uds_plus_test_kit 0.9.1 → 1.0.1
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- checksums.yaml +4 -4
- data/lib/uds_plus_test_kit/examples/condition.ndjson +1 -0
- data/lib/uds_plus_test_kit/examples/encounter.ndjson +1 -0
- data/lib/uds_plus_test_kit/examples/invalid_condition.ndjson +1 -0
- data/lib/uds_plus_test_kit/examples/invalid_encounter.ndjson +1 -0
- data/lib/uds_plus_test_kit/examples/invalid_patient.ndjson +2 -0
- data/lib/uds_plus_test_kit/examples/manifest.json +76 -14
- data/lib/uds_plus_test_kit/examples/observation.ndjson +3 -0
- data/lib/uds_plus_test_kit/examples/patient.ndjson +2 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_immunization_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_lab_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_med_request_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_med_statement_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_related_person_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_service_request_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_special_observation_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/resource_group.rb +30 -2
- data/lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb +4 -1
- data/lib/uds_plus_test_kit/manifest_tests/uds_plus_test_group.rb +16 -2
- data/lib/uds_plus_test_kit/post_tests/post_group.rb +59 -0
- data/lib/uds_plus_test_kit/post_tests/post_manifest_test.rb +41 -0
- data/lib/uds_plus_test_kit/post_tests/read_post_test.rb +32 -0
- data/lib/uds_plus_test_kit/uds_plus_test_suite.rb +40 -0
- data/lib/uds_plus_test_kit/validate_immunization_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_income_test.rb +7 -10
- data/lib/uds_plus_test_kit/validate_lab_test.rb +65 -0
- data/lib/uds_plus_test_kit/validate_med_request_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_med_statement_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_related_person_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_service_request_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_sexual_orientation_test.rb +6 -9
- data/lib/uds_plus_test_kit/validate_special_observation_test.rb +65 -0
- data/lib/uds_plus_test_kit/version.rb +2 -2
- metadata +26 -4
- data/lib/uds_plus_test_kit/examples/manifest_2.json +0 -101
- data/lib/uds_plus_test_kit/examples/manifest_not_deidentified.json +0 -67
checksums.yaml
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metadata.gz:
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metadata.gz: 891c9ba749e3b6939300314696ca315585a1d7a0142a6ed8bd36a13f6604a275
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data.tar.gz: 76ad5cb9ba7cbcf3e7f32d4c5971a3585b6612c517f4f0ad8c7aeddcf441aa49
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metadata.gz: c55b0176836f1a674be73c3c3274aae3d67572f3652776dc787b11fd04dce4b406535277955065c260a55490f8ff2ea9adf6ca6a7e9b7fa39b3613f69562f969
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data.tar.gz: c82a7bf34b65b49e6258ea1f4a17fc3d766bb07ec60b835ae7db3f69cb6259b5904e22f9b248bc54ebd70736158ea4a0c8508db6d0f260994b77d775e6a54f4d
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{ "resourceType": "Condition", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Diagnosis Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This example of a UDS+ Diagnosis profile which illustrates its use to capture de-identified information about a patient's diagnosis." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-diagnosis" ] }, "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate", "valueDateTime": "2007" } ], "clinicalStatus": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", "code": "active", "display": "Active" } ] }, "verificationStatus": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/condition-ver-status", "code": "confirmed", "display": "Confirmed" } ] }, "category": [ { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/condition-category", "code": "problem-list-item", "display": "Problem List Item" } ] } ], "code": { "coding": [ { "system": "http://hl7.org/fhir/sid/icd-10-cm", "code": "B18.2", "display": "Chronic viral hepatitis C" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "onsetDateTime": "2007", "recordedDate": "2007"}
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{ "resourceType": "Encounter", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-Identified Encounter Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is an encounter example for the *US Core Encounter Profile*." } ], "lastUpdated": "2022-05-26T11:56:57.250-04:00", "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-encounter" ] }, "extension": [ { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value": 36, "unit": "yr", "system": "http://unitsofmeasure.org", "code": "a" } } ], "status": "finished", "class": { "system": "http://terminology.hl7.org/CodeSystem/v3-ActCode", "code": "AMB", "display": "ambulatory" }, "type": [ { "coding": [ { "system": "http://www.ama-assn.org/go/cpt", "code": "99201" } ] } ], "subject": { "reference": "Patient/de-identified-example" }, "period": { "start": "2022", "end": "2022" }, "hospitalization": { "dischargeDisposition": { "coding": [ { "system": "http://www.nubc.org/patient-discharge", "code": "01", "display": "Discharged to Home" } ] } }, "location": [ { "location": { "reference": "Location/hospital", "display": "Holy Family Hospital" } } ]}
