texstyles 0.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.gitignore +50 -0
- data/.travis.yml +4 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +21 -0
- data/README.md +34 -0
- data/Rakefile +10 -0
- data/lib/texstyles.rb +26 -0
- data/lib/texstyles/style.rb +38 -0
- data/styles/a0poster-landscape.tex.erb +84 -0
- data/styles/a0poster-portrait.tex.erb +84 -0
- data/styles/aa.tex.erb +46 -0
- data/styles/aa_onecolumn.tex.erb +45 -0
- data/styles/aa_twocolumn.tex.erb +47 -0
- data/styles/aaai.tex.erb +29 -0
- data/styles/abnt.tex.erb +141 -0
- data/styles/acl.tex.erb +46 -0
- data/styles/acm.tex.erb +77 -0
- data/styles/acm_large.tex.erb +82 -0
- data/styles/acm_sig_alternate.tex.erb +116 -0
- data/styles/acm_sig_strict.tex.erb +90 -0
- data/styles/acs.tex.erb +76 -0
- data/styles/agu.tex.erb +211 -0
- data/styles/aiaa.tex.erb +84 -0
- data/styles/aip_preprint.tex.erb +65 -0
- data/styles/aip_reprint.tex.erb +67 -0
- data/styles/aisb2008.tex.erb +31 -0
- data/styles/aj_manuscript.tex.erb +76 -0
- data/styles/aj_preprint.tex.erb +78 -0
- data/styles/ajps.tex.erb +69 -0
- data/styles/alma.tex.erb +53 -0
- data/styles/ams_one.tex.erb +115 -0
- data/styles/ams_two.tex.erb +119 -0
- data/styles/apa_doc.tex.erb +21 -0
- data/styles/apj_emulate.tex.erb +104 -0
- data/styles/apj_manuscript.tex.erb +76 -0
- data/styles/aps.tex.erb +79 -0
- data/styles/aps_preprint.tex.erb +79 -0
- data/styles/article.tex.erb +28 -0
- data/styles/asp.tex.erb +26 -0
- data/styles/authorea-double-numbered.tex.erb +65 -0
- data/styles/authorea-double.tex.erb +62 -0
- data/styles/authorea-numbered.tex.erb +62 -0
- data/styles/authorea.tex.erb +59 -0
- data/styles/biogeosciences.tex.erb +71 -0
- data/styles/bioinformatics.tex.erb +34 -0
- data/styles/bmc.tex.erb +212 -0
- data/styles/book.tex.erb +22 -0
- data/styles/cernatsnote.tex.erb +28 -0
- data/styles/cernyrep.tex.erb +28 -0
- data/styles/chandra.tex.erb +182 -0
- data/styles/cogsci.tex.erb +43 -0
- data/styles/cornell.tex.erb +75 -0
- data/styles/cv.tex.erb +30 -0
- data/styles/development.tex.erb +55 -0
- data/styles/dfgproposal.tex.erb +103 -0
- data/styles/dod.tex.erb +221 -0
- data/styles/doe.tex.erb +62 -0
- data/styles/econf.tex.erb +174 -0
- data/styles/egu.tex.erb +73 -0
- data/styles/elsevier.tex.erb +138 -0
- data/styles/elsevier_review.tex.erb +140 -0
- data/styles/elsevier_softwarex.tex.erb +132 -0
- data/styles/elsevier_twocolumn.tex.erb +148 -0
- data/styles/empty.tex.erb +29 -0
- data/styles/epjc.tex.erb +78 -0
- data/styles/f1000.tex.erb +38 -0
- data/styles/frontiersENG.tex.erb +66 -0
- data/styles/frontiersFPHY.tex.erb +67 -0
- data/styles/frontiersMED.tex.erb +66 -0
- data/styles/frontiersSCNS.tex.erb +66 -0
- data/styles/g3.tex.erb +57 -0
- data/styles/geophysics.tex.erb +38 -0
- data/styles/gji.tex.erb +51 -0
- data/styles/hess.tex.erb +71 -0
- data/styles/hst.tex.erb +37 -0
- data/styles/iclr.tex.erb +35 -0
- data/styles/ieee_bare_conf.tex.erb +316 -0
- data/styles/ieee_bare_jrnl.tex.erb +459 -0
- data/styles/ieee_bare_jrnl_compsoc.tex.erb +530 -0
- data/styles/ifac.tex.erb +36 -0
- data/styles/ijcai.tex.erb +60 -0
- data/styles/imsart_aas.tex.erb +82 -0
- data/styles/imsart_as.tex.erb +82 -0
- data/styles/iop.tex.erb +93 -0
- data/styles/iram_proposal.tex.erb +93 -0
- data/styles/jacow.tex.erb +77 -0
