uds_plus_test_kit 0.9.1 → 1.0.1

data/lib/uds_plus_test_kit/validate_special_observation_test.rb

@@ -0,0 +1,65 @@
+require 'json'
+require_relative './version'
+
+module UDSPlusTestKit
+    class ValidateSpecialObservationTest < Inferno::Test
+        id :uds_plus_validate_special_observation_test
+        title 'Validate UDS+ Special Observation Data'
+        description %(
+            Test takes the Special Observation resources identified 
+            (such as uds-special-population-observation) by the import 
+            manifest, and validates whether they conform to their 
+            UDS+ Structure Definitions.
+        )
+
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Observation'] ||= []
+        end
+
+        run do
+            omit_if data_to_test.empty?, "No data of this type was identified."
+
+            no_resource_of_this_type = true
+            identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the 
+                                        resource's Structure Definition. Resource.meta.profile either does 
+                                        not exist in this resource, or its contents do not point to a valid
+                                        location for type Observation. **NOTE:**
+                                        If this error occurs, it can trigger a fail for all observation-type tests, 
+                                        regardless of whether both tests were meant to run.)
+
+            data_to_test.each do |resource|
+                # All these assertions are to differentaite Observation data between orientation types.
+                # A resource is skipped if it is one of the observation types with their own tests.
+                type_identifier = resource.to_hash
+                assert type_identifier['meta'].present?, identifier_fail_message
+
+                type_identifier = type_identifier['meta']
+                assert type_identifier.is_a?(Hash), identifier_fail_message
+                assert type_identifier['profile'].present?, identifier_fail_message
+
+                type_identifier = type_identifier['profile']
+                assert type_identifier.is_a?(Array), identifier_fail_message
+                assert !type_identifier.empty?, identifier_fail_message
+
+
+                type_identifier = type_identifier.first
+                assert type_identifier.is_a?(String), identifier_fail_message
+                if type_identifier.include?("income") || type_identifier.include?("sexual-orientation") || type_identifier.include?("-lab-")
+                    next
+                else
+                    assert type_identifier.downcase.include?("observation"), identifier_fail_message
+                end
+                    
+                no_resource_of_this_type = false
+
+                assert_valid_resource(resource: resource)
+            end
+
+            omit_if no_resource_of_this_type, "No data of this type was identified."
+        end
+    end
+end

data/lib/uds_plus_test_kit/version.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
 module UDSPlusTestKit
-    VERSION = '0.9.1'
-    UDS_PLUS_VERSION = '0.3.0'
+    VERSION = '1.0.1'
+    UDS_PLUS_VERSION = '0.4.1' #'1.0.0'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: uds_plus_test_kit
 version: !ruby/object:Gem::Version
-  version: 0.9.1
+  version: 1.0.1
 platform: ruby
 authors:
 - Leap Orbit
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-05-03 00:00:00.000000000 Z
+date: 2023-07-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: inferno_core
@@ -89,31 +89,53 @@ extra_rdoc_files: []
 files:
 - LICENSE
 - lib/uds_plus_test_kit.rb
+- lib/uds_plus_test_kit/examples/condition.ndjson
+- lib/uds_plus_test_kit/examples/encounter.ndjson
+- lib/uds_plus_test_kit/examples/invalid_condition.ndjson
+- lib/uds_plus_test_kit/examples/invalid_encounter.ndjson
+- lib/uds_plus_test_kit/examples/invalid_patient.ndjson
 - lib/uds_plus_test_kit/examples/manifest.json
-- lib/uds_plus_test_kit/examples/manifest_2.json
-- lib/uds_plus_test_kit/examples/manifest_not_deidentified.json
+- lib/uds_plus_test_kit/examples/observation.ndjson
+- lib/uds_plus_test_kit/examples/patient.ndjson
 - lib/uds_plus_test_kit/input_resource_tests/read_coverage_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_diagnosis_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_encounter_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_immunization_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_income_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_lab_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_manifest_ind_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_med_request_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_med_statement_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_patient_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_procedure_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_related_person_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_service_request_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/read_sexual_orientation_test.rb
+- lib/uds_plus_test_kit/input_resource_tests/read_special_observation_test.rb
 - lib/uds_plus_test_kit/input_resource_tests/resource_group.rb
 - lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb
 - lib/uds_plus_test_kit/manifest_tests/read_data_test.rb
 - lib/uds_plus_test_kit/manifest_tests/read_manifest_test.rb
 - lib/uds_plus_test_kit/manifest_tests/uds_plus_test_group.rb
 - lib/uds_plus_test_kit/manifest_tests/validate_manifest_test.rb
+- lib/uds_plus_test_kit/post_tests/post_group.rb
+- lib/uds_plus_test_kit/post_tests/post_manifest_test.rb
+- lib/uds_plus_test_kit/post_tests/read_post_test.rb
 - lib/uds_plus_test_kit/uds_plus_test_suite.rb
 - lib/uds_plus_test_kit/validate_coverage_test.rb
 - lib/uds_plus_test_kit/validate_diagnosis_test.rb
 - lib/uds_plus_test_kit/validate_encounter_test.rb
+- lib/uds_plus_test_kit/validate_immunization_test.rb
 - lib/uds_plus_test_kit/validate_income_test.rb
+- lib/uds_plus_test_kit/validate_lab_test.rb
+- lib/uds_plus_test_kit/validate_med_request_test.rb
+- lib/uds_plus_test_kit/validate_med_statement_test.rb
 - lib/uds_plus_test_kit/validate_patient_test.rb
 - lib/uds_plus_test_kit/validate_procedure_test.rb
+- lib/uds_plus_test_kit/validate_related_person_test.rb
+- lib/uds_plus_test_kit/validate_service_request_test.rb
 - lib/uds_plus_test_kit/validate_sexual_orientation_test.rb
+- lib/uds_plus_test_kit/validate_special_observation_test.rb
 - lib/uds_plus_test_kit/version.rb
 homepage: https://github.com/inferno-framework/uds-plus-test-kit
 licenses:

data/lib/uds_plus_test_kit/examples/manifest_2.json

@@ -1,101 +0,0 @@
-{
-    "resourceType": "Parameters",
-    "id": "example",
-    "meta": {
-      "extension": [
-        {
-          "url": "http://hl7.org/fhir/StructureDefinition/instance-name",
-          "valueString": "UDS+ Manifest File Example"
-        },
-        {
-          "url": "http://hl7.org/fhir/StructureDefinition/instance-description",
-          "valueMarkdown": "This is an example of a Manifest file submitted as a parameter to the UDS+ $import operation."
-        }
-      ],
-      "profile": [
-        "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-import-manifest"
-      ]
-    },
-    "parameter": [
-      {
-        "name": "inputFormat",
-        "valueCode": "application/ndjson"
-      },
-      {
-        "name": "inputSource",
-        "valueUrl": "http://localhost:4567/"
-      },
-      {
-        "name": "storageDetail",
-        "valueCode": "https"
-      },
-      {
-        "name": "udsData",
-        "part": [
-          {
-            "name": "type",
-            "valueCode": "Patient"
-          },
-          {
-            "name": "url",
-            "valueUrl": "http://localhost:4567/custom/uds_plus/examples/patient"
-          },
-          {
-            "name": "expirationTime",
-            "valueDateTime": "2022-12-14T07:15:07-08:00"
-          }
-        ]
-      },
-      {
-        "name": "udsData",
-        "part": [
-          {
-            "name": "type",
-            "valueCode": "Condition"
-          },
-          {
-            "name": "url",
-            "valueUrl": "http://localhost:4567/custom/uds_plus/examples/condition"
-          },
-          {
-            "name": "expirationTime",
-            "valueDateTime": "2022-12-14T07:15:07-08:00"
-          }
-        ]
-      },
-      {
-        "name": "udsData",
-        "part": [
-          {
-            "name": "type",
-            "valueCode": "Encounter"
-          },
-          {
-            "name": "url",
-            "valueUrl": "http://localhost:4567/custom/uds_plus/examples/encounter"
-          },
-          {
-            "name": "expirationTime",
-            "valueDateTime": "2022-12-14T07:15:07-08:00"
-          }
-        ]
-      },
-      {
-        "name": "udsData",
-        "part": [
-          {
-            "name": "type",
-            "valueCode": "Condition"
-          },
-          {
-            "name": "url",
-            "valueUrl": "http://localhost:4567/custom/uds_plus/examples/condition"
-          },
-          {
-            "name": "expirationTime",
-            "valueDateTime": "2022-12-14T07:15:07-08:00"
-          }
-        ]
-      }
-    ]
-  }

data/lib/uds_plus_test_kit/examples/manifest_not_deidentified.json

@@ -1,67 +0,0 @@
-{
-    "resourceType": "Parameters",
-    "id": "example",
-    "meta": {
-      "extension": [
-        {
-          "url": "http://hl7.org/fhir/StructureDefinition/instance-name",
-          "valueString": "UDS+ Manifest File Example"
-        },
-        {
-          "url": "http://hl7.org/fhir/StructureDefinition/instance-description",
-          "valueMarkdown": "This is an example of a Manifest file submitted as a parameter to the UDS+ $import operation."
-        }
-      ],
-      "profile": [
-        "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-import-manifest"
-      ]
-    },
-    "parameter": [
-      {
-        "name": "inputFormat",
-        "valueCode": "application/ndjson"
-      },
-      {
-        "name": "inputSource",
-        "valueUrl": "http://localhost:4567/"
-      },
-      {
-        "name": "storageDetail",
-        "valueCode": "https"
-      },
-      {
-        "name": "udsData",
-        "part": [
-          {
-            "name": "type",
-            "valueCode": "Patient"
-          },
-          {
-            "name": "url",
-            "valueUrl": "http://localhost:4567/custom/uds_plus/examples/invalid_patient"
-          },
-          {
-            "name": "expirationTime",
-            "valueDateTime": "2022-12-14T07:15:07-08:00"
-          }
-        ]
-      },
-      {
-        "name": "udsData",
-        "part": [
-          {
-            "name": "type",
-            "valueCode": "Condition"
-          },
-          {
-            "name": "url",
-            "valueUrl": "http://localhost:4567/custom/uds_plus/examples/invalid_condition"
-          },
-          {
-            "name": "expirationTime",
-            "valueDateTime": "2022-12-14T07:15:07-08:00"
-          }
-        ]
-      }
-    ]
-}