uds_plus_test_kit 0.9.1 → 1.0.1

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/uds_plus_test_kit/examples/condition.ndjson

@@ -0,0 +1 @@
+{  "resourceType": "Condition",  "id": "de-identified-example",  "meta": {    "extension": [      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-name",        "valueString": "De-identified Diagnosis Example"      },      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-description",        "valueMarkdown": "This example of a UDS+ Diagnosis profile which illustrates its use to capture de-identified information about a patient's diagnosis."      }    ],    "profile": [      "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-diagnosis"    ]  },  "extension": [    {      "url": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",      "valueDateTime": "2007"    }  ],  "clinicalStatus": {    "coding": [      {        "system": "http://terminology.hl7.org/CodeSystem/condition-clinical",        "code": "active",        "display": "Active"      }    ]  },  "verificationStatus": {    "coding": [      {        "system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",        "code": "confirmed",        "display": "Confirmed"      }    ]  },  "category": [    {      "coding": [        {          "system": "http://terminology.hl7.org/CodeSystem/condition-category",          "code": "problem-list-item",          "display": "Problem List Item"        }      ]    }  ],  "code": {    "coding": [      {        "system": "http://hl7.org/fhir/sid/icd-10-cm",        "code": "B18.2",        "display": "Chronic viral hepatitis C"      }    ]  },  "subject": {    "reference": "Patient/de-identified-example"  },  "onsetDateTime": "2007",  "recordedDate": "2007"}

data/lib/uds_plus_test_kit/examples/encounter.ndjson

@@ -0,0 +1 @@
+{  "resourceType": "Encounter",  "id": "de-identified-example",  "meta": {    "extension": [      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-name",        "valueString": "De-Identified Encounter Example"      },      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-description",        "valueMarkdown": "This is an encounter example for the *US Core Encounter Profile*."      }    ],    "lastUpdated": "2022-05-26T11:56:57.250-04:00",    "profile": [      "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-encounter"    ]  },  "extension": [    {      "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension",      "valueQuantity": {        "value": 36,        "unit": "yr",        "system": "http://unitsofmeasure.org",        "code": "a"      }    }  ],  "status": "finished",  "class": {    "system": "http://terminology.hl7.org/CodeSystem/v3-ActCode",    "code": "AMB",    "display": "ambulatory"  },  "type": [    {      "coding": [        {          "system": "http://www.ama-assn.org/go/cpt",          "code": "99201"        }      ]    }  ],  "subject": {    "reference": "Patient/de-identified-example"  },  "period": {    "start": "2022",    "end": "2022"  },  "hospitalization": {    "dischargeDisposition": {      "coding": [        {          "system": "http://www.nubc.org/patient-discharge",          "code": "01",          "display": "Discharged to Home"        }      ]    }  },  "location": [    {      "location": {        "reference": "Location/hospital",        "display": "Holy Family Hospital"      }    }  ]}