- data/styles/jfm.tex.erb +43 -0
- data/styles/jhep.tex.erb +57 -0
- data/styles/jinst.tex.erb +46 -0
- data/styles/jrss.tex.erb +32 -0
- data/styles/jxb.tex.erb +56 -0
- data/styles/lncs.tex.erb +75 -0
- data/styles/mdpi.tex.erb +122 -0
- data/styles/mit.tex.erb +186 -0
- data/styles/mnras.tex.erb +41 -0
- data/styles/nasa.tex.erb +111 -0
- data/styles/nature.tex.erb +34 -0
- data/styles/nature_scirep.tex.erb +36 -0
- data/styles/nih.tex.erb +223 -0
- data/styles/nime.tex.erb +82 -0
- data/styles/nips.tex.erb +26 -0
- data/styles/nsf.tex.erb +66 -0
- data/styles/osaexpress.tex.erb +73 -0
- data/styles/osaletters.tex.erb +54 -0
- data/styles/peerj.tex.erb +45 -0
- data/styles/plos.tex.erb +69 -0
- data/styles/plos2015.tex.erb +237 -0
- data/styles/pnas.tex.erb +118 -0
- data/styles/report.tex.erb +17 -0
- data/styles/rsc.tex.erb +99 -0
- data/styles/sciadvances.tex.erb +120 -0
- data/styles/science.tex.erb +127 -0
- data/styles/sigchi.tex.erb +91 -0
- data/styles/sigplan.tex.erb +94 -0
- data/styles/spie.tex.erb +68 -0
- data/styles/spieman.tex.erb +75 -0
- data/styles/springer.tex.erb +92 -0
- data/styles/springer_twocolumn.tex.erb +92 -0
- data/styles/svmono.tex.erb +63 -0
- data/styles/trb.tex.erb +150 -0
- data/styles/tufte-handout.tex.erb +60 -0
- data/styles/uchicago.tex.erb +53 -0
- data/styles/ucriverside.tex.erb +79 -0
- data/styles/uiowa.tex.erb +78 -0
- data/styles/umich.tex.erb +68 -0
- data/styles/uvic.tex.erb +196 -0
- data/styles/uwollongong.tex.erb +149 -0
- data/texstyles.gemspec +25 -0
- metadata +258 -0
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%
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% Annual Cognitive Science Conference
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% Sample LaTeX Paper -- Proceedings Format
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%
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% Original : Ashwin Ram (ashwin@cc.gatech.edu) 04/01/1994
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% Modified : Johanna Moore (jmoore@cs.pitt.edu) 03/17/1995
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% Modified : David Noelle (noelle@ucsd.edu) 03/15/1996
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% Modified : Pat Langley (langley@cs.stanford.edu) 01/26/1997
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% Latex2e corrections by Ramin Charles Nakisa 01/28/1997
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% Modified : Tina Eliassi-Rad (eliassi@cs.wisc.edu) 01/31/1998
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% Modified : Trisha Yannuzzi (trisha@ircs.upenn.edu) 12/28/1999 (in process)
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% Modified : Mary Ellen Foster (M.E.Foster@ed.ac.uk) 12/11/2000
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% Modified : Ken Forbus 01/23/2004
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% Modified : Eli M. Silk (esilk@pitt.edu) 05/24/2005
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% Modified : Niels Taatgen (taatgen@cmu.edu) 10/24/2006
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% Modified : David Noelle (dnoelle@ucmerced.edu) 11/19/2014
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%% Change "letterpaper" in the following line to "a4paper" if you must.