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{ "resourceType" : "Condition", "id" : "example", "meta" : { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "Diagnosis Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This example of a US Core Condition Problems and Health Concerns Profile illustrates its use to capture information about a patient's diagnosis." } ], "profile" : [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition-problems-health-concerns" ] }, "text" : { "status" : "extensions", "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Condition</b><a name=\"example\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Condition "example" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"http://hl7.org/fhir/us/core/STU6/StructureDefinition-us-core-condition-problems-health-concerns.html\">US Core Condition Problems and Health Concerns Profile</a></p></div><p><b>assertedDate</b>: 2007-12-14</p><p><b>clinicalStatus</b>: Active <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-condition-clinical.html\">Condition Clinical Status Codes</a>#active)</span></p><p><b>verificationStatus</b>: Confirmed <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-condition-ver-status.html\">ConditionVerificationStatus</a>#confirmed)</span></p><p><b>category</b>: Problem List Items <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-condition-category.html\">Condition Category Codes</a>#problem-list-item "Problem List Item")</span></p><p><b>code</b>: Chronic viral hepatitis C <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-icd10CM.html\">International Classification of Diseases, 10th Revision, Clinical Modification (ICD-10-CM)</a>#B18.2)</span></p><p><b>subject</b>: <a href=\"Patient-example.html\">Patient/example: Amy Shaw</a> " SHAW"</p><p><b>onset</b>: 2007-12-14</p><p><b>recordedDate</b>: 2007-12-14 07:15:07-0800</p><p><b>note</b>: Amy Shaw has Hepatitis</p></div>" }, "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/condition-assertedDate", "valueDateTime" : "2007-12-14" } ], "clinicalStatus" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", "code" : "active", "display" : "Active" } ], "text" : "Active" }, "verificationStatus" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", "code" : "confirmed", "display" : "Confirmed" } ], "text" : "Confirmed" }, "category" : [ { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/condition-category", "code" : "problem-list-item", "display" : "Problem List Item" } ], "text" : "Problem List Items" } ], "code" : { "coding" : [ { "system" : "http://hl7.org/fhir/sid/icd-10-cm", "code" : "B18.2", "display" : "Chronic viral hepatitis C" } ], "text" : "Chronic viral hepatitis C" }, "subject" : { "reference" : "Patient/example", "display" : "Amy Shaw" }, "onsetDateTime" : "2007-12-14", "recordedDate" : "2007-12-14T07:15:07-08:00", "note" : [ { "text" : "Amy Shaw has Hepatitis" } ] }
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{ "resourceType" : "Encounter", "id" : "example", "meta" : { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "Encounter Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is an encounter example for the *US Core Encounter Profile*." } ], "lastUpdated" : "2017-05-26T11:56:57.250-04:00", "profile" : [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter" ] }, "text" : { "status" : "extensions", "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-1\" Updated \"2017-05-26 11:56:57-0400\" </p><p style=\"margin-bottom: 0px\">Profile:US Core Encounter Profile</p></div><p><b>status</b>: finished</p><p><b>class</b>: ambulatory (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code AMB = 'ambulatory', stated as 'ambulatory')</p><p><b>type</b>: Office Visit <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-CPT.html\">Current Procedural Terminology (CPT)</a>#99201)</span></p><p><b>subject</b>: <a href=\"Patient-example.html\">Patient/example</a> \" SHAW\"</p><p><b>period</b>: 2015-11-01 05:00:14-0500 --> 2015-11-01 06:00:14-0500</p></div>" }, "status" : "finished", "class" : { "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", "code" : "AMB", "display" : "ambulatory" }, "type" : [ { "coding" : [ { "system" : "http://www.ama-assn.org/go/cpt", "code" : "99201" } ], "text" : "Office Visit" } ], "subject" : { "reference" : "Patient/example", "display" : "Amy" }, "period" : { "start" : "2015-11-01T17:00:14-05:00", "end" : "2015-11-01T18:00:14-05:00" }, "hospitalization" : { "dischargeDisposition" : { "coding" : [ { "system" : "http://www.nubc.org/patient-discharge", "code" : "01", "display" : "Discharged to Home" } ], "text" : "Amy was dischaged to home" } }, "location" : [ { "location" : { "reference" : "Location/hospital", "display" : "Holy Family Hospital" } } ] }
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{ "resourceType" : "Patient", "id" : "smallpop-example", "meta" : { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "Patient Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is a patient example for the *US Core Patient Profile*." } ], "profile" : [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] }, "text" : { "status" : "generated", "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>" }, "extension" : [ { "extension" : [ { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2106-3", "display" : "White" } }, { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "1002-5", "display" : "American Indian or Alaska Native" } }, { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2028-9", "display" : "Asian" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "1586-7", "display" : "Shoshone" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2036-2", "display" : "Filipino" } }, { "url" : "text", "valueString" : "Mixed" } ], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension" : [ { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2135-2", "display" : "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2148-5", "display" : "Mexican" } }, { "url" : "text", "valueString" : "Hispanic or Latino" } ], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode" : "F" }, { "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code" : "ASKU", "display" : "asked but unknown" } ], "text" : "asked but unknown" } } ], "identifier" : [ { "use" : "usual", "type" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v2-0203", "code" : "MR", "display" : "Medical Record Number" } ], "text" : "Medical Record Number" }, "system" : "http://hospital.smarthealthit.org", "value" : "1032702" } ], "active" : true, "name" : [ { "use" : "old", "family" : "Shaw", "given" : [ "Amy", "V." ], "period" : { "start" : "2016-12-06", "end" : "2020-07-22" } }, { "family" : "Baxter", "given" : [ "Amy", "V." ], "suffix" : [ "PharmD" ], "period" : { "start" : "2020-07-22" } } ], "telecom" : [ { "system" : "phone", "value" : "555-555-5555", "use" : "home" }, { "system" : "email", "value" : "amy.shaw@example.com" } ], "gender" : "female", "birthDate" : "1987-02-20", "address" : [ { "use" : "old", "line" : [ "49 Meadow St" ], "city" : "Norton", "state" : "VT", "postalCode" : "05907", "country" : "US", "period" : { "start" : "2016-12-06", "end" : "2020-07-22" } }, { "line" : [ "183 Mountain View St" ], "city" : "Norton", "state" : "VT", "postalCode" : "05907", "country" : "US", "period" : { "start" : "2020-07-22" } } ] }
