workflow-to-galaxy 0.3.4 → 0.3.5
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- data/Rakefile +2 -2
- data/doc/rdoc/CHANGES.html +92 -89
- data/doc/rdoc/LICENSE.html +91 -89
- data/doc/rdoc/README.html +110 -107
- data/doc/rdoc/String.html +163 -148
- data/doc/rdoc/WorkflowToGalaxy.html +149 -121
- data/doc/rdoc/WorkflowToGalaxy/GalaxyTool.html +227 -201
- data/doc/rdoc/WorkflowToGalaxy/Workflows.html +127 -115
- data/doc/rdoc/created.rid +7 -7
- data/doc/rdoc/index.html +87 -104
- data/doc/rdoc/js/darkfish.js +62 -99
- data/doc/rdoc/js/jquery.js +29 -15
- data/doc/rdoc/rdoc.css +339 -119
- metadata +101 -116
metadata
CHANGED
@@ -1,181 +1,166 @@
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1
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-
--- !ruby/object:Gem::Specification
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1
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+
--- !ruby/object:Gem::Specification
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2
2
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name: workflow-to-galaxy
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3
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-
version: !ruby/object:Gem::Version
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4
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-
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3
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+
version: !ruby/object:Gem::Version
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4
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+
version: 0.3.5
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5
5
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prerelease:
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6
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-
segments:
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7
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-
- 0
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8
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-
- 3
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9
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-
- 4
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10
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-
version: 0.3.4
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11
6
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platform: ruby
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12
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-
authors:
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7
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+
authors:
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13
8
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- Kostas Karasavvas
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14
9
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- Finn Bacall
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15
10
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autorequire:
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16
11
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bindir: bin
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17
12
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cert_chain: []
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18
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-
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19
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-
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20
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-
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21
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-
- !ruby/object:Gem::Dependency
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13
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+
date: 2012-12-03 00:00:00.000000000 Z
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14
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+
dependencies:
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15
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+
- !ruby/object:Gem::Dependency
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22
16
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name: myexperiment-rest
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23
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-
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24
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-
requirement: &id001 !ruby/object:Gem::Requirement
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17
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+
requirement: !ruby/object:Gem::Requirement
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25
18
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none: false
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26
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-
requirements:
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19
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+
requirements:
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27
20
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- - ~>
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28
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-
- !ruby/object:Gem::Version
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29
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-
hash: 19
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30
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-
segments:
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31
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-
- 0
|
32
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-
- 3
|
33
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-
- 0
|
21
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+
- !ruby/object:Gem::Version
|
34
22
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version: 0.3.0
|
35
23
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type: :runtime
|
36
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-
version_requirements: *id001
|
37
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-
- !ruby/object:Gem::Dependency
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38
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-
name: taverna-t2flow
|
39
24
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prerelease: false
|
40
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-
|
25
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+
version_requirements: !ruby/object:Gem::Requirement
|
41
26
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none: false
|
42
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-
requirements:
|
27
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+
requirements:
|
43
28
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- - ~>
|
44
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-
- !ruby/object:Gem::Version
|
45
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-
hash: 19
|
46
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-
segments:
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47
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-
- 0
|
48
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-
- 3
|
49
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-
- 0
|
29
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+
- !ruby/object:Gem::Version
|
50
30
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version: 0.3.0
|
31
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+
- !ruby/object:Gem::Dependency
|
32
|
+
name: taverna-t2flow
|
33
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+
requirement: !ruby/object:Gem::Requirement
|
34
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+
none: false
|
35
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+
requirements:
|
36
|
+
- - ~>
|
37
|
+
- !ruby/object:Gem::Version
|
38
|
+
version: 0.4.0
|
51
39
|
type: :runtime
|
52
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-
version_requirements: *id002
|
53
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-
- !ruby/object:Gem::Dependency
|
54
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-
name: t2-server
|
55
40
|
prerelease: false
|
56
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-
|
41
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+
version_requirements: !ruby/object:Gem::Requirement
|
57
42
