workflow_manager 0.8.1 → 0.9.1
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- checksums.yaml +4 -4
- data/Gemfile.lock +10 -9
- data/lib/workflow_manager/cluster.rb +1 -1
- data/lib/workflow_manager/version.rb +1 -1
- data/start_workflow_manager.sh +5 -5
- metadata +6 -6
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA256:
|
3
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-
metadata.gz:
|
4
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-
data.tar.gz:
|
3
|
+
metadata.gz: 901f1313164cec14ee12e138a79c256171f3563c0b9b3ef59d20b4b7643de84e
|
4
|
+
data.tar.gz: c1851c5d48ff861c2d48bb709daba6721ae47e7b81380ba2e157c5a553325f8f
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5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
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-
data.tar.gz:
|
6
|
+
metadata.gz: 0e356a93835de217df2b3e9777dc2eacbcff1489fdbba20b91107779438647b45a4e482ec3096eaab30056d62531d31d0dc5a6f60d5e8a828fffdf2c74faeb15
|
7
|
+
data.tar.gz: 03bbb3c6064921a0726b3fa2e50f088a76a0d328595278e8dc36ca104f921634f375bbcc565883d3519347b7079c5a94d6f9f4a23ac2c13ee4e0dd6a409f6218
|
data/Gemfile.lock
CHANGED
@@ -1,25 +1,26 @@
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|
1
1
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PATH
|
2
2
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remote: .
|
3
3
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specs:
|
4
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-
workflow_manager (0.
|
4
|
+
workflow_manager (0.9.0)
|
5
5
|
|
6
6
|
GEM
|
7
7
|
remote: https://rubygems.org/
|
8
8
|
specs:
|
9
|
-
concurrent-ruby (1.2.
|
9
|
+
concurrent-ruby (1.2.3)
|
10
10
|
connection_pool (2.4.1)
|
11
|
-
rack (3.0.
|
12
|
-
redis (5.0.
|
13
|
-
redis-client (>= 0.
|
14
|
-
redis-client (0.
|
11
|
+
rack (3.0.9)
|
12
|
+
redis (5.0.8)
|
13
|
+
redis-client (>= 0.17.0)
|
14
|
+
redis-client (0.19.1)
|
15
15
|
connection_pool
|
16
|
-
sidekiq (7.1
|
16
|
+
sidekiq (7.2.1)
|
17
17
|
concurrent-ruby (< 2)
|
18
18
|
connection_pool (>= 2.3.0)
|
19
19
|
rack (>= 2.2.4)
|
20
|
-
redis-client (>= 0.
|
20
|
+
redis-client (>= 0.19.0)
|
21
21
|
|
22
22
|
PLATFORMS
|
23
|
+
ruby
|
23
24
|
x86_64-linux
|
24
25
|
|
25
26
|
DEPENDENCIES
|
@@ -28,4 +29,4 @@ DEPENDENCIES
|
|
28
29
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workflow_manager!
|
29
30
|
|
30
31
|
BUNDLED WITH
|
31
|
-
2.
|
32
|
+
2.5.5
|
@@ -549,7 +549,7 @@ module WorkflowManager
|
|
549
549
|
|
550
550
|
class FGCZDebian10DemoCluster < FGCZDebian10Cluster
|
551
551
|
def copy_commands(org_dir, dest_parent_dir, now=nil, queue="light")
|
552
|
-
commands = ["
|
552
|
+
commands = ["rsync -r #{org_dir} #{dest_parent_dir}/"]
|
553
553
|
end
|
554
554
|
def delete_command(target)
|
555
555
|
command = "rm -rf #{target}"
|
data/start_workflow_manager.sh
CHANGED
@@ -1,12 +1,12 @@
|
|
1
1
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#!/usr/bin/bash
|
2
2
|
source /usr/local/ngseq/etc/lmod_profile
|
3
|
-
module load Dev/Ruby/3.
|
4
|
-
module load Tools/Redis/7.
|
5
|
-
|
3
|
+
module load Dev/Ruby/3.2.3
|
4
|
+
module load Tools/Redis/7.2.4
|
5
|
+
. "/usr/local/ngseq/miniconda3/etc/profile.d/conda.sh"
|
6
|
+
conda activate gtools_env
|
6
7
|
which python
|
7
8
|
which g-sub
|
8
9
|
which g-req
|
9
10
|
mkdir -p logs
|
10
11
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mkdir -p dbs
|
11
|
-
|
12
|
-
bundle exec workflow_manager -d druby://fgcz-h-032:40001
|
12
|
+
bundle exec workflow_manager -d druby://fgcz-h-031:40001
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: workflow_manager
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 0.9.1
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Functional Genomics Center Zurich
|
8
|
-
autorequire:
|
8
|
+
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2024-04-05 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: bundler
|
@@ -98,7 +98,7 @@ homepage: ''
|
|
98
98
|
licenses:
|
99
99
|
- MIT
|
100
100
|
metadata: {}
|
101
|
-
post_install_message:
|
101
|
+
post_install_message:
|
102
102
|
rdoc_options: []
|
103
103
|
require_paths:
|
104
104
|
- lib
|
@@ -113,8 +113,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
113
113
|
- !ruby/object:Gem::Version
|
114
114
|
version: '0'
|
115
115
|
requirements: []
|
116
|
-
rubygems_version: 3.
|
117
|
-
signing_key:
|
116
|
+
rubygems_version: 3.5.5
|
117
|
+
signing_key:
|
118
118
|
specification_version: 4
|
119
119
|
summary: Workflow Manager manages job submissions using dRuby.
|
120
120
|
test_files:
|