unipept 0.5.1 → 0.5.2
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/uniprot +12 -6
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA1:
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|
3
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-
metadata.gz:
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|
4
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-
data.tar.gz:
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|
3
|
+
metadata.gz: 7e2b134dc5a0b633c5d3aba0b1e21e290dc821c3
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|
4
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+
data.tar.gz: 63972b5c62b6272f9fe27ef0145739e0a152d535
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5
5
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SHA512:
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|
6
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-
metadata.gz:
|
|
7
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-
data.tar.gz:
|
|
6
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+
metadata.gz: 5e66de364e9a572a17e9ae32c1cc3a3c18aa002f22d9a22525f6c610619e814cf277cc7c9a25c599ae401cf586e0b996aec9ed52e435648bd807eee073b91a2c
|
|
7
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+
data.tar.gz: 135dce274a849f9dff3ffd94cf7a04d25a7f32c0066ec80a7e1c38e1486bd2041b40d9de1a7e811a868e97e07444bc1c21a4dcd35c52c7267246b536fe92bfb3
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data/VERSION
CHANGED
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@@ -1 +1 @@
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|
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1
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-
0.5.
|
|
1
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+
0.5.2
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data/bin/uniprot
CHANGED
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@@ -1,23 +1,29 @@
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|
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1
1
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#!/usr/bin/env ruby
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|
2
|
-
require '
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|
2
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+
require 'typhoeus'
|
|
3
3
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require 'cri'
|
|
4
4
|
|
|
5
5
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Signal.trap("PIPE", "EXIT")
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|
6
6
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Signal.trap("INT", "EXIT")
|
|
7
7
|
|
|
8
|
-
def get_uniprot_entry(arg)
|
|
9
|
-
resp =
|
|
8
|
+
def get_uniprot_entry(arg, fasta = false)
|
|
9
|
+
resp = Typhoeus.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
|
|
10
10
|
if resp.success?
|
|
11
|
-
|
|
11
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+
if fasta
|
|
12
|
+
puts resp.response_body
|
|
13
|
+
else
|
|
14
|
+
puts resp.response_body.lines.map(&:chomp)[1..-1].join("")
|
|
15
|
+
end
|
|
12
16
|
end
|
|
13
17
|
end
|
|
14
18
|
|
|
19
|
+
fasta = ARGV.delete "--fasta"
|
|
20
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+
|
|
15
21
|
if ARGV.empty?
|
|
16
22
|
STDIN.each_line do |pept|
|
|
17
|
-
get_uniprot_entry(pept.chomp)
|
|
23
|
+
get_uniprot_entry(pept.chomp, fasta)
|
|
18
24
|
end
|
|
19
25
|
else
|
|
20
26
|
ARGV.each do |pept|
|
|
21
|
-
get_uniprot_entry(pept)
|
|
27
|
+
get_uniprot_entry(pept, fasta)
|
|
22
28
|
end
|
|
23
29
|
end
|