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none: false
|
58
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-
requirements:
|
43
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+
requirements:
|
59
44
|
- - ~>
|
60
|
-
- !ruby/object:Gem::Version
|
61
|
-
|
62
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-
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63
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-
|
64
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-
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65
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-
|
45
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+
- !ruby/object:Gem::Version
|
46
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+
version: 0.4.0
|
47
|
+
- !ruby/object:Gem::Dependency
|
48
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+
name: t2-server
|
49
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+
requirement: !ruby/object:Gem::Requirement
|
50
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+
none: false
|
51
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+
requirements:
|
52
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+
- - ~>
|
53
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+
- !ruby/object:Gem::Version
|
66
54
|
version: 0.6.1
|
67
55
|
type: :runtime
|
68
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-
version_requirements: *id003
|
69
|
-
- !ruby/object:Gem::Dependency
|
70
|
-
name: rubyzip
|
71
56
|
prerelease: false
|
72
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-
|
57
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+
version_requirements: !ruby/object:Gem::Requirement
|
73
58
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none: false
|
74
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-
requirements:
|
59
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+
requirements:
|
75
60
|
- - ~>
|
76
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-
- !ruby/object:Gem::Version
|
77
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-
|
78
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-
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79
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-
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80
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-
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81
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-
|
61
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+
- !ruby/object:Gem::Version
|
62
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+
version: 0.6.1
|
63
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+
- !ruby/object:Gem::Dependency
|
64
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+
name: rubyzip
|
65
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+
requirement: !ruby/object:Gem::Requirement
|
66
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+
none: false
|
67
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+
requirements:
|
68
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+
- - ~>
|
69
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+
- !ruby/object:Gem::Version
|
82
70
|
version: 0.9.4
|
83
71
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type: :runtime
|
84
|
-
|
85
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-
|
86
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-
|
72
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+
prerelease: false
|
73
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+
version_requirements: !ruby/object:Gem::Requirement
|
74
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+
none: false
|
75
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+
requirements:
|
76
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+
- - ~>
|
77
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+
- !ruby/object:Gem::Version
|
78
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+
version: 0.9.4
|
79
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+
description: This script acquires information for a taverna 2 workflow from myExperiment
|
80
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+
(or from a file) and generates a Galaxy tool (.xml and .rb files).
|
81
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+
email:
|
87
82
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- finn.bacall@cs.man.ac.uk
|
88
83
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- R.M.van_Schouwen@lumc.nl
|
89
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-
executables:
|
84
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+
executables:
|
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85
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- workflow_to_galaxy.rb
|
91
86
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extensions: []
|
92
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-
|
93
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-
extra_rdoc_files:
|
87
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+
extra_rdoc_files:
|
94
88
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- README
|
95
89
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- LICENSE
|
96
90
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- CHANGES
|
97
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-
files:
|
91
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files:
|
98
92
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- LICENSE
|
99
93
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- README
|
100
94
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- CHANGES
|
101
95
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- Rakefile
|
102
96
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- bin/workflow_to_galaxy.rb
|
103
97
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- lib/workflow-to-galaxy.rb
|
104
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-
- lib/workflow-to-galaxy/galaxy.rb
|
105
98
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- lib/workflow-to-galaxy/constants.rb
|
99
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+
- lib/workflow-to-galaxy/galaxy.rb
|
100
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+
- doc/rdoc/WorkflowToGalaxy.html
|
101
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+
- doc/rdoc/created.rid
|
102
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+
- doc/rdoc/table_of_contents.html
|
103
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+
- doc/rdoc/LICENSE.html
|
104
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+
- doc/rdoc/CHANGES.html
|
105
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+
- doc/rdoc/index.html
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106
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- doc/rdoc/rdoc.css
|
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-
- doc/rdoc/
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- doc/rdoc/
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-
- doc/rdoc/
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-
- doc/rdoc/
|
107
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- doc/rdoc/js/searcher.js
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108
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- doc/rdoc/js/search.js
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109
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+
- doc/rdoc/js/jquery.js
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110
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+
- doc/rdoc/js/search_index.js
|
111
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+
- doc/rdoc/js/navigation.js
|
112
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+
- doc/rdoc/js/darkfish.js
|
113
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+
- doc/rdoc/String.html
|
114
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+
- doc/rdoc/README.html
|
115
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+
- doc/rdoc/images/wrench.png
|
116
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- doc/rdoc/images/zoom.png
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- doc/rdoc/images/plugin.png
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-
- doc/rdoc/images/
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- doc/rdoc/images/date.png
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119
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- doc/rdoc/images/tag_green.png