data/lib/uds_plus_test_kit/examples/invalid_condition.ndjson

@@ -0,0 +1 @@
+ {   "resourceType" : "Condition",   "id" : "example",   "meta" : {     "extension" : [       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-name",         "valueString" : "Diagnosis Example"       },       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-description",         "valueMarkdown" : "This example of a US Core Condition Problems and Health Concerns Profile illustrates its use to capture information about a patient's diagnosis."       }     ],     "profile" : [       "http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition-problems-health-concerns"     ]   },   "text" : {     "status" : "extensions",     "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Condition</b><a name=\"example\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Condition &quot;example&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"http://hl7.org/fhir/us/core/STU6/StructureDefinition-us-core-condition-problems-health-concerns.html\">US Core Condition Problems and Health Concerns Profile</a></p></div><p><b>assertedDate</b>: 2007-12-14</p><p><b>clinicalStatus</b>: Active <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-condition-clinical.html\">Condition Clinical Status Codes</a>#active)</span></p><p><b>verificationStatus</b>: Confirmed <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-condition-ver-status.html\">ConditionVerificationStatus</a>#confirmed)</span></p><p><b>category</b>: Problem List Items <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-condition-category.html\">Condition Category Codes</a>#problem-list-item &quot;Problem List Item&quot;)</span></p><p><b>code</b>: Chronic viral hepatitis C <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-icd10CM.html\">International Classification of Diseases, 10th Revision, Clinical Modification (ICD-10-CM)</a>#B18.2)</span></p><p><b>subject</b>: <a href=\"Patient-example.html\">Patient/example: Amy Shaw</a> &quot; SHAW&quot;</p><p><b>onset</b>: 2007-12-14</p><p><b>recordedDate</b>: 2007-12-14 07:15:07-0800</p><p><b>note</b>: Amy Shaw has Hepatitis</p></div>"   },   "extension" : [     {       "url" : "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",       "valueDateTime" : "2007-12-14"     }   ],   "clinicalStatus" : {     "coding" : [       {         "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical",         "code" : "active",         "display" : "Active"       }     ],     "text" : "Active"   },   "verificationStatus" : {     "coding" : [       {         "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status",         "code" : "confirmed",         "display" : "Confirmed"       }     ],     "text" : "Confirmed"   },   "category" : [     {       "coding" : [         {           "system" : "http://terminology.hl7.org/CodeSystem/condition-category",           "code" : "problem-list-item",           "display" : "Problem List Item"         }       ],       "text" : "Problem List Items"     }   ],   "code" : {     "coding" : [       {         "system" : "http://hl7.org/fhir/sid/icd-10-cm",         "code" : "B18.2",         "display" : "Chronic viral hepatitis C"       }     ],     "text" : "Chronic viral hepatitis C"   },   "subject" : {     "reference" : "Patient/example",     "display" : "Amy Shaw"   },   "onsetDateTime" : "2007-12-14",   "recordedDate" : "2007-12-14T07:15:07-08:00",   "note" : [     {       "text" : "Amy Shaw has Hepatitis"     }   ] }

data/lib/uds_plus_test_kit/examples/invalid_encounter.ndjson

@@ -0,0 +1 @@
+ {   "resourceType" : "Encounter",   "id" : "example",   "meta" : {     "extension" : [       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-name",         "valueString" : "Encounter Example"       },       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-description",         "valueMarkdown" : "This is an encounter example for the *US Core Encounter Profile*."       }     ],     "lastUpdated" : "2017-05-26T11:56:57.250-04:00",     "profile" : [       "http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter"     ]   },   "text" : {     "status" : "extensions",     "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-1\" Updated \"2017-05-26 11:56:57-0400\" </p><p style=\"margin-bottom: 0px\">Profile:US Core Encounter Profile</p></div><p><b>status</b>: finished</p><p><b>class</b>: ambulatory (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code AMB = 'ambulatory', stated as 'ambulatory')</p><p><b>type</b>: Office Visit <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-CPT.html\">Current Procedural Terminology (CPT)</a>#99201)</span></p><p><b>subject</b>: <a href=\"Patient-example.html\">Patient/example</a> \" SHAW\"</p><p><b>period</b>: 2015-11-01 05:00:14-0500 --&gt; 2015-11-01 06:00:14-0500</p></div>"   },   "status" : "finished",   "class" : {     "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode",     "code" : "AMB",     "display" : "ambulatory"   },   "type" : [     {       "coding" : [         {           "system" : "http://www.ama-assn.org/go/cpt",           "code" : "99201"         }       ],       "text" : "Office Visit"     }   ],   "subject" : {     "reference" : "Patient/example",     "display" : "Amy"   },   "period" : {     "start" : "2015-11-01T17:00:14-05:00",     "end" : "2015-11-01T18:00:14-05:00"   },   "hospitalization" : {     "dischargeDisposition" : {       "coding" : [         {           "system" : "http://www.nubc.org/patient-discharge",           "code" : "01",           "display" : "Discharged to Home"         }       ],       "text" : "Amy was dischaged to home"     }   },   "location" : [     {       "location" : {         "reference" : "Location/hospital",         "display" : "Holy Family Hospital"       }     }   ] }

