workflow-to-galaxy 0.3.4 → 0.3.5

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Files changed (14) hide show
  1. data/Rakefile +2 -2
  2. data/doc/rdoc/CHANGES.html +92 -89
  3. data/doc/rdoc/LICENSE.html +91 -89
  4. data/doc/rdoc/README.html +110 -107
  5. data/doc/rdoc/String.html +163 -148
  6. data/doc/rdoc/WorkflowToGalaxy.html +149 -121
  7. data/doc/rdoc/WorkflowToGalaxy/GalaxyTool.html +227 -201
  8. data/doc/rdoc/WorkflowToGalaxy/Workflows.html +127 -115
  9. data/doc/rdoc/created.rid +7 -7
  10. data/doc/rdoc/index.html +87 -104
  11. data/doc/rdoc/js/darkfish.js +62 -99
  12. data/doc/rdoc/js/jquery.js +29 -15
  13. data/doc/rdoc/rdoc.css +339 -119
  14. metadata +101 -116
metadata CHANGED
@@ -1,181 +1,166 @@
1
- --- !ruby/object:Gem::Specification
1
+ --- !ruby/object:Gem::Specification
2
2
  name: workflow-to-galaxy
3
- version: !ruby/object:Gem::Version
4
- hash: 27
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.3.5
5
5
  prerelease:
6
- segments:
7
- - 0
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- - 3
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- - 4
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- version: 0.3.4
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  platform: ruby
12
- authors:
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+ authors:
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8
  - Kostas Karasavvas
14
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  - Finn Bacall
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  autorequire:
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  bindir: bin
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  cert_chain: []
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-
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- date: 2012-10-10 00:00:00 Z
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- dependencies:
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- - !ruby/object:Gem::Dependency
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+ date: 2012-12-03 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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  name: myexperiment-rest
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- prerelease: false
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- requirement: &id001 !ruby/object:Gem::Requirement
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+ requirement: !ruby/object:Gem::Requirement
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  none: false
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- requirements:
19
+ requirements:
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  - - ~>
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- - !ruby/object:Gem::Version
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- hash: 19
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- segments:
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- - 0
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- - 3
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- - 0
21
+ - !ruby/object:Gem::Version
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  version: 0.3.0
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  type: :runtime
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- version_requirements: *id001
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- - !ruby/object:Gem::Dependency
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- name: taverna-t2flow
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  prerelease: false
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- requirement: &id002 !ruby/object:Gem::Requirement
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+ version_requirements: !ruby/object:Gem::Requirement
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  none: false
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- requirements:
27
+ requirements:
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28
  - - ~>
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- - !ruby/object:Gem::Version
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- hash: 19
46
- segments:
47
- - 0
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- - 3
49
- - 0
29
+ - !ruby/object:Gem::Version
50
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  version: 0.3.0
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+ - !ruby/object:Gem::Dependency
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+ name: taverna-t2flow
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 0.4.0
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  type: :runtime
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- version_requirements: *id002
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- - !ruby/object:Gem::Dependency
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- name: t2-server
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  prerelease: false
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- requirement: &id003 !ruby/object:Gem::Requirement
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+ version_requirements: !ruby/object:Gem::Requirement
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  none: false
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- requirements:
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+ requirements:
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  - - ~>
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- - !ruby/object:Gem::Version
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- hash: 5
62
- segments:
63
- - 0
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- - 6
65
- - 1
45
+ - !ruby/object:Gem::Version
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+ version: 0.4.0
47
+ - !ruby/object:Gem::Dependency
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+ name: t2-server
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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  version: 0.6.1
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  type: :runtime
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- version_requirements: *id003
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- - !ruby/object:Gem::Dependency
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- name: rubyzip
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  prerelease: false
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- requirement: &id004 !ruby/object:Gem::Requirement
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+ version_requirements: !ruby/object:Gem::Requirement
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  none: false
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- requirements:
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+ requirements:
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  - - ~>
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- - !ruby/object:Gem::Version
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- hash: 51
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- segments:
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- - 0
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- - 9
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- - 4
61
+ - !ruby/object:Gem::Version
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+ version: 0.6.1
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+ - !ruby/object:Gem::Dependency
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+ name: rubyzip
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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  version: 0.9.4
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  type: :runtime
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- version_requirements: *id004
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- description: This script acquires information for a taverna 2 workflow from myExperiment (or from a file) and generates a Galaxy tool (.xml and .rb files).
86
- email:
72
+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 0.9.4
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+ description: This script acquires information for a taverna 2 workflow from myExperiment
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+ (or from a file) and generates a Galaxy tool (.xml and .rb files).