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{ "resourceType" : "Patient", "id" : "example", "meta" : { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString" : "Patient Example" }, { "url" : "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown" : "This is a patient example for the *US Core Patient Profile*." } ], "profile" : [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] }, "text" : { "status" : "generated", "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>" }, "extension" : [ { "extension" : [ { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2106-3", "display" : "White" } }, { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "1002-5", "display" : "American Indian or Alaska Native" } }, { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2028-9", "display" : "Asian" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "1586-7", "display" : "Shoshone" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2036-2", "display" : "Filipino" } }, { "url" : "text", "valueString" : "Mixed" } ], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension" : [ { "url" : "ombCategory", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2135-2", "display" : "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2148-5", "display" : "Mexican" } }, { "url" : "text", "valueString" : "Hispanic or Latino" } ], "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode" : "F" }, { "url" : "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code" : "ASKU", "display" : "asked but unknown" } ], "text" : "asked but unknown" } } ], "identifier" : [ { "use" : "usual", "type" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v2-0203", "code" : "MR", "display" : "Medical Record Number" } ], "text" : "Medical Record Number" }, "system" : "http://hospital.smarthealthit.org", "value" : "1032702" } ], "active" : true, "name" : [ { "use" : "old", "family" : "Shaw", "given" : [ "Amy", "V." ], "period" : { "start" : "2016-12-06", "end" : "2020-07-22" } }, { "family" : "Baxter", "given" : [ "Amy", "V." ], "suffix" : [ "PharmD" ], "period" : { "start" : "2020-07-22" } } ], "telecom" : [ { "system" : "phone", "value" : "555-555-5555", "use" : "home" }, { "system" : "email", "value" : "amy.shaw@example.com" } ], "gender" : "female", "birthDate" : "1987-02-20", "address" : [ { "use" : "old", "line" : [ "49 Meadow St" ], "city" : "Alstead", "state" : "NH", "postalCode" : "03602", "country" : "US", "period" : { "start" : "2016-12-06", "end" : "2020-07-22" } }, { "line" : [ "183 Mountain View St" ], "city" : "Alstead", "state" : "NH", "postalCode" : "03602", "country" : "US", "period" : { "start" : "2020-07-22" } } ] }
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{
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"name" : "grantNumber",
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},
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{
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"name" : "hcName",
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"valueString" : "Example FQHC"
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},
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{
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"name" : "hcAddress",
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"valueAddress" : {
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"line": [
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"123 Rocky point place"
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],
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"city": "Atlanta",
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"state": "GA",
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"postalCode": "23434",
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"country": "US"
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}
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},
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{
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"name" : "hcContactPerson",
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"valueHumanName" : {
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"family": "Taylor",
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"given": [
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"Elizabeth"
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]
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}
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},
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{
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"valueContactPoint" : {
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"system": "phone",
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"value": "234-234-5648"
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}
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}
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]
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},
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{
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"name" : "importProtocol",
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"valueCode" : "https"