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\documentclass[10pt,letterpaper]{article}
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<%=@default_packages%>
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\usepackage{cogsci}
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\usepackage{pslatex}
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\usepackage{apacite}
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<%=@header%>
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\title{<%=@long_title%>}
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<% if !@alternative_author_string.to_s.empty? %>
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<%= @alternative_author_string %>
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<% else %>
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\author{{\large \bf <%=@first_author%>}\\ <%=@first_affiliation%> <% if !@coauthor_list.to_a.empty? %><% for i in (0..@coauthor_list.length-1) %> \AND {\large \bf <%=@coauthor_list[i]%>}\\ <%=@coauthor_affiliations[i]%><% end %><% end %>}
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<% end %>
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\begin{document}
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\maketitle
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<%= @abstract_begin_end %>
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\documentclass[phd,tocprelim]{cornell}
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%
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% tocprelim option must be included to put the roman numeral pages in the
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% table of contents
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%
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% The cornellheadings option will make headings completely consistent with
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% guidelines.
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%
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% This sample document was originally provided by Blake Jacquot, and
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% fixed up by Andrew Myers.
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%
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%Some possible packages to include
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\usepackage{graphicx,pstricks}
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\usepackage{graphics}
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\usepackage{moreverb}
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\usepackage{subfigure}
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\usepackage{epsfig}
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\usepackage{subfigure}
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\usepackage{hangcaption}
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\usepackage{txfonts}
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\usepackage{palatino}
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<%=@default_packages%>
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<%=@header%>
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%if you're having problems with overfull boxes, you may need to increase
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%the tolerance to 9999
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\tolerance=9999
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\renewcommand{\caption}[1]{\singlespacing\hangcaption{#1}\normalspacing}
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\renewcommand{\topfraction}{0.85}
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\renewcommand{\textfraction}{0.1}
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\renewcommand{\floatpagefraction}{0.75}
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\title {<%=@long_title%>}
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<% if !@alternative_author_string.to_s.empty? %>
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<%= @alternative_author_string %>
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<% else %>
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\author {<%=@first_author%>}
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<% end %>
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\conferraldate {June}{2014}
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\degreefield {Ph.D.}
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\copyrightholder{<%=@first_author%>}
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\copyrightyear{2014}
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\begin{document}
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\maketitle
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\makecopyright
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\begin{abstract}
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<%=@abstract%>
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\end{abstract}
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%\begin{biosketch}
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%Your biosketch goes here. Make sure it sits inside
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%the brackets.
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%\end{biosketch}
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%\begin{dedication}
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%This document is dedicated to all Cornell graduate students.
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%\end{dedication}
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%\begin{acknowledgements}
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%Your acknowledgements go here. Make sure it sits inside the brackets.
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%\end{acknowledgements}
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\contentspage
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\tablelistpage
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\figurelistpage
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\normalspacing \setcounter{page}{1} \pagenumbering{arabic}
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\pagestyle{cornell} \addtolength{\parskip}{0.5\baselineskip}
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data/styles/cv.tex.erb
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\documentclass[a4paper,11pt]{article}
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<%=@default_packages%>
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<%=@header%>
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\usepackage{titlesec} %custom \section
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\titleformat{\section}{\Large\scshape\raggedright}{}{0em}{}[\titlerule]
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\titlespacing{\section}{0pt}{3pt}{3pt}
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\setlength\parindent{0pt}
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\makeatletter
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\renewcommand\@biblabel[1]{}
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\makeatother
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\usepackage{geometry}
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\geometry{margin=0.75in}
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\usepackage{datetime}
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\newdateformat{monthyeardate}{%
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\monthname[\THEMONTH], \THEYEAR}
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\begin{document}
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\title{\bfseries\large <%=@long_title%>}
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\date{\vspace{-1.0cm}\monthyeardate\today}
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\maketitle
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\documentclass[10pt,a4paper]{article}
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<%=@default_packages%>
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\usepackage[usenames,dvipsnames]{xcolor}
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\hypersetup{colorlinks=true,linkcolor=BrickRed,citecolor=OliveGreen,urlcolor=MidnightBlue}
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% Use doublespacing
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\usepackage{setspace}
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\doublespacing
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% Text layout
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\topmargin 0.0cm
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\oddsidemargin 0.5cm
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\evensidemargin 0.5cm
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\textwidth 16cm
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\textheight 21cm
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% Figure labels
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\usepackage[labelfont=bf,labelsep=endash,justification=raggedright]{caption}
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% Leave date blank
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\date{}
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<%=@header%>
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\begin{document}
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% \linenumbers
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\begin{flushleft}
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{\LARGE
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\textbf{<%=@long_title%>}
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}
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% Insert Author names, affiliations and corresponding author email.
