": "npm version prerelease --preid=beta; npm publish --tag beta",
+    "release:minor": "npm version minor; npm publish",
+    "release:patch": "npm version patch;  npm publish",
+    "changelog": "auto-changelog -p --output CHANGELOG.md --template keepachangelog",
+    "version": "npm run build-bundle;npm run changelog; git add CHANGELOG.md"
+  },
+  "dependencies": {
+    "@abi-software/flatmap-viewer": "^2.4.3",
+    "@abi-software/sparc-annotation": "0.0.5",
+    "@abi-software/svg-sprite": "^0.3.0",
+    "core-js": "^3.3.2",
+    "css-element-queries": "^1.2.2",
+    "current-script-polyfill": "^1.0.0",
+    "element-ui": "^2.13.0",
+    "file-loader": "^5.0.2",
+    "lodash": "^4.17.21",
+    "vue": "^2.6.10"
+  },
+  "devDependencies": {
+    "@vue/cli-plugin-babel": "^4.0.0",
+    "@vue/cli-plugin-eslint": "^4.0.0",
+    "@vue/cli-service": "^4.5.13",
+    "auto-changelog": "^2.4.0",
+    "babel-eslint": "^10.0.3",
+    "babel-plugin-component": "^1.1.1",
+    "base64-inline-loader": "^2.0.1",
+    "eslint": "^5.16.0",
+    "eslint-plugin-vue": "^5.0.0",
+    "node-sass": "^4.14.1",
+    "sass-loader": "^8.0.2",
+    "vue-template-compiler": "^2.6.10",
+    "webpack-node-externals": "^2.5.2"
+  },
+  "eslintConfig": {
+    "root": true,
+    "env": {
+      "node": true
+    },
+    "extends": [
+      "plugin:vue/essential",
+      "eslint:recommended"
+    ],
+    "rules": {},
+    "parserOptions": {
+      "parser": "babel-eslint"
+    }
+  },
+  "postcss": {
+    "plugins": {
+      "autoprefixer": {}
+    }
+  },
+  "browserslist": [
+    "> 1%",
+    "last 2 versions"
+  ]
+}

package/public/index.html

@@ -1,17 +1,17 @@
-<!DOCTYPE html>
-<html lang="en">
-  <head>
-    <meta charset="utf-8">
-    <meta http-equiv="X-UA-Compatible" content="IE=edge">
-    <meta name="viewport" content="width=device-width,initial-scale=1.0">
-    <link rel="icon" href="<%= BASE_URL %>favicon.ico">
-    <title>flatmapvuer</title>
-  </head>
-  <body>
-    <noscript>
-      <strong>We're sorry but scaffoldvuer doesn't work properly without JavaScript enabled. Please enable it to continue.</strong>
-    </noscript>
-    <div id="app"></div>
-    <!-- built files will be auto injected -->
-  </body>
-</html>
+<!DOCTYPE html>
+<html lang="en">
+  <head>
+    <meta charset="utf-8">
+    <meta http-equiv="X-UA-Compatible" content="IE=edge">
+    <meta name="viewport" content="width=device-width,initial-scale=1.0">
+    <link rel="icon" href="<%= BASE_URL %>favicon.ico">
+    <title>flatmapvuer</title>
+  </head>
+  <body>
+    <noscript>
+      <strong>We're sorry but scaffoldvuer doesn't work properly without JavaScript enabled. Please enable it to continue.</strong>
+    </noscript>
+    <div id="app"></div>
+    <!-- built files will be auto injected -->
+  </body>
+</html>

package/src/App.vue

@@ -1,228 +1,228 @@
-<template>
-  <div id="app">
-    <el-popover
-      placement="bottom"
-      trigger="click"
-      width=500
-      class="popover"
-      :appendToBody=false
-      >
-      <div class="options-container">
-        <el-row :gutter="20">
-          <el-button @click="helpMode = !helpMode" size="mini">Help Mode</el-button>
-          <el-button @click="saveSettings()" size="mini">Save Settings</el-button>
-          <el-button :disabled="mapSettings.length === 0" @click="restoreSettings()" size="mini">Restore Settings</el-button>
-          <el-autocomplete class="search-box" placeholder="Search"
-            v-model="searchText"
-            :fetch-suggestions="fetchSuggestions"
-            @keyup.enter.native="search"
-            @select="search"
-            popper-class="autocomplete-popper">
-          </el-autocomplete>
-        </el-row>
-      </div>
-      <el-button class="options-button" icon="el-icon-setting" slot="reference">Options</el-button>
-    </el-popover>
-  
-    <MultiFlatmapVuer ref="multi" :availableSpecies="availableSpecies" 
-      @resource-selected="FlatmapSelected" :minZoom="minZoom"
-      @pan-zoom-callback="panZoomcallback" @open-map="openMap"
-      @ready="FlatmapReady" :featureInfo="featureInfo" :searchable="searchable"
-      :layerControl="layerControl"
-      :initial="initial" :pathControls="pathControls" :helpMode="helpMode"
