workflow-to-galaxy 0.3.4 → 0.3.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/Rakefile +2 -2
- data/doc/rdoc/CHANGES.html +92 -89
- data/doc/rdoc/LICENSE.html +91 -89
- data/doc/rdoc/README.html +110 -107
- data/doc/rdoc/String.html +163 -148
- data/doc/rdoc/WorkflowToGalaxy.html +149 -121
- data/doc/rdoc/WorkflowToGalaxy/GalaxyTool.html +227 -201
- data/doc/rdoc/WorkflowToGalaxy/Workflows.html +127 -115
- data/doc/rdoc/created.rid +7 -7
- data/doc/rdoc/index.html +87 -104
- data/doc/rdoc/js/darkfish.js +62 -99
- data/doc/rdoc/js/jquery.js +29 -15
- data/doc/rdoc/rdoc.css +339 -119
- metadata +101 -116
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<title>File: README [workflow-to-galaxy Docs]</title>
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title="show/hide quicksearch" /></span></h3>
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<li><a href="./WorkflowToGalaxy.html">WorkflowToGalaxy</a></li>
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<li><a href="./WorkflowToGalaxy/GalaxyTool.html">WorkflowToGalaxy::GalaxyTool</a></li>
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<li><a href="./WorkflowToGalaxy/Workflows.html">WorkflowToGalaxy::Workflows</a></li>
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<li><a href="./String.html">String</a></li>
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<h1>workflow-to-galaxy tool generator</h1>
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<table class="rdoc-list"><tr><td class="rdoc-term"><p>Authors</p></td>
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<p>Konstantinos Karasavvas, Finn Bacall</p>
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</td></tr><tr><td class="rdoc-term"><p>Gem Version</p></td>
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<p>0.3.4</p>
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<p><a href="mailto:r.m.van_schouwen@lumc.nl">r.m.van_schouwen@lumc.nl</a>, <a
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href="mailto:finn.bacall@cs.man.ac.uk">finn.bacall@cs.man.ac.uk</a></p>
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<td>
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<p>MIT (See LICENCE or <a
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href="http://www.opensource.org/licenses/mit-license">www.opensource.org/licenses/mit-license</a>)</p>
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<p>© 2010 Netherlands Bioinformatics Centre, The Netherlands</p>
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<h2>Synopsis</h2>
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<p>This script requires a Taverna2 workflow URL as input and generates a
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Galaxy tool (a UI XML definition plus a script) that will enable the
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future.</p>
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<pre>[sudo] gem install workflow-to-galaxy</pre>
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<p>Let’s say we want to install the taverna2 workflow <a
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<pre>$ workflow_to_galaxy -s http://localhost:8980/taverna-server http://www.myexperiment.org/workflows/74/download/bioaid_proteindiscovery_781733.t2flow?version=5</pre>
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<table class="rdoc-list"><tr><td class="rdoc-term"><p>Taverna-Galaxy</p></td>
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