data/lib/uds_plus_test_kit/examples/invalid_patient.ndjson

@@ -0,0 +1,2 @@
+{   "resourceType" : "Patient",   "id" : "smallpop-example",   "meta" : {     "extension" : [       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-name",         "valueString" : "Patient Example"       },       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-description",         "valueMarkdown" : "This is a patient example for the *US Core Patient Profile*."       }     ],     "profile" : [       "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"     ]   },   "text" : {     "status" : "generated",     "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>"   },   "extension" : [     {       "extension" : [         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2106-3",             "display" : "White"           }         },         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "1002-5",             "display" : "American Indian or Alaska Native"           }         },         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2028-9",             "display" : "Asian"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "1586-7",             "display" : "Shoshone"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2036-2",             "display" : "Filipino"           }         },         {           "url" : "text",           "valueString" : "Mixed"         }       ],       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race"     },     {       "extension" : [         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2135-2",             "display" : "Hispanic or Latino"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2184-0",             "display" : "Dominican"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2148-5",             "display" : "Mexican"           }         },         {           "url" : "text",           "valueString" : "Hispanic or Latino"         }       ],       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity"     },     {       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex",       "valueCode" : "F"     },     {       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity",       "valueCodeableConcept" : {         "coding" : [           {             "system" : "http://terminology.hl7.org/CodeSystem/v3-NullFlavor",             "code" : "ASKU",             "display" : "asked but unknown"           }         ],         "text" : "asked but unknown"       }     }   ],   "identifier" : [     {       "use" : "usual",       "type" : {         "coding" : [           {             "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",             "code" : "MR",             "display" : "Medical Record Number"           }         ],         "text" : "Medical Record Number"       },       "system" : "http://hospital.smarthealthit.org",       "value" : "1032702"     }   ],   "active" : true,   "name" : [     {       "use" : "old",       "family" : "Shaw",       "given" : [         "Amy",         "V."       ],       "period" : {         "start" : "2016-12-06",         "end" : "2020-07-22"       }     },     {       "family" : "Baxter",       "given" : [         "Amy",         "V."       ],       "suffix" : [         "PharmD"       ],       "period" : {         "start" : "2020-07-22"       }     }   ],   "telecom" : [     {       "system" : "phone",       "value" : "555-555-5555",       "use" : "home"     },     {       "system" : "email",       "value" : "amy.shaw@example.com"     }   ],   "gender" : "female",   "birthDate" : "1987-02-20",   "address" : [     {       "use" : "old",       "line" : [         "49 Meadow St"       ],       "city" : "Norton",       "state" : "VT",       "postalCode" : "05907",       "country" : "US",       "period" : {         "start" : "2016-12-06",         "end" : "2020-07-22"       }     },     {       "line" : [         "183 Mountain View St"       ],       "city" : "Norton",       "state" : "VT",       "postalCode" : "05907",       "country" : "US",       "period" : {         "start" : "2020-07-22"       }     }   ] }
+{   "resourceType" : "Patient",   "id" : "example",   "meta" : {     "extension" : [       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-name",         "valueString" : "Patient Example"       },       {         "url" : "http://hl7.org/fhir/StructureDefinition/instance-description",         "valueMarkdown" : "This is a patient example for the *US Core Patient Profile*."       }     ],     "profile" : [       "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"     ]   },   "text" : {     "status" : "generated",     "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>"   },   "extension" : [     {       "extension" : [         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2106-3",             "display" : "White"           }         },         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "1002-5",             "display" : "American Indian or Alaska Native"           }         },         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2028-9",             "display" : "Asian"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "1586-7",             "display" : "Shoshone"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2036-2",             "display" : "Filipino"           }         },         {           "url" : "text",           "valueString" : "Mixed"         }       ],       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race"     },     {       "extension" : [         {           "url" : "ombCategory",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2135-2",             "display" : "Hispanic or Latino"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2184-0",             "display" : "Dominican"           }         },         {           "url" : "detailed",           "valueCoding" : {             "system" : "urn:oid:2.16.840.1.113883.6.238",             "code" : "2148-5",             "display" : "Mexican"           }         },         {           "url" : "text",           "valueString" : "Hispanic or Latino"         }       ],       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity"     },     {       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex",       "valueCode" : "F"     },     {       "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity",       "valueCodeableConcept" : {         "coding" : [           {             "system" : "http://terminology.hl7.org/CodeSystem/v3-NullFlavor",             "code" : "ASKU",             "display" : "asked but unknown"           }         ],         "text" : "asked but unknown"       }     }   ],   "identifier" : [     {       "use" : "usual",       "type" : {         "coding" : [           {             "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",             "code" : "MR",             "display" : "Medical Record Number"           }         ],         "text" : "Medical Record Number"       },       "system" : "http://hospital.smarthealthit.org",       "value" : "1032702"     }   ],   "active" : true,   "name" : [     {       "use" : "old",       "family" : "Shaw",       "given" : [         "Amy",         "V."       ],       "period" : {         "start" : "2016-12-06",         "end" : "2020-07-22"       }     },     {       "family" : "Baxter",       "given" : [         "Amy",         "V."       ],       "suffix" : [         "PharmD"       ],       "period" : {         "start" : "2020-07-22"       }     }   ],   "telecom" : [     {       "system" : "phone",       "value" : "555-555-5555",       "use" : "home"     },     {       "system" : "email",       "value" : "amy.shaw@example.com"     }   ],   "gender" : "female",   "birthDate" : "1987-02-20",   "address" : [     {       "use" : "old",       "line" : [         "49 Meadow St"       ],       "city" : "Alstead",       "state" : "NH",       "postalCode" : "03602",       "country" : "US",       "period" : {         "start" : "2016-12-06",         "end" : "2020-07-22"       }     },     {       "line" : [         "183 Mountain View St"       ],       "city" : "Alstead",       "state" : "NH",       "postalCode" : "03602",       "country" : "US",       "period" : {         "start" : "2020-07-22"       }     }   ] }