-      :displayMinimap="true" :enableOpenMapUI="true" :flatmapAPI="flatmapAPI"/>
-  </div>
-</template>
-
-<script>
-/* eslint-disable no-alert, no-console */
-import Vue from "vue";
-import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue'
-import {
-  Autocomplete,
-  Button,
-  Col,
-  Popover,
-  Row,
-} from 'element-ui';
-import "./icons/mapicon-species-style.css";
-Vue.use(Autocomplete);
-Vue.use(Button);
-Vue.use(Col);
-Vue.use(Popover);
-Vue.use(Row);
-
-export default {
-  name: 'app',
-  methods: {
-    saveSettings: function() {
-      this.mapSettings.push(this.$refs.multi.getState());
-    },
-    restoreSettings: function() {
-      if (this.mapSettings.length > 0)
-        this.$refs.multi.setState(this.mapSettings.pop());
-    },
-    FlatmapSelected: function(resource) {
-      if (resource.eventType === "click") {
-        console.log('resource', resource);
-      }
-    },
-    FlatmapReady: function(component) {
-      console.log(component);
-      let taxon = component.mapImp.describes;
-      let id = component.mapImp.addMarker("UBERON:0000948");
-      window.flatmapImp =  component.mapImp;
-      component.enablePanZoomEvents(true);
-      //component.showPathwaysDrawer(false);
-      console.log(taxon, id);
-      //component.searchAndShowResult("heart");
-    },
-    panZoomcallback: function(payload) {
-      this.payload = payload
-    },
-    openMap: function (map) {
-      console.log(map)
-    },
-    fetchSuggestions: function(term, cb) {
-      if (term === "") {
-        cb([]);
-      } else {
-        const suggestions = [];
-        const results = this.$refs.multi.getCurrentFlatmap().searchSuggestions(term);
-        results.__featureIds.forEach(id => {
-          const annotation = this.$refs.multi.getCurrentFlatmap().mapImp.annotation(id);
-          if (annotation && annotation.label)
-            suggestions.push(annotation.label);
-        });
-        const unique = new Set(suggestions);
-        suggestions.length = 0;
-        for (const item of unique) {
-          suggestions.push({"value": "\"" + item +"\""});
-        }
-        cb(suggestions);
-      }
-    },
-    search: function() {
-      console.log(this.searchText)
-      this.$refs.multi.getCurrentFlatmap().searchAndShowResult(this.searchText, true);
-    }
-  },
-  data: function(){
-    return {
-      searchText: "",
-      featureInfo: true,
-      searchable: true,
-      pathControls: true,
-      layerControl: true,
-      minZoom: 4,
-      availableSpecies : {
-        "Human Female":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000383", iconClass:"mapicon-icon_human", displayWarning:true},
-        "Human Male":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000384", iconClass:"mapicon-icon_human", displayWarning:true},
-        "Rat":{taxo: "NCBITaxon:10114", iconClass:"mapicon-icon_rat", displayWarning:true, displayLatestChanges:true},
-        "Rat (NPO)":{taxo: "NCBITaxon:10116", iconClass:"mapicon-icon_rat", displayWarning:true, displayLatestChanges:true},
-        "Mouse":{taxo: "NCBITaxon:10090", iconClass:"mapicon-icon_mouse", displayWarning:true},
-        "Kember":{taxo: "ABI:1000001", displayWarning:true},
-        "Pig":{taxo: "NCBITaxon:9823", iconClass:"mapicon-icon_pig", displayWarning:true}, 
-        "Cat":{taxo: "NCBITaxon:9685", iconClass:"mapicon-icon_cat", displayWarning:true},
-        "Sample":{taxo: "NCBITaxon:1",  displayWarning:true},
-        "Functional Connectivity": {taxo: "FunctionalConnectivity", displayWarning:true},
-      },
-      tooltipContent: undefined,
-      tStyle: {
-        top: "200px",
-        left: "200px",
-        position: "absolute"
-      },
-      displayCloseButton: false,
-      initial: "Rat (NPO)",
-      helpMode: false,
-      mapSettings: [],
-      //flatmapAPI: "https://mapcore-demo.org/current/flatmap/v2/"
-      //flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v3/"
-      //flatmapAPI: "https://mapcore-demo.org/current/flatmap/v3/"
-      flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v4/"
-      //flatmapAPI: "https://mapcore-demo.org/fccb/flatmap/"
-      //flatmapAPI: "https://mapcore-demo.org/staging/flatmap/v1/"
-      // flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/"
-    }
-  },
-  components: {
-    MultiFlatmapVuer,