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},
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{
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"name": "udsData",
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{
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@@ -63,6 +108,23 @@
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}
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]
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},
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{
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"name": "udsData",
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"part": [
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{
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"name": "type",
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"valueCode": "Observation"
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},
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{
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"name": "url",
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"valueUrl": "http://localhost:4567/custom/uds_plus/examples/observation"
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},
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{
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"name": "expirationTime",
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"valueDateTime": "2022-12-14T07:15:07-08:00"
|
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}
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]
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+
},
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|
{
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"name": "udsData",
|
|
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|
"part": [
|
|
@@ -0,0 +1,3 @@
|
|
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1
|
+
{ "resourceType": "Observation", "id": "de-identified-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-lab-observation" ] }, "status": "final", "category": [ { "coding": [ { "system" : "http://terminology.hl7.org/CodeSystem/observation-category", "code" : "laboratory", "display" : "Laboratory" } ] } ], "code": { "coding": [ { "system" : "http://loinc.org", "code" : "718-7", "display" : "Hemoglobin [Mass/volume] in Blood" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "encounter": { "reference": "Encounter/de-identified-example" }, "effectiveDateTime" : "2005", "issued": "2005-04-03T15:30:10+01:00", "performer": [ { "reference": "Practitioner/example" } ], "valueQuantity" : { "value" : 17, "unit" : "g/dL", "system" : "http://unitsofmeasure.org" }, "bodySite": { "coding": [ { "system": "http://snomed.info/sct", "code": "368208006", "display": "Left upper arm structure" } ] }}
|
|
2
|
+
{ "resourceType": "Observation", "id": "de-identified-income-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "63058-2" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "effectiveDateTime": "2016-03-28", "valueRange": { "low": { "value": 101 }, "high": { "value": 150 } }}
|
|
3
|
+
{ "resourceType": "Observation", "id": "de-identified-sexual-orientation-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "76690-7" } ] }, "subject": { "reference": "Patient/example" }, "effectiveDateTime": "2007", "valueCodeableConcept": { "coding": [ { "system": "http://snomed.info/sct", "code": "20430005", "display": "Heterosexual state" } ] }}
|
|
@@ -0,0 +1,2 @@
|
|
|
1
|
+
{ "resourceType": "Patient", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status", "valueCode": "migratory" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-housing-status-extension", "valueCode": "permanent-supportive-housing" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-veteran-status-extension", "valueBoolean": false } ], "active": true, "gender": "female", "address": [ { "postalCode": "03600" } ]}
|
|
2
|
+
{ "resourceType": "Patient", "id": "de-identified-smallpop-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } } ], "active": true, "gender": "female", "address": [ { "postalCode": "00000", "_postalCode": { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason", "valueCode" : "masked" }] } } ]}
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadImmunizationTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_immunization_test
|
|
6
|
+
title 'Receive UDS+ Immunization Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of immunization data
|
|
9
|
+
or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :immunization_data,
|
|
15
|
+
title: 'Immunization Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/immunization_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['Immunization'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !immunization_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if immunization_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(immunization_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get immunization_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(immunization_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = immunization_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadLabTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_lab_test
|
|
6
|
+
title 'Receive UDS+ Lab Observation Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of lab observation data
|
|
9
|
+
or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :lab_data,
|
|
15
|
+
title: 'Lab Observation Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/lab_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['Observation'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !lab_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if lab_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(lab_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get lab_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(lab_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = lab_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadMedicationRequestTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_medication_request_test
