unipept 0.5.1 → 0.5.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/uniprot +12 -6
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 7e2b134dc5a0b633c5d3aba0b1e21e290dc821c3
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4
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+
data.tar.gz: 63972b5c62b6272f9fe27ef0145739e0a152d535
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 5e66de364e9a572a17e9ae32c1cc3a3c18aa002f22d9a22525f6c610619e814cf277cc7c9a25c599ae401cf586e0b996aec9ed52e435648bd807eee073b91a2c
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7
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data.tar.gz: 135dce274a849f9dff3ffd94cf7a04d25a7f32c0066ec80a7e1c38e1486bd2041b40d9de1a7e811a868e97e07444bc1c21a4dcd35c52c7267246b536fe92bfb3
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.5.
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1
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+
0.5.2
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data/bin/uniprot
CHANGED
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@@ -1,23 +1,29 @@
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1
1
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#!/usr/bin/env ruby
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2
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-
require '
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2
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+
require 'typhoeus'
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3
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require 'cri'
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4
4
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5
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Signal.trap("PIPE", "EXIT")
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Signal.trap("INT", "EXIT")
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7
7
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8
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-
def get_uniprot_entry(arg)
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9
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-
resp =
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8
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+
def get_uniprot_entry(arg, fasta = false)
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9
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resp = Typhoeus.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
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10
10
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if resp.success?
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11
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-
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11
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if fasta
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12
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puts resp.response_body
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13
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else
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14
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puts resp.response_body.lines.map(&:chomp)[1..-1].join("")
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15
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end
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12
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end
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13
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end
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14
18
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19
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+
fasta = ARGV.delete "--fasta"
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20
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+
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15
21
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if ARGV.empty?
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16
22
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STDIN.each_line do |pept|
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17
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-
get_uniprot_entry(pept.chomp)
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23
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+
get_uniprot_entry(pept.chomp, fasta)
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18
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end
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else
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ARGV.each do |pept|
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21
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-
get_uniprot_entry(pept)
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27
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+
get_uniprot_entry(pept, fasta)
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22
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end
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23
29
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end
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