-  }
-}
-</script>
-
-<style lang="scss">
-@import "~element-ui/packages/theme-chalk/src/autocomplete";
-@import "~element-ui/packages/theme-chalk/src/button";
-@import "~element-ui/packages/theme-chalk/src/col";
-@import "~element-ui/packages/theme-chalk/src/popover";
-@import "~element-ui/packages/theme-chalk/src/row";
-
-#app {
-  font-family: 'Asap', 'Avenir', Helvetica, Arial, sans-serif;
-  -webkit-font-smoothing: antialiased;
-  -moz-osx-font-smoothing: grayscale;
-  text-align: center;
-  color: #2c3e50;
-  height:100%;
-  width: 100%;
-  position:absolute;
-}
-
-.maplibregl-ctrl-top-left .maplibregl-ctrl {
-  margin-top:120px;
-}
-
-.search-box {
-  margin-top: 2px;
-  height:28px;
-  ::v-deep .el-input__inner {
-    background-color: $background;
-    height:28px;
-    line-height:28px;
-    border: 1px solid rgb(144, 147, 153);
-    border-radius: 4px;
-    &:focus {
-      border-color: $app-primary-color;
-    }
-  }
-}
-
-::v-deep .autocomplete-popper {
-  min-width:137px!important;
-  width: auto!important;
-}
-
-body {
-  margin: 0px;
-}
-
-.maplibregl-ctrl-top-left .maplibregl-ctrl {
-  margin-top:120px;
-}
-
-.popover{
-  top:5px;
-  right:calc( 50% - 20px);
-  position:absolute;
-  z-index:1000;
-}
-
-.el-row {
-  margin-bottom: 5px;
-  &:last-child {
-    margin-bottom: 0;
-  }
-}
-
-.options-container{
-
-  text-align: center;
-}
-
-.el-tabs__content {
-  height:100%;
-}
-
-</style>
+<template>
+  <div id="app">
+    <el-popover
+      placement="bottom"
+      trigger="click"
+      width=500
+      class="popover"
+      :appendToBody=false
+      >
+      <div class="options-container">
+        <el-row :gutter="20">
+          <el-button @click="helpMode = !helpMode" size="mini">Help Mode</el-button>
+          <el-button @click="saveSettings()" size="mini">Save Settings</el-button>
+          <el-button :disabled="mapSettings.length === 0" @click="restoreSettings()" size="mini">Restore Settings</el-button>
+          <el-autocomplete class="search-box" placeholder="Search"
+            v-model="searchText"
+            :fetch-suggestions="fetchSuggestions"
+            @keyup.enter.native="search"
+            @select="search"
+            popper-class="autocomplete-popper">
+          </el-autocomplete>
+        </el-row>
+      </div>
+      <el-button class="options-button" icon="el-icon-setting" slot="reference">Options</el-button>
+    </el-popover>
+  
+    <MultiFlatmapVuer ref="multi" :availableSpecies="availableSpecies" 
+      @resource-selected="FlatmapSelected" :minZoom="minZoom"
+      @pan-zoom-callback="panZoomcallback" @open-map="openMap"
+      @ready="FlatmapReady" :featureInfo="featureInfo" :searchable="searchable"
+      :layerControl="layerControl"
+      :initial="initial" :pathControls="pathControls" :helpMode="helpMode"
+      :displayMinimap="true" :enableOpenMapUI="true" :flatmapAPI="flatmapAPI"/>
+  </div>
+</template>
+
+<script>
+/* eslint-disable no-alert, no-console */
+import Vue from "vue";
+import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue'
+import {
+  Autocomplete,
+  Button,
+  Col,
+  Popover,
+  Row,
+} from 'element-ui';
+import "./icons/mapicon-species-style.css";
+Vue.use(Autocomplete);
+Vue.use(Button);
+Vue.use(Col);
+Vue.use(Popover);
+Vue.use(Row);
+
+export default {
+  name: 'app',
+  methods: {
+    saveSettings: function() {
+      this.mapSettings.push(this.$refs.multi.getState());
+    },
+    restoreSettings: function() {
+      if (this.mapSettings.length > 0)
+        this.$refs.multi.setState(this.mapSettings.pop());
+    },
+    FlatmapSelected: function(resource) {
+      if (resource.eventType === "click") {
+        console.log('resource', resource);
+      }
+    },
+    FlatmapReady: function(component) {
+      console.log(component);
+      let taxon = component.mapImp.describes;
+      let id = component.mapImp.addMarker("UBERON:0000948");
+      window.flatmapImp =  component.mapImp;
+      component.enablePanZoomEvents(true);
+      //component.showPathwaysDrawer(false);
+      console.log(taxon, id);
+      //component.searchAndShowResult("heart");
+    },
+    panZoomcallback: function(payload) {
+      this.payload = payload
+    },
+    openMap: function (map) {
+      console.log(map)
+    },
