workflow_manager 0.8.1 → 0.9.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +10 -9
- data/lib/workflow_manager/cluster.rb +1 -1
- data/lib/workflow_manager/version.rb +1 -1
- data/start_workflow_manager.sh +5 -5
- metadata +6 -6
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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3
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metadata.gz: 901f1313164cec14ee12e138a79c256171f3563c0b9b3ef59d20b4b7643de84e
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4
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data.tar.gz: c1851c5d48ff861c2d48bb709daba6721ae47e7b81380ba2e157c5a553325f8f
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 0e356a93835de217df2b3e9777dc2eacbcff1489fdbba20b91107779438647b45a4e482ec3096eaab30056d62531d31d0dc5a6f60d5e8a828fffdf2c74faeb15
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7
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data.tar.gz: 03bbb3c6064921a0726b3fa2e50f088a76a0d328595278e8dc36ca104f921634f375bbcc565883d3519347b7079c5a94d6f9f4a23ac2c13ee4e0dd6a409f6218
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data/Gemfile.lock
CHANGED
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@@ -1,25 +1,26 @@
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PATH
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remote: .
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specs:
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-
workflow_manager (0.
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workflow_manager (0.9.0)
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GEM
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remote: https://rubygems.org/
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specs:
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concurrent-ruby (1.2.
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concurrent-ruby (1.2.3)
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connection_pool (2.4.1)
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rack (3.0.
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redis (5.0.
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redis-client (>= 0.
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redis-client (0.
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rack (3.0.9)
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redis (5.0.8)
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redis-client (>= 0.17.0)
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redis-client (0.19.1)
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connection_pool
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sidekiq (7.1
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sidekiq (7.2.1)
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concurrent-ruby (< 2)
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connection_pool (>= 2.3.0)
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rack (>= 2.2.4)
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redis-client (>= 0.
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redis-client (>= 0.19.0)
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PLATFORMS
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ruby
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x86_64-linux
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DEPENDENCIES
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@@ -28,4 +29,4 @@ DEPENDENCIES
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workflow_manager!
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BUNDLED WITH
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2.
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2.5.5
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@@ -549,7 +549,7 @@ module WorkflowManager
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class FGCZDebian10DemoCluster < FGCZDebian10Cluster
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def copy_commands(org_dir, dest_parent_dir, now=nil, queue="light")
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commands = ["
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commands = ["rsync -r #{org_dir} #{dest_parent_dir}/"]
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end
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def delete_command(target)
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command = "rm -rf #{target}"
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data/start_workflow_manager.sh
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@@ -1,12 +1,12 @@
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#!/usr/bin/bash
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source /usr/local/ngseq/etc/lmod_profile
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module load Dev/Ruby/3.
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module load Tools/Redis/7.
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module load Dev/Ruby/3.2.3
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module load Tools/Redis/7.2.4
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. "/usr/local/ngseq/miniconda3/etc/profile.d/conda.sh"
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conda activate gtools_env
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which python
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which g-sub
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which g-req
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mkdir -p logs
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mkdir -p dbs
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-
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bundle exec workflow_manager -d druby://fgcz-h-032:40001
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bundle exec workflow_manager -d druby://fgcz-h-031:40001
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metadata
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--- !ruby/object:Gem::Specification
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name: workflow_manager
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version: !ruby/object:Gem::Version
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version: 0.
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version: 0.9.1
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platform: ruby
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authors:
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- Functional Genomics Center Zurich
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autorequire:
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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date: 2024-04-05 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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@@ -98,7 +98,7 @@ homepage: ''
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licenses:
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- MIT
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metadata: {}
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post_install_message:
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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@@ -113,8 +113,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubygems_version: 3.
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signing_key:
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rubygems_version: 3.5.5
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signing_key:
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specification_version: 4
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summary: Workflow Manager manages job submissions using dRuby.
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test_files:
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