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<% if !@alternative_author_string.to_s.empty? %>
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<%= @alternative_author_string %>
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<% else %>
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\\
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<%=@first_author%>$^{1}$<% if !@coauthor_list.to_a.empty? %><% for i in (0..@coauthor_list.length-1) %>, <%=@coauthor_list[i]%>$^{<%=i+2%>}$<% end %><% end %>
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\\
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{\bf 1} <%=@first_affiliation%>
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\\
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<% if !@coauthor_affiliations.to_a.empty? %><% for i in (0..@coauthor_affiliations.length-1) %>
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{\bf <%=i+2%>} <%=@coauthor_affiliations[i]%>
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\\<% end %><% end %>
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<% end %>
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\end{flushleft}
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<% if @abstract and !@abstract.blank? %>
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\section*{Abstract}
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<%=@abstract%>
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<% end %>
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% The main file for developing the proposal.
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% Variants with different class options are
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% - submit.tex (no draft stuff, no ednotes, no revision information)
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% - public.tex (like submit.tex, but no financials either)
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\newcommand{\classoptions}{submit}
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\providecommand{\unserzusammenfassung}{} % to be orverwritten in header.tex
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\providecommand{\pnacronym}{} % to be orverwritten in header.tex
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\documentclass[RAM,gitinfo\classoptions]{dfgproposal}
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%\addbibresource{../lib/dummy}
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<%=@default_packages%>
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<%=@header%>
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\WAinstitution[id=affiliation1,acronym={<%=@first_affiliation%>},
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%url=http://jacobs-university.de,
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%streetaddress={Campus Ring 1},
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%townzip={28759 Bremen},
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%countryshort=D,
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%country=Germany,
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%type=University,
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%logo=jacobs-logo.png,
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%shortname=Jacobs University