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- doc/rdoc/images/macFFBgHack.png
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- doc/rdoc/images/wrench.png
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- doc/rdoc/images/add.png
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- doc/rdoc/images/page_green.png
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- doc/rdoc/images/brick_link.png
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- doc/rdoc/images/bullet_toggle_plus.png
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120
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- doc/rdoc/images/delete.png
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121
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- doc/rdoc/images/package.png
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-
- doc/rdoc/images/
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- doc/rdoc/images/
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- doc/rdoc/images/page_green.png
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- doc/rdoc/images/brick_link.png
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- doc/rdoc/images/brick.png
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- doc/rdoc/images/zoom.png
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- doc/rdoc/images/date.png
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127
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-
- doc/rdoc/images/bug.png
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125
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- doc/rdoc/images/ruby.png
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126
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+
- doc/rdoc/images/bug.png
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- doc/rdoc/images/wrench_orange.png
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- doc/rdoc/images/bullet_toggle_plus.png
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- doc/rdoc/images/add.png
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- doc/rdoc/images/page_white_text.png
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- doc/rdoc/images/tag_blue.png
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132
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- doc/rdoc/images/loadingAnimation.gif
|
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- doc/rdoc/images/bullet_black.png
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- doc/rdoc/images/macFFBgHack.png
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135
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- doc/rdoc/images/page_white_width.png
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- doc/rdoc/
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- doc/rdoc/
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- doc/rdoc/
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- doc/rdoc/created.rid
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- doc/rdoc/js/search_index.js
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136
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- doc/rdoc/js/search.js
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- doc/rdoc/js/jquery.js
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-
- doc/rdoc/js/navigation.js
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139
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- doc/rdoc/js/darkfish.js
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140
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- doc/rdoc/js/searcher.js
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- doc/rdoc/index.html
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136
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+
- doc/rdoc/images/find.png
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137
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+
- doc/rdoc/images/bullet_toggle_minus.png
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- doc/rdoc/images/transparent.png
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139
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- doc/rdoc/WorkflowToGalaxy/Workflows.html
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140
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- doc/rdoc/WorkflowToGalaxy/GalaxyTool.html
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- doc/rdoc/CHANGES.html
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- doc/rdoc/LICENSE.html
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- doc/rdoc/README.html
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141
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homepage:
|
148
142
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licenses: []
|
149
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-
|
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143
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post_install_message:
|
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144
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rdoc_options: []
|
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-
|
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require_paths:
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require_paths:
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146
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
|
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requirements:
|
158
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-
- -
|
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-
- !ruby/object:Gem::Version
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160
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-
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161
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-
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162
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- 0
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163
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version: "0"
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164
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-
required_rubygems_version: !ruby/object:Gem::Requirement
|
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requirements:
|
150
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+
- - ! '>='
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151
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+
- !ruby/object:Gem::Version
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version: '0'
|
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
|
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requirements:
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-
- -
|
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- !ruby/object:Gem::Version
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-
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segments:
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- 0
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version: "0"
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requirements:
|
156
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- - ! '>='
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157
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- !ruby/object:Gem::Version
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version: '0'
|
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159
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requirements: []
|
174
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-
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rubyforge_project:
|
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-
rubygems_version: 1.8.
|
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+
rubygems_version: 1.8.24
|
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signing_key:
|
178
163
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specification_version: 3
|
179
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-
summary: This script acquires information for a taverna 2 workflow from myExperiment
|
164
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+
summary: This script acquires information for a taverna 2 workflow from myExperiment
|
165
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+
(or from a file) and generates a Galaxy tool (.xml and .rb files).
|
180
166
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test_files: []
|
181
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-
|