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+ email:
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  - finn.bacall@cs.man.ac.uk
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  - R.M.van_Schouwen@lumc.nl
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- executables:
84
+ executables:
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  - workflow_to_galaxy.rb
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  extensions: []
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-
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- extra_rdoc_files:
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+ extra_rdoc_files:
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  - README
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  - LICENSE
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  - CHANGES
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- files:
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+ files:
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  - LICENSE
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  - README
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  - CHANGES
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  - Rakefile
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  - bin/workflow_to_galaxy.rb
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  - lib/workflow-to-galaxy.rb
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- - lib/workflow-to-galaxy/galaxy.rb
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  - lib/workflow-to-galaxy/constants.rb
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+ - lib/workflow-to-galaxy/galaxy.rb
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+ - doc/rdoc/WorkflowToGalaxy.html
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+ - doc/rdoc/created.rid
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+ - doc/rdoc/table_of_contents.html
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+ - doc/rdoc/LICENSE.html
104
+ - doc/rdoc/CHANGES.html
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+ - doc/rdoc/index.html
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  - doc/rdoc/rdoc.css
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- - doc/rdoc/images/page_white_text.png
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- - doc/rdoc/images/find.png
109
- - doc/rdoc/images/bullet_toggle_minus.png
110
- - doc/rdoc/images/transparent.png
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+ - doc/rdoc/js/searcher.js
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+ - doc/rdoc/js/search.js
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+ - doc/rdoc/js/jquery.js
110
+ - doc/rdoc/js/search_index.js
111
+ - doc/rdoc/js/navigation.js
112
+ - doc/rdoc/js/darkfish.js
113
+ - doc/rdoc/String.html
114
+ - doc/rdoc/README.html
115
+ - doc/rdoc/images/wrench.png
116
+ - doc/rdoc/images/zoom.png
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  - doc/rdoc/images/plugin.png
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- - doc/rdoc/images/bullet_black.png
118
+ - doc/rdoc/images/date.png
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  - doc/rdoc/images/tag_green.png
114
- - doc/rdoc/images/macFFBgHack.png
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- - doc/rdoc/images/wrench.png
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- - doc/rdoc/images/add.png
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- - doc/rdoc/images/page_green.png
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- - doc/rdoc/images/brick_link.png
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- - doc/rdoc/images/bullet_toggle_plus.png
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  - doc/rdoc/images/delete.png
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  - doc/rdoc/images/package.png
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- - doc/rdoc/images/tag_blue.png
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- - doc/rdoc/images/wrench_orange.png
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+ - doc/rdoc/images/page_green.png
123
+ - doc/rdoc/images/brick_link.png
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  - doc/rdoc/images/brick.png
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- - doc/rdoc/images/zoom.png
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- - doc/rdoc/images/date.png
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- - doc/rdoc/images/bug.png
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  - doc/rdoc/images/ruby.png
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+ - doc/rdoc/images/bug.png
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+ - doc/rdoc/images/wrench_orange.png
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+ - doc/rdoc/images/bullet_toggle_plus.png
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+ - doc/rdoc/images/add.png
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+ - doc/rdoc/images/page_white_text.png
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+ - doc/rdoc/images/tag_blue.png
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  - doc/rdoc/images/loadingAnimation.gif
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+ - doc/rdoc/images/bullet_black.png
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+ - doc/rdoc/images/macFFBgHack.png
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  - doc/rdoc/images/page_white_width.png
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- - doc/rdoc/String.html
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- - doc/rdoc/WorkflowToGalaxy.html
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- - doc/rdoc/table_of_contents.html
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- - doc/rdoc/created.rid
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- - doc/rdoc/js/search_index.js
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- - doc/rdoc/js/search.js
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- - doc/rdoc/js/jquery.js
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- - doc/rdoc/js/navigation.js
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- - doc/rdoc/js/darkfish.js
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- - doc/rdoc/js/searcher.js
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- - doc/rdoc/index.html
136
+ - doc/rdoc/images/find.png
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+ - doc/rdoc/images/bullet_toggle_minus.png
138
+ - doc/rdoc/images/transparent.png
142
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  - doc/rdoc/WorkflowToGalaxy/Workflows.html
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  - doc/rdoc/WorkflowToGalaxy/GalaxyTool.html
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- - doc/rdoc/CHANGES.html
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- - doc/rdoc/LICENSE.html
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- - doc/rdoc/README.html
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  homepage:
148
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  licenses: []
149
-
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  post_install_message:
151
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  rdoc_options: []
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-
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- require_paths:
145
+ require_paths:
154
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  - lib
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- required_ruby_version: !ruby/object:Gem::Requirement
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+ required_ruby_version: !ruby/object:Gem::Requirement
156
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  none: false
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- hash: 3
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- segments:
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- - 0
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- version: "0"
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- required_rubygems_version: !ruby/object:Gem::Requirement
149
+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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  none: false
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- hash: 3
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- segments:
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- - 0
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- version: "0"
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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  requirements: []
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-
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  rubyforge_project:
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- rubygems_version: 1.8.17
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+ rubygems_version: 1.8.24
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  signing_key:
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  specification_version: 3
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- summary: This script acquires information for a taverna 2 workflow from myExperiment (or from a file) and generates a Galaxy tool (.xml and .rb files).
164
+ summary: This script acquires information for a taverna 2 workflow from myExperiment
165
+ (or from a file) and generates a Galaxy tool (.xml and .rb files).
180
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  test_files: []
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-