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]
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{<%=@first_affiliation%>}
|
|
25
|
+
\WAperson[id=author1,
|
|
26
|
+
%personaltitle=Prof. Dr.,
|
|
27
|
+
%birthdate=13. September 1964,
|
|
28
|
+
%academictitle=Professor of Computer Science,
|
|
29
|
+
affiliation=affiliation1,
|
|
30
|
+
%department=case,
|
|
31
|
+
privaddress=None of your business,
|
|
32
|
+
privtel=that neither,
|
|
33
|
+
%email=,
|
|
34
|
+
%workaddress={Campus Ring 1, 28757 Bremen},
|
|
35
|
+
%worktel=+49 421 200 3140,
|
|
36
|
+
%worktelfax=+49 421 200 3140/493140,
|
|
37
|
+
%workfax=+49 421 200 493140
|
|
38
|
+
]
|
|
39
|
+
{<%=@first_author%>}
|
|
40
|
+
|
|
41
|
+
<% if !@coauthor_list.to_a.empty? %>
|
|
42
|
+
<% for i in (0..@coauthor_list.length-1) %>
|
|
43
|
+
\WAinstitution[id=affiliation<%=i+2%>,acronym={<%=@coauthor_affiliations[i]%>},
|
|
44
|
+
%url=http://jacobs-university.de,
|
|
45
|
+
%streetaddress={Campus Ring 1},
|
|
46
|
+
%townzip={28759 Bremen},
|
|
47
|
+
%countryshort=D,
|
|
48
|
+
%country=Germany,
|
|
49
|
+
%type=University,
|
|
50
|
+
%logo=jacobs-logo.png,
|
|
51
|
+
%shortname=Jacobs University
|
|
52
|
+
]
|
|
53
|
+
{<%=@coauthor_affiliations[i]%>}
|
|
54
|
+
\WAperson[id=author<%=i+2%>,
|
|
55
|
+
%personaltitle=Prof. Dr.,
|
|
56
|
+
%birthdate=13. September 1964,
|
|
57
|
+
%academictitle=Professor of Computer Science,
|
|
58
|
+
affiliation=affiliation<%=i+2%>,
|
|
59
|
+
%department=case,
|
|
60
|
+
privaddress=None of your business,
|
|
61
|
+
privtel=that neither,
|
|
62
|
+
%email=,
|
|
63
|
+
%workaddress={Campus Ring 1, 28757 Bremen},
|
|
64
|
+
%worktel=+49 421 200 3140,
|
|
65
|
+
%worktelfax=+49 421 200 3140/493140,
|
|
66
|
+
%workfax=+49 421 200 493140
|
|
67
|
+
]
|
|
68
|
+
{<%=@coauthor_list[i]%>}
|
|
69
|
+
<% end %>
|
|
70
|
+
<% end %>
|
|
71
|
+
|
|
72
|
+
% Auto-close {proposal}, if needed
|
|
73
|
+
\newbool{InProposalEnvironment}
|
|
74
|
+
\AtBeginEnvironment{proposal}{\booltrue{InProposalEnvironment}}
|
|
75
|
+
\AtEndDocument{\ifbool{InProposalEnvironment}{\end{proposal}}{}}
|
|
76
|
+
|
|
77
|
+
\begin{document}
|
|
78
|
+
|
|
79
|
+
\begin{proposal}[PI=author1,site=affiliation1<% if !@coauthor_list.to_a.empty? %><% for i in (0..@coauthor_list.length-1) %>,PI=author<%=i+2%>,site=affiliation<%=i+2%><% end %><%end %>,
|
|
80
|
+
thema={<%=@long_title%>},
|
|
81
|
+
acronym=\pnacronym,
|
|
82
|
+
acrolong=<%=@long_title%>,
|
|
83
|
+
title=\pnlong,
|
|
84
|
+
%totalduration=3 years,
|
|
85
|
+
%since=1. Feb 2009,
|
|
86
|
+
%start=1. Feb. 2010,
|
|
87
|
+
%months=24,
|
|
88
|
+
%pcgRM=36, pcgRAM=36, jacuRM=36, jacuRAM=36,
|
|
89
|
+
%discipline=Computer Science,
|
|
90
|
+
%areas=Knowledge Management
|
|
91
|
+
]
|
|
92
|
+
|
|
93
|
+
\begin{Zusammenfassung}
|
|
94
|
+
\unserzusammenfassung
|
|
95
|
+
\end{Zusammenfassung}
|
|
96
|
+
|
|
97
|
+
\begin{Summary}
|
|
98
|
+
%\begin{todo}{copy into the Elan system}
|
|
99
|
+
% Summarize the relevant goals of the proposed project in generally intelligible
|
|
100
|
+
% terms. Do not use more than 3000 characters, no special characters allowed.
|
|
101
|
+
%\end{todo}
|
|
102
|
+
<%= @abstract %>
|
|
103
|
+
\end{Summary}
|
data/styles/dod.tex.erb
ADDED
|
@@ -0,0 +1,221 @@
|
|
|
1
|
+
