unipept 0.5.1 → 0.5.2

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Files changed (4) hide show
  1. checksums.yaml +4 -4
  2. data/VERSION +1 -1
  3. data/bin/uniprot +12 -6
  4. metadata +1 -1
checksums.yaml CHANGED
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+ data.tar.gz: 135dce274a849f9dff3ffd94cf7a04d25a7f32c0066ec80a7e1c38e1486bd2041b40d9de1a7e811a868e97e07444bc1c21a4dcd35c52c7267246b536fe92bfb3
data/VERSION CHANGED
@@ -1 +1 @@
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- 0.5.1
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+ 0.5.2
data/bin/uniprot CHANGED
@@ -1,23 +1,29 @@
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  #!/usr/bin/env ruby
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- require 'faraday'
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+ require 'typhoeus'
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  require 'cri'
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  Signal.trap("PIPE", "EXIT")
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  Signal.trap("INT", "EXIT")
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- def get_uniprot_entry(arg)
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- resp = Faraday.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
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+ def get_uniprot_entry(arg, fasta = false)
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+ resp = Typhoeus.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
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  if resp.success?
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- puts resp.body.lines.map(&:chomp)[1..-1].join("")
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+ if fasta
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+ puts resp.response_body
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+ else
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+ puts resp.response_body.lines.map(&:chomp)[1..-1].join("")
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+ end
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  end
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  end
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+ fasta = ARGV.delete "--fasta"
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+
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  if ARGV.empty?
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  STDIN.each_line do |pept|
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- get_uniprot_entry(pept.chomp)
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+ get_uniprot_entry(pept.chomp, fasta)
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  end
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  else
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  ARGV.each do |pept|
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- get_uniprot_entry(pept)
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+ get_uniprot_entry(pept, fasta)
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  end
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: unipept
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  version: !ruby/object:Gem::Version
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- version: 0.5.1
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+ version: 0.5.2
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  platform: ruby
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  authors:
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  - Toon Willems