data/lib/uds_plus_test_kit/examples/manifest.json

@@ -16,20 +16,65 @@
       "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-import-manifest"
     ]
   },
-  "parameter": [
-    {
-      "name": "inputFormat",
-      "valueCode": "application/ndjson"
-    },
-    {
-      "name": "inputSource",
-      "valueUrl": "http://localhost:4567/"
-    },
-    {
-      "name": "storageDetail",
-      "valueCode": "https"
-    },
-    {
+  "parameter" : [
+  	{
+  		"name" : "inputFormat",
+  		"valueCode" : "fhir+ndjson"
+  	},
+  	{
+  		"name" : "submissionId",
+  		"valueString" : "234343-aaa-32432"
+  	},
+  	{
+  		"name" : "hcInformation",
+  		"part" : [
+  			{
+  				"name" : "uei",
+  				"valueString" : "12343434"
+  			},
+  			{
+  				"name" : "grantNumber",
+  				"valueString" : "H80CS34333"
+  			},
+  			{
+  				"name" : "hcName",
+  				"valueString" : "Example FQHC"
+  			},
+  			{
+  				"name" : "hcAddress",
+  				"valueAddress" : {
+  				 	"line": [ 
+  				 		"123 Rocky point place"
+  				 		],
+  				 	"city": "Atlanta",
+  				 	"state": "GA",
+  				 	"postalCode": "23434",
+  				 	"country": "US"
+  				}
+  			},
+  			{
+  				"name" : "hcContactPerson",
+  				"valueHumanName" : {
+  				 	"family": "Taylor",
+  				 	"given": [ 
+  				 		"Elizabeth"
+  				 	]
+  				}
+  			},
+  			{
+  				"name" : "hcContactPhone",
+  				"valueContactPoint" : {
+  				 	"system": "phone",
+  				 	"value": "234-234-5648"
+  				}
+  			}
+  		]
+  	},
+  	{
+  		"name" : "importProtocol",
+  		"valueCode" : "https"
+  	},
+  	{
       "name": "udsData",
       "part": [
         {
@@ -63,6 +108,23 @@
         }
       ]
     },
+    {
+      "name": "udsData",
+      "part": [
+        {
+          "name": "type",
+          "valueCode": "Observation"
+        },
+        {
+          "name": "url",
+          "valueUrl": "http://localhost:4567/custom/uds_plus/examples/observation"
+        },
+        {
+          "name": "expirationTime",
+          "valueDateTime": "2022-12-14T07:15:07-08:00"
+        }
+      ]
+    },
     {
       "name": "udsData",
       "part": [

