viral_seq 1.5.0 → 1.6.3
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- checksums.yaml +4 -4
- data/Gemfile.lock +3 -3
- data/README.md +17 -1
- data/bin/tcs +13 -4
- data/bin/tcs_log +614 -0
- data/bin/tcs_sdrm +2 -1
- data/docs/variants_structure.pdf +0 -0
- data/lib/viral_seq/constant.rb +3 -1
- data/lib/viral_seq/muscle.rb +8 -2
- data/lib/viral_seq/seq_hash.rb +8 -3
- data/lib/viral_seq/sequence.rb +12 -13
- data/lib/viral_seq/tcs_core.rb +10 -2
- data/lib/viral_seq/tcs_dr.rb +2 -2
- data/lib/viral_seq/version.rb +2 -2
- data/viral_seq.gemspec +1 -1
- metadata +5 -4
data/viral_seq.gemspec
CHANGED
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@@ -35,7 +35,7 @@ Gem::Specification.new do |spec|
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35
35
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spec.required_rubygems_version = '>= 1.3.6'
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36
36
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37
37
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# muscle_bio gem required
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38
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-
spec.add_runtime_dependency "muscle_bio", "~> 0.
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38
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+
spec.add_runtime_dependency "muscle_bio", "~> 0.5"
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39
39
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40
40
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# colorize gem required
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41
41
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spec.add_runtime_dependency "colorize", "~> 0.1"
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: viral_seq
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 1.
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4
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+
version: 1.6.3
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Shuntai Zhou
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@@ -9,7 +9,7 @@ authors:
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9
9
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autorequire:
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10
10
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bindir: bin
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11
11
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cert_chain: []
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12
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-
date: 2022-
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12
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+
date: 2022-02-05 00:00:00.000000000 Z
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13
13
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dependencies:
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14
14
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- !ruby/object:Gem::Dependency
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15
15
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name: bundler
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@@ -59,14 +59,14 @@ dependencies:
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59
59
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requirements:
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60
60
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- - "~>"
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61
61
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- !ruby/object:Gem::Version
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|
62
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-
version: '0.
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62
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+
version: '0.5'
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63
63
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type: :runtime
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64
64
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prerelease: false
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65
65
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version_requirements: !ruby/object:Gem::Requirement
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66
66
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requirements:
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67
67
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- - "~>"
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68
68
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- !ruby/object:Gem::Version
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69
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-
version: '0.
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69
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+
version: '0.5'
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70
70
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- !ruby/object:Gem::Dependency
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71
71
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name: colorize
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72
72
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requirement: !ruby/object:Gem::Requirement
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@@ -172,6 +172,7 @@ files:
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172
172
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- docs/dr.json
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173
173
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- docs/sample_miseq_data/hivdr_control/r1.fastq.gz
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174
174
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- docs/sample_miseq_data/hivdr_control/r2.fastq.gz
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175
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+
- docs/variants_structure.pdf
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175
176
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- lib/viral_seq.rb
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176
177
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- lib/viral_seq/constant.rb
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177
178
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- lib/viral_seq/enumerable.rb
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