% This example file for NIH submissions was originally written
|
|
2
|
+
% by Bruce Donald (http://www.cs.duke.edu/brd/).
|
|
3
|
+
% Modified by Authorea for DoD grant proposals
|
|
4
|
+
% You may freely use, modify and/or distribute this file.
|
|
5
|
+
%
|
|
6
|
+
\documentclass[12pt]{dod-blank}
|
|
7
|
+
%\documentclass{article}
|
|
8
|
+
%\documentclass[12pt]{article}%
|
|
9
|
+
% last revision:
|
|
10
|
+
\def\mydate{2005-06-09 13:58:03 brd}
|
|
11
|
+
|
|
12
|
+
|
|
13
|
+
%%%%%%% Two column control
|
|
14
|
+
\newif\ifdotwocol
|
|
15
|
+
\dotwocoltrue % two col
|
|
16
|
+
%\dotwocolfalse % one col
|
|
17
|
+
\long\def\twocol#1#2{\ifdotwocol{#1}\else{#2}\fi}
|
|
18
|
+
%%%%%%%
|
|
19
|
+
|
|
20
|
+
\def\mybeforeequation{\footnotesize}
|
|
21
|
+
%\def\mybeforeequation{\small}
|
|
22
|
+
%\def\mybeforeequation{}
|
|
23
|
+
|
|
24
|
+
\def\myafterequation{\renewcommand\baselinestretch{1.1}}
|
|
25
|
+
%\def\myafterequation{}
|
|
26
|
+
|
|
27
|
+
%%%%%%%%%%%%%%%%
|
|
28
|
+
%%%%%%%%%%%%%%%%
|
|
29
|
+
|
|
30
|
+
\def\citeusmark{$^{\textstyle \star}$}
|
|
31
|
+
\def\citeus#1#2{\cite{#1}}
|
|
32
|
+
|
|
33
|
+
\def\crow#1#2{#2}
|
|
34
|
+
|
|
35
|
+
%\usepackage{denselists}
|
|
36
|
+
%\usepackage{scaledfullpage}
|
|
37
|
+
\usepackage[dvips]{graphicx}
|
|
38
|
+
\usepackage{color}
|
|
39
|
+
\usepackage{boxedminipage}
|
|
40
|
+
\usepackage{amsfonts}
|
|
41
|
+
\usepackage{amsmath}
|
|
42
|
+
\usepackage{url}
|
|
43
|
+
%\usepackage{times}
|
|
44
|
+
%\usepackage{nih} % PHS 398 Forms
|
|
45
|
+
%\usepackage{nihblank} % For printing on Blank PHS 398 Forms
|
|
46
|
+
%\usepackage{confidential}
|
|
47
|
+
|
|
48
|
+
\def\Paper{grant application}
|
|
49
|
+
\def\paper{application}
|
|
50
|
+
\def\refappendix{Sec.}
|
|
51
|
+
|
|
52
|
+
\def\poster{(Poster)}
|
|
53
|
+
|
|
54
|
+
%Note from brd
|
|
55
|
+
\long\def\todo#1{{\bf{To do:}} #1}
|
|
56
|
+
%\long\def\todo#1{}
|
|
57
|
+
\def\ICRA{IEEE International Conference on Robotics and Automation (ICRA)}
|
|
58
|
+
|
|
59
|
+
\long\def\squeezable#1{#1}
|
|
60
|
+
|
|
61
|
+
%\def\a5{$\alpha_{_5}$
|
|
62
|
+
|
|
63
|
+
\def\a5{5}
|
|
64
|
+
|
|
65
|
+
%\def\mycaptionsize{\normalsize}
|
|
66
|
+
%\def\mycaptionsize{\small}
|
|
67
|
+
%\def\mycaptionsize{\small}
|
|
68
|
+
\def\mycaptionsize{\footnotesize}
|
|
69
|
+
\def\mycodesize{\footnotesize}
|
|
70
|
+
\def\myeqnsize{\small}
|
|
71
|
+
|
|
72
|
+
\def\sheading#1{{\bf #1:}\ }
|
|
73
|
+
\def\sheading#1{\subsubsection{#1}}
|
|
74
|
+
%\def\sheading#1{\bigskip {\bf #1.}}
|
|
75
|
+
|
|
76
|
+
\def\ssheading#1{\noindent {\bf #1.}\ }
|
|
77
|
+
|
|
78
|
+
\newtheorem{hypothesis}{Hypothesis}
|
|
79
|
+
\long\def\hyp#1{\begin{hypothesis} #1 \end{hypothesis}}
|
|
80
|
+
|
|
81
|
+
\def\cbk#1{[{\em #1}]}
|
|
82
|
+
|
|
83
|
+
\def\R{\mathbb{R}}
|
|
84
|
+
\def\midv{\mathop{\,|\,}}
|
|
85
|
+
\def\Fscr{\mathcal{F}}
|
|
86
|
+
\def\Gscr{\mathcal{G}}
|
|
87
|
+
\def\Sscr{\mathcal{S}}
|
|
88
|
+
\def\set#1{{\{#1\}}}
|
|
89
|
+
\def\edge{\!\rightarrow\!}
|
|
90
|
+
\def\dedge{\!\leftrightarrow\!}
|
|
91
|
+
\newcommand{\EOP}{\nolinebreak[1]~~~\hspace*{\fill} $\Box$\vspace*{\parskip}\vspace*{1ex}}
|
|
92
|
+
%my way of doing starred references
|
|
93
|
+
\newcommand{\mybibitem}[1]{\bibitem{#1}
|
|
94
|
+
\label{mybiblabel:#1}}
|
|
95
|
+
