unipept 0.5.1 → 0.5.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 74ba05b1628709073778658a77cb82cf28e65b86
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data/VERSION

@@ -1 +1 @@
-0.5.1
+0.5.2

data/bin/uniprot

@@ -1,23 +1,29 @@
 #!/usr/bin/env ruby
-require 'faraday'
+require 'typhoeus'
 require 'cri'
 
 Signal.trap("PIPE", "EXIT")
 Signal.trap("INT", "EXIT")
 
-def get_uniprot_entry(arg)
-  resp = Faraday.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
+def get_uniprot_entry(arg, fasta = false)
+  resp = Typhoeus.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
   if resp.success?
-    puts resp.body.lines.map(&:chomp)[1..-1].join("")
+    if fasta
+      puts resp.response_body
+    else
+      puts resp.response_body.lines.map(&:chomp)[1..-1].join("")
+    end
   end
 end
 
+fasta = ARGV.delete "--fasta"
+
 if ARGV.empty?
   STDIN.each_line do |pept|
-    get_uniprot_entry(pept.chomp)
+    get_uniprot_entry(pept.chomp, fasta)
   end
 else
   ARGV.each do |pept|
-    get_uniprot_entry(pept)
+    get_uniprot_entry(pept, fasta)
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: unipept
 version: !ruby/object:Gem::Version
-  version: 0.5.1
+  version: 0.5.2
 platform: ruby
 authors:
 - Toon Willems