|
|
6
|
+
title 'Receive UDS+ Medication Request Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of medication request data
|
|
9
|
+
or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :medication_request_data,
|
|
15
|
+
title: 'Medication Request Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/medication_request_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['MedicationRequest'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !medication_request_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if medication_request_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(medication_request_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get medication_request_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(medication_request_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = medication_request_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadMedicationStatementTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_medication_statement_test
|
|
6
|
+
title 'Receive UDS+ Medication Statement Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of medication statement data
|
|
9
|
+
or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :medication_statement_data,
|
|
15
|
+
title: 'Medication Statement Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/medication_statement_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['MedicationStatement'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !medication_statement_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if medication_statement_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(medication_statement_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get medication_statement_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(medication_statement_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = medication_statement_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadRelatedPersonTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_related_person_test
|
|
6
|
+
title 'Receive UDS+ Related Person Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of related person data
|
|
9
|
+
or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :related_person_data,
|
|
15
|
+
title: 'Related Person Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/related_person_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['RelatedPerson'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !related_person_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if related_person_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(related_person_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get related_person_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(related_person_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = related_person_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadServiceRequestTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_service_request_test
|
|
6
|
+
title 'Receive UDS+ Service Request Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of service request data
|
|
9
|
+
or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :service_request_data,
|
|
15
|
+
title: 'Service Request Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/service_request_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['ServiceRequest'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !service_request_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if service_request_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(service_request_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get service_request_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(service_request_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = service_request_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
|
|
3
|
+
module UDSPlusTestKit
|
|
4
|
+
class ReadSpecialObservationTest < Inferno::Test
|
|
5
|
+
id :uds_plus_read_special_observation_test
|
|
6
|
+
title 'Receive UDS+ Special Observation Data'
|
|
7
|
+
description %(
|
|
8
|
+
Test takes from the user either: the http location of special observation data
|
|
9
|
+
(such as uds-special-population-observation) or the raw JSON of the data itself.
|
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
input :special_observation_data,
|
|
15
|
+
title: 'Special Observation Data',
|
|
16
|
+
optional: true,
|
|
17
|
+
description: %q(
|
|
18
|
+
User can input the data as:
|
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/special_observation_data.json)
|
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
|
21
|
+
)
|
|
22
|
+
|
|
23
|
+
def data_scratch
|
|
24
|
+
scratch[:data_resources] ||= {}
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def data_to_test
|
|
28
|
+
data_scratch['Observation'] ||= []
|
|
29
|
+
end
|
|
30
|
+
|
|
31
|
+
run do
|
|
32
|
+
omit_if !special_observation_data.present?, "No data provided; skipping test."
|
|
33
|
+
|
|
34
|
+
# if the input is a url, else it is a json
|
|
35
|
+
if special_observation_data.strip[0] != '{'
|
|
36
|
+
assert_valid_http_uri(special_observation_data, "Location provided is not a valid http uri.")
|
|
37
|
+
get special_observation_data
|
|
38
|
+
assert_response_status(200)
|
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
|
40
|
+
data = request.response_body
|
|
41
|
+
else
|
|
42
|
+
assert_valid_json(special_observation_data, "JSON inputted was not in a valid format")
|
|
43
|
+
data = special_observation_data
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
resource = FHIR::Json.from_json(data)
|
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
|
48
|
+
|
|
49
|
+
if resource.is_a?(FHIR::Model)
|
|
50
|
+
data_to_test << resource
|
|
51
|
+
end
|
|
52
|
+
end
|
|
53
|
+
end
|
|
54
|
+
end
|