\newcommand{\BC}{[}
|
|
96
|
+
\newcommand{\EC}{]}
|
|
97
|
+
\newcommand{\mycite}[1]{\ref{mybiblabel:#1}\nocite{#1}}
|
|
98
|
+
\newcommand{\starcite}[1]{\ref{mybiblabel:#1}\citeusmark\nocite{#1}}
|
|
99
|
+
|
|
100
|
+
|
|
101
|
+
\def\degree{$^\circ$}
|
|
102
|
+
\def\R{\mathbb{R}}
|
|
103
|
+
\def\Fscr{\mathcal{F}}
|
|
104
|
+
\def\set#1{{\{#1\}}}
|
|
105
|
+
\def\edge{\!\rightarrow\!}
|
|
106
|
+
\def\dedge{\!\leftrightarrow\!}
|
|
107
|
+
|
|
108
|
+
\long\def\gobble#1{}
|
|
109
|
+
\def\Jigsaw{{\sc Jigsaw}}
|
|
110
|
+
\def\ahelix{\ensuremath{\alpha}-helix}
|
|
111
|
+
\def\ahelices{\ensuremath{\alpha}-helices}
|
|
112
|
+
\def\ahelical{$\alpha$-helical}
|
|
113
|
+
\def\bstrand{\ensuremath{\beta}-strand}
|
|
114
|
+
\def\bstrands{\ensuremath{\beta}-strands}
|
|
115
|
+
\def\bsheet{\ensuremath{\beta}-sheet}
|
|
116
|
+
\def\bsheets{\ensuremath{\beta}-sheets}
|
|
117
|
+
\def\hone{{\ensuremath{^1}\rm{H}}}
|
|
118
|
+
\def\htwo{{$^{2}$H}}
|
|
119
|
+
\def\cthir{{\ensuremath{^{13}}\rm{C}}}
|
|
120
|
+
\def\nfif{{\ensuremath{^{15}}\rm{N}}}
|
|
121
|
+
\def\hn{{\rm{H}\ensuremath{^\mathrm{N}}}}
|
|
122
|
+
\def\hnone{{\textup{H}\ensuremath{^1_\mathrm{N}}}}
|
|
123
|
+
\def\ca{{\rm{C}\ensuremath{^\alpha}}}
|
|
124
|
+
\def\catwel{{\ensuremath{^{12}}\rm{C}\ensuremath{^\alpha}}}
|
|
125
|
+
\def\ha{{\rm{H}\ensuremath{^\alpha}}}
|
|
126
|
+
\def\cb{{\rm{C}\ensuremath{^\beta}}}
|
|
127
|
+
\def\hb{{\rm{H}\ensuremath{^\beta}}}
|
|
128
|
+
\def\hg{{\rm{H}\ensuremath{^\gamma}}}
|
|
129
|
+
\def\dnn{{\ensuremath{d_{\mathrm{NN}}}}}
|
|
130
|
+
\def\dan{{\ensuremath{d_{\alpha \mathrm{N}}}}}
|
|
131
|
+
\def\jconst{{\ensuremath{^{3}\mathrm{J}_{\mathrm{H}^{\mathrm{N}}\mathrm{H}^{\alpha}}}} }
|
|
132
|
+
\def\cbfb{{CBF-$\beta$}}
|
|
133
|
+
|
|
134
|
+
\newtheorem{defn}{Definition}
|
|
135
|
+
\newtheorem{claim}{Claim}
|
|
136
|
+
|
|
137
|
+
\gobble{
|
|
138
|
+
\psfrag{CO}[][]{\colorbox{white}{C}}
|
|
139
|
+
\psfrag{OO}[][]{\colorbox{white}{O}}
|
|
140
|
+
\psfrag{CA}[][]{\colorbox{white}{\ca}}
|
|
141
|
+
\psfrag{HA}[][]{\colorbox{white}{\ha}}
|
|
142
|
+
\psfrag{CB}[][]{\colorbox{white}{\cb}}
|
|
143
|
+
\psfrag{HB}[][]{\colorbox{white}{\hb}}
|
|
144
|
+
\psfrag{HN}[][]{\colorbox{white}{\hn}}
|
|
145
|
+
\psfrag{N15}[][]{\colorbox{white}{\nfif}}
|
|
146
|
+
\psfrag{dnn}[][]{\dnn}
|
|
147
|
+
\psfrag{dan}[][]{\dan}
|
|
148
|
+
\psfrag{phi}[][]{$\phi$}
|
|
149
|
+
}
|
|
150
|
+
|
|
151
|
+
\newenvironment{closeenumerate}{\begin{list}{\arabic{enumi}.}{\topsep=0in\itemsep=0in\parsep=0in\usecounter{enumi}}}{\end{list}}
|
|
152
|
+
\def\CR{\hspace{0pt}} % ``invisible'' space for line break
|
|
153
|
+
|
|
154
|
+
|
|
155
|
+
|
|
156
|
+
\newif\ifdbspacing
|
|
157
|
+
%\dbspacingtrue % For double spacing
|
|
158
|
+
\dbspacingfalse % For normal spacing
|
|
159
|
+
|
|
160
|
+
\ifdbspacing
|
|
161
|
+
\doublespacing
|
|
162
|
+
\newcommand{\capspacing}{\doublespace\mycaptionsize}
|
|
163
|
+
\else
|
|
164
|
+
\newcommand{\capspacing}{\mycaptionsize}
|
|
165
|
+
\fi
|
|
166
|
+
|
|
167
|
+
\def\rulefigure{\smallskip\hrule}
|
|
168
|
+
|
|
169
|
+
% \def\codesize{\normalsize}
|
|
170
|
+
\def\codesize{\small}
|
|
171
|
+
|
|
172
|
+
% Can use macros \be, \ee, \en as shortcuts
|
|
173
|
+
% for \begin{enumerate}, \end{enumerate}, \item
|
|
174
|
+
% respectively.
