@abi-software/flatmapvuer 0.5.9 → 0.5.10

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Files changed (41) hide show
  1. package/CHANGELOG.md +402 -402
  2. package/LICENSE +201 -201
  3. package/README.md +105 -105
  4. package/babel.config.js +14 -14
  5. package/package-lock.json +18473 -18473
  6. package/package.json +79 -79
  7. package/public/index.html +17 -17
  8. package/src/App.vue +228 -228
  9. package/src/assets/_variables.scss +43 -43
  10. package/src/assets/styles.scss +7 -7
  11. package/src/components/AnnotationTool.vue +403 -403
  12. package/src/components/EventBus.js +2 -2
  13. package/src/components/ExternalResourceCard.vue +98 -98
  14. package/src/components/FlatmapVuer.vue +2070 -2059
  15. package/src/components/MultiFlatmapVuer.vue +535 -536
  16. package/src/components/ProvenancePopup.vue +422 -422
  17. package/src/components/SelectionsGroup.vue +249 -249
  18. package/src/components/Tooltip.vue +52 -52
  19. package/src/components/TreeControls.vue +231 -231
  20. package/src/components/index.js +9 -9
  21. package/src/components/legends/DynamicLegends.vue +112 -112
  22. package/src/components/legends/SvgLegends.vue +67 -67
  23. package/src/icons/fonts/mapicon-species.eot +0 -0
  24. package/src/icons/fonts/mapicon-species.svg +14 -14
  25. package/src/icons/fonts/mapicon-species.ttf +0 -0
  26. package/src/icons/fonts/mapicon-species.woff +0 -0
  27. package/src/icons/mapicon-species-style.css +42 -42
  28. package/src/icons/yellowstar.js +5 -5
  29. package/src/legends/legend.svg +25 -25
  30. package/src/main.js +8 -8
  31. package/src/nerve-map.js +99 -0
  32. package/src/services/flatmapQueries.js +415 -415
  33. package/vue.config.js +31 -31
  34. package/dist/demo.html +0 -10
  35. package/dist/flatmapvuer.common.js +0 -22741
  36. package/dist/flatmapvuer.common.js.map +0 -1
  37. package/dist/flatmapvuer.css +0 -1
  38. package/dist/flatmapvuer.umd.js +0 -22751
  39. package/dist/flatmapvuer.umd.js.map +0 -1
  40. package/dist/flatmapvuer.umd.min.js +0 -4
  41. package/dist/flatmapvuer.umd.min.js.map +0 -1
package/src/nerve-map.js ADDED
@@ -0,0 +1,99 @@
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+ // nerve-map.js
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+
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+ // A temporary hard-coded mapping file used for demonstrating the types of info
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+ // neural paths will show on click
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+
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+ export default {
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+ 'UBERON:0011390': {
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+ title: 'Pudendal nerve', components: 'sensory (afferent) neuron', start: 'First sacral spinal cord segment, Sixth lumbar spinal cord segment', distribution: 'External urethral sphincter', actions: [{
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+ title: "View source",
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+ resource: "https://www.ncbi.nlm.nih.gov/books/NBK554736/",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0003715': {
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+ title: 'Splanchnic nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0001884': {
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+ title: 'Phrenic nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'ILX:0738374': {
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+ title: 'External laryngeal nerve', components: 'visceral efferent', start: undefined, distribution: 'cricothyroid', actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'ILX:0738309': {
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+ title: 'Internal laryngeal nerve', components: 'general afferent, general visceral affarent, visceral parasympathetic', start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0018675': {
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+ title: 'Pelvic splanchnic nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0018683': {
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+ title: 'Lumbar splanchnic nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0001650': {
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+ title: 'Hypoglossal nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0005303': {
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+ title: 'Hypogastric nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }],
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+ },
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+ 'UBERON:0001759': {
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+ title: 'Vagus nerve', components: undefined, start: undefined, distribution: undefined, actions: [{
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+ title: "View source",
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+ resource: "https://doi.org/10.1002/ca.23296",
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+ type: "URL"
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+ }, {
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+ title: "Explore data",
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+ label: "Stimulation",
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+ resource: "https://sparc.science/data?type=dataset&q=stimulation",
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+ type: "Search",
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+ nervePath: true,
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+ filter: {
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+ facet: 'Vagus Nerve',
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+ term: 'genotype'
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+ },
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+ },
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+ ],
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+ },
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+ 'http://uri.interlex.org/base/ilx_0738443': {
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+ title: 'Fascicle of Vagus Nerve', components: undefined, start: undefined, distribution: undefined, actions: [ {
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+ title: "View dataset",
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+ label: "Stimulation",
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+ resource: "https://sparc.science/datasets/64?type=dataset",
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+ type: "URL",
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+ nervePath: false,
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+ },
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+ ],
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+ }
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+
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+ }