+    fetchSuggestions: function(term, cb) {
+      if (term === "") {
+        cb([]);
+      } else {
+        const suggestions = [];
+        const results = this.$refs.multi.getCurrentFlatmap().searchSuggestions(term);
+        results.__featureIds.forEach(id => {
+          const annotation = this.$refs.multi.getCurrentFlatmap().mapImp.annotation(id);
+          if (annotation && annotation.label)
+            suggestions.push(annotation.label);
+        });
+        const unique = new Set(suggestions);
+        suggestions.length = 0;
+        for (const item of unique) {
+          suggestions.push({"value": "\"" + item +"\""});
+        }
+        cb(suggestions);
+      }
+    },
+    search: function() {
+      console.log(this.searchText)
+      this.$refs.multi.getCurrentFlatmap().searchAndShowResult(this.searchText, true);
+    }
+  },
+  data: function(){
+    return {
+      searchText: "",
+      featureInfo: true,
+      searchable: true,
+      pathControls: true,
+      layerControl: true,
+      minZoom: 4,
+      availableSpecies : {
+        "Human Female":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000383", iconClass:"mapicon-icon_human", displayWarning:true},
+        "Human Male":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000384", iconClass:"mapicon-icon_human", displayWarning:true},
+        "Rat":{taxo: "NCBITaxon:10114", iconClass:"mapicon-icon_rat", displayWarning:true, displayLatestChanges:true},
+        "Rat (NPO)":{taxo: "NCBITaxon:10116", iconClass:"mapicon-icon_rat", displayWarning:true, displayLatestChanges:true},
+        "Mouse":{taxo: "NCBITaxon:10090", iconClass:"mapicon-icon_mouse", displayWarning:true},
+        "Kember":{taxo: "ABI:1000001", displayWarning:true},
+        "Pig":{taxo: "NCBITaxon:9823", iconClass:"mapicon-icon_pig", displayWarning:true}, 
+        "Cat":{taxo: "NCBITaxon:9685", iconClass:"mapicon-icon_cat", displayWarning:true},
+        "Sample":{taxo: "NCBITaxon:1",  displayWarning:true},
+        "Functional Connectivity": {taxo: "FunctionalConnectivity", displayWarning:true},
+      },
+      tooltipContent: undefined,
+      tStyle: {
+        top: "200px",
+        left: "200px",
+        position: "absolute"
+      },
+      displayCloseButton: false,
+      initial: "Rat (NPO)",
+      helpMode: false,
+      mapSettings: [],
+      //flatmapAPI: "https://mapcore-demo.org/current/flatmap/v2/"
+      //flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v3/"
+      //flatmapAPI: "https://mapcore-demo.org/current/flatmap/v3/"
+      flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v4/"
+      //flatmapAPI: "https://mapcore-demo.org/fccb/flatmap/"
+      //flatmapAPI: "https://mapcore-demo.org/staging/flatmap/v1/"
+      // flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/"
+    }
+  },
+  components: {
+    MultiFlatmapVuer,
+  }
+}
+</script>
+
+<style lang="scss">
+@import "~element-ui/packages/theme-chalk/src/autocomplete";
+@import "~element-ui/packages/theme-chalk/src/button";
+@import "~element-ui/packages/theme-chalk/src/col";
+@import "~element-ui/packages/theme-chalk/src/popover";
+@import "~element-ui/packages/theme-chalk/src/row";
+
+#app {
+  font-family: 'Asap', 'Avenir', Helvetica, Arial, sans-serif;
+  -webkit-font-smoothing: antialiased;
+  -moz-osx-font-smoothing: grayscale;
+  text-align: center;
+  color: #2c3e50;
+  height:100%;
+  width: 100%;
+  position:absolute;
+}
+
+.maplibregl-ctrl-top-left .maplibregl-ctrl {
+  margin-top:120px;
+}
+
+.search-box {
+  margin-top: 2px;
+  height:28px;
+  ::v-deep .el-input__inner {
+    background-color: $background;
+    height:28px;
+    line-height:28px;
+    border: 1px solid rgb(144, 147, 153);
+    border-radius: 4px;
+    &:focus {
+      border-color: $app-primary-color;
+    }
+  }
+}
+
+::v-deep .autocomplete-popper {
+  min-width:137px!important;
+  width: auto!important;
+}
+
+body {
+  margin: 0px;
+}
+
+.maplibregl-ctrl-top-left .maplibregl-ctrl {
+  margin-top:120px;
+}
+
+.popover{
+  top:5px;
+  right:calc( 50% - 20px);
+  position:absolute;
+  z-index:1000;
+}
+
+.el-row {
+  margin-bottom: 5px;
+  &:last-child {
+    margin-bottom: 0;
+  }
+}
+
+.options-container{
+
+  text-align: center;
+}
+
+.el-tabs__content {
+  height:100%;
+}
+
+</style>