|
|
175
|
+
|
|
176
|
+
<%=@header%>
|
|
177
|
+
|
|
178
|
+
\def\be{\begin{enumerate}} % Begin Enumerate
|
|
179
|
+
\def\ee{\end{enumerate}} % End Enumerate
|
|
180
|
+
\def\en{\item} % ENtry (item)
|
|
181
|
+
\def\bi{\begin{itemize}} % Begin Itemize
|
|
182
|
+
\def\ei{\end{itemize}} % End Itemize
|
|
183
|
+
\def\bv{\begin{verbatim}} % Begin Verbatim
|
|
184
|
+
\def\ev{\end{verbatim}} % End Verbatim
|
|
185
|
+
|
|
186
|
+
\def\matlab{{\sc matlab} }
|
|
187
|
+
\def\amber{{\sc amber} }
|
|
188
|
+
\def\KS{{$K^*$}}
|
|
189
|
+
\def\KSM{{K^*}} % K-Star Math
|
|
190
|
+
\def\KSTM{{\tilde{K}^*}} % K-Star Tilde Math (appx K*)
|
|
191
|
+
\def\KOP{{$K^{\dagger}_{o}$}} % K-Star Optimal partial
|
|
192
|
+
\def\KOPM{{K^{\dagger}_{o}}} % K-Star Optimal partial Math
|
|
193
|
+
\def\KP{{$K^{\dagger}$}} % K-Star partial
|
|
194
|
+
\def\KPM{{K^{\dagger}}} % K-Star partial Math
|
|
195
|
+
\def\KTPM{{\tilde{K}^{\dagger}}} % K-Star Tilde partial Math
|
|
196
|
+
\def\KD{{$K_{_D}$}}
|
|
197
|
+
\def\KA{{$K_{_A}$}}
|
|
198
|
+
\def\qpM{{q_{_P}}}
|
|
199
|
+
\def\qlM{{q_{_L}}}
|
|
200
|
+
\def\qplM{{q_{_{PL}}}}
|
|
201
|
+
\def\qSplM{{q^*_{_{PL}}}}
|
|
202
|
+
\def\KSO{{$K^*_{o}$}} % K-Star Optimal
|
|
203
|
+
\def\KSOM{{K^*_{o}}} % K-Star Optimal Math
|
|
204
|
+
\def\CBFB{{CBF-$\beta$}} % Core binding factor beta
|
|
205
|
+
\def\argmin{\mathop{\mathrm{argmin}}}
|
|
206
|
+
\def\rhl#1{{\em \underline{RYAN}: *\{{#1}\}*}}
|
|
207
|
+
\def\set#1{{\left\{ #1 \right\}}}
|
|
208
|
+
\def\Escr{{\mathcal{E}}}
|
|
209
|
+
\def\Jscr{{\mathcal{J}}}
|
|
210
|
+
\def\Kscr{{\mathcal{K}}}
|
|
211
|
+
\def\th{{$^{{\mathrm{th}}}$}}
|
|
212
|
+
|
|
213
|
+
\newtheorem{proposition}{Proposition}
|
|
214
|
+
\newtheorem{lemma}{Lemma}
|
|
215
|
+
|
|
216
|
+
|
|
217
|
+
\begin{document}
|
|
218
|
+
|
|
219
|
+
|
|
220
|
+
|
|
221
|
+
|