data/lib/uds_plus_test_kit/examples/observation.ndjson

@@ -0,0 +1,3 @@
+{    "resourceType": "Observation",    "id": "de-identified-example",    "meta": {        "profile": [            "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-lab-observation"        ]    },    "status": "final",    "category": [        {            "coding": [                {                    "system" : "http://terminology.hl7.org/CodeSystem/observation-category",          			"code" : "laboratory",          			"display" : "Laboratory"                }            ]        }    ],    "code": {        "coding": [            {                "system" : "http://loinc.org",		        "code" : "718-7",		        "display" : "Hemoglobin [Mass/volume] in Blood"            }        ]    },    "subject": {        "reference": "Patient/de-identified-example"    },    "encounter": {        "reference": "Encounter/de-identified-example"    },    "effectiveDateTime" : "2005",    "issued": "2005-04-03T15:30:10+01:00",    "performer": [        {            "reference": "Practitioner/example"        }    ],    "valueQuantity" : {    "value" : 17,    "unit" : "g/dL",    "system" : "http://unitsofmeasure.org"  	},    "bodySite": {        "coding": [            {                "system": "http://snomed.info/sct",                "code": "368208006",                "display": "Left upper arm structure"            }        ]    }}
+{    "resourceType": "Observation",    "id": "de-identified-income-example",    "meta": {        "profile": [            "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation"        ]    },    "status": "final",    "code": {        "coding": [            {                "system": "http://loinc.org",                "code": "63058-2"            }        ]    },    "subject": {        "reference": "Patient/de-identified-example"    },    "effectiveDateTime": "2016-03-28",    "valueRange": {    	"low": {    		"value": 101    	},    	"high": {    		"value": 150    	}    }}
+{    "resourceType": "Observation",    "id": "de-identified-sexual-orientation-example",    "meta": {        "profile": [            "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation"        ]    },    "status": "final",    "code": {        "coding": [            {                "system": "http://loinc.org",                "code": "76690-7"            }        ]    },    "subject": {        "reference": "Patient/example"    },    "effectiveDateTime": "2007",    "valueCodeableConcept": {        "coding": [            {                "system": "http://snomed.info/sct",                "code": "20430005",                "display": "Heterosexual state"            }        ]    }}

data/lib/uds_plus_test_kit/examples/patient.ndjson

@@ -0,0 +1,2 @@
+{  "resourceType": "Patient",  "id": "de-identified-example",  "meta": {    "extension": [      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-name",        "valueString": "De-identified Patient Example"      },      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-description",        "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*."      }    ],    "profile": [      "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient"    ]  },  "extension": [    {      "extension": [        {          "url": "ombCategory",          "valueCoding": {            "system": "urn:oid:2.16.840.1.113883.6.238",            "code": "2106-3",            "display": "White"          }        },        {          "url": "text",          "valueString": "White"        }      ],      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race"    },    {      "extension": [        {          "url": "ombCategory",          "valueCoding": {            "system": "urn:oid:2.16.840.1.113883.6.238",            "code": "2135-2",            "display": "Hispanic or Latino"          }        },        {          "url": "text",          "valueString": "Hispanic or Latino"        }      ],      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity"    },    {      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex",      "valueCode": "F"    },    {      "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension",      "valueQuantity": {      	"value" : 36,    	"unit" : "yr",    	"system" : "http://unitsofmeasure.org",    	"code" : "a" 	 }    },    {      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity",      "valueCodeableConcept": {        "coding": [          {            "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor",            "code": "ASKU",            "display": "asked but unknown"          }        ],        "text": "asked but unknown"      }    },    {      "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status",      "valueCode": "migratory"    },    {      "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-housing-status-extension",      "valueCode": "permanent-supportive-housing"    },    {      "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-veteran-status-extension",      "valueBoolean": false    }  ],  "active": true,  "gender": "female",  "address": [    {      "postalCode": "03600"    }  ]}
+{  "resourceType": "Patient",  "id": "de-identified-smallpop-example",  "meta": {    "extension": [      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-name",        "valueString": "De-identified Patient Example"      },      {        "url": "http://hl7.org/fhir/StructureDefinition/instance-description",        "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*."      }    ],    "profile": [      "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient"    ]  },  "extension": [    {      "extension": [        {          "url": "ombCategory",          "valueCoding": {            "system": "urn:oid:2.16.840.1.113883.6.238",            "code": "2106-3",            "display": "White"          }        },        {          "url": "text",          "valueString": "White"        }      ],      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race"    },    {      "extension": [        {          "url": "ombCategory",          "valueCoding": {            "system": "urn:oid:2.16.840.1.113883.6.238",            "code": "2135-2",            "display": "Hispanic or Latino"          }        },        {          "url": "text",          "valueString": "Hispanic or Latino"        }      ],      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity"    },    {      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex",      "valueCode": "F"    },    {      "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension",      "valueQuantity": {      	"value" : 36,    	"unit" : "yr",    	"system" : "http://unitsofmeasure.org",    	"code" : "a" 	 }    },    {      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity",      "valueCodeableConcept": {        "coding": [          {            "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor",            "code": "ASKU",            "display": "asked but unknown"          }        ],        "text": "asked but unknown"      }    }  ],  "active": true,  "gender": "female",  "address": [    {      "postalCode": "00000",      "_postalCode": {      "extension" : [ {      	"url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason",      	"valueCode" : "masked"   	}]      }    }  ]}

data/lib/uds_plus_test_kit/input_resource_tests/read_immunization_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadImmunizationTest < Inferno::Test
+        id :uds_plus_read_immunization_test
+        title 'Receive UDS+ Immunization Data'
+        description %(
+            Test takes from the user either: the http location of immunization data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :immunization_data,
+            title: 'Immunization Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/immunization_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Immunization'] ||= []
+        end
+
+        run do
+            omit_if !immunization_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if immunization_data.strip[0] != '{'
+                assert_valid_http_uri(immunization_data, "Location provided is not a valid http uri.")
+                get immunization_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(immunization_data, "JSON inputted was not in a valid format")
+                data = immunization_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_lab_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadLabTest < Inferno::Test
+        id :uds_plus_read_lab_test
+        title 'Receive UDS+ Lab Observation Data'
+        description %(
+            Test takes from the user either: the http location of lab observation data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :lab_data,
+            title: 'Lab Observation Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/lab_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Observation'] ||= []
+        end
+
+        run do
+            omit_if !lab_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if lab_data.strip[0] != '{'
+                assert_valid_http_uri(lab_data, "Location provided is not a valid http uri.")
+                get lab_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(lab_data, "JSON inputted was not in a valid format")
+                data = lab_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_med_request_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadMedicationRequestTest < Inferno::Test
+        id :uds_plus_read_medication_request_test
+        title 'Receive UDS+ Medication Request Data'
+        description %(
+            Test takes from the user either: the http location of medication request data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :medication_request_data,
+            title: 'Medication Request Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/medication_request_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['MedicationRequest'] ||= []
+        end
+
+        run do
+            omit_if !medication_request_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if medication_request_data.strip[0] != '{'
+                assert_valid_http_uri(medication_request_data, "Location provided is not a valid http uri.")
+                get medication_request_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(medication_request_data, "JSON inputted was not in a valid format")
+                data = medication_request_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_med_statement_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadMedicationStatementTest < Inferno::Test
+        id :uds_plus_read_medication_statement_test
+        title 'Receive UDS+ Medication Statement Data'
+        description %(
+            Test takes from the user either: the http location of medication statement data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :medication_statement_data,
+            title: 'Medication Statement Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/medication_statement_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['MedicationStatement'] ||= []
+        end
+
+        run do
+            omit_if !medication_statement_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if medication_statement_data.strip[0] != '{'
+                assert_valid_http_uri(medication_statement_data, "Location provided is not a valid http uri.")
+                get medication_statement_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(medication_statement_data, "JSON inputted was not in a valid format")
+                data = medication_statement_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_related_person_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadRelatedPersonTest < Inferno::Test
+        id :uds_plus_read_related_person_test
+        title 'Receive UDS+ Related Person Data'
+        description %(
+            Test takes from the user either: the http location of related person data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :related_person_data,
+            title: 'Related Person Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/related_person_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['RelatedPerson'] ||= []
+        end
+
+        run do
+            omit_if !related_person_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if related_person_data.strip[0] != '{'
+                assert_valid_http_uri(related_person_data, "Location provided is not a valid http uri.")
+                get related_person_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(related_person_data, "JSON inputted was not in a valid format")
+                data = related_person_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_service_request_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadServiceRequestTest < Inferno::Test
+        id :uds_plus_read_service_request_test
+        title 'Receive UDS+ Service Request Data'
+        description %(
+            Test takes from the user either: the http location of service request data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :service_request_data,
+            title: 'Service Request Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/service_request_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['ServiceRequest'] ||= []
+        end
+
+        run do
+            omit_if !service_request_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if service_request_data.strip[0] != '{'
+                assert_valid_http_uri(service_request_data, "Location provided is not a valid http uri.")
+                get service_request_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(service_request_data, "JSON inputted was not in a valid format")
+                data = service_request_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_special_observation_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadSpecialObservationTest < Inferno::Test
+        id :uds_plus_read_special_observation_test
+        title 'Receive UDS+ Special Observation Data'
+        description %(
+            Test takes from the user either: the http location of special observation data 
+            (such as uds-special-population-observation) or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :special_observation_data,
+            title: 'Special Observation Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/special_observation_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Observation'] ||= []
+        end
+
+        run do
+            omit_if !special_observation_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if special_observation_data.strip[0] != '{'
+                assert_valid_http_uri(special_observation_data, "Location provided is not a valid http uri.")
+                get special_observation_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(special_observation_data, "JSON inputted was not in a valid format")
+                data = special_observation_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end