test_hyrax 0.0.1.alpha

data/.travis.yml

@@ -0,0 +1,28 @@
+language: ruby
+sudo: false
+
+cache:
+  bundler: true
+  directories:
+    - "travis_phantomjs"
+
+before_install:
+  - gem update --system
+  - gem install bundler
+  - "phantomjs --version"
+  - "export PATH=$PWD/travis_phantomjs/phantomjs-2.1.1-linux-x86_64/bin:$PATH"
+  - "if [ $(phantomjs --version) != '2.1.1' ]; then rm -rf $PWD/travis_phantomjs; mkdir -p $PWD/travis_phantomjs; fi"
+  - "if [ $(phantomjs --version) != '2.1.1' ]; then wget https://assets.membergetmember.co/software/phantomjs-2.1.1-linux-x86_64.tar.bz2 -O $PWD/travis_phantomjs/phantomjs-2.1.1-linux-x86_64.tar.bz2; fi"
+  - "if [ $(phantomjs --version) != '2.1.1' ]; then tar -xvf $PWD/travis_phantomjs/phantomjs-2.1.1-linux-x86_64.tar.bz2 -C $PWD/travis_phantomjs; fi"
+  - "phantomjs --version"
+rvm:
+  - 2.4.0
+env:
+  global:
+    - NOKOGIRI_USE_SYSTEM_LIBRARIES=true
+  matrix:
+    - "RAILS_VERSION=5.0.1"
+services:
+  - redis-server
+before_script:
+  - jdk_switcher use oraclejdk8

data/CONTRIBUTING.md

@@ -0,0 +1,159 @@
+# How to Contribute
+
+We want your help to make Project Hydra great.
+There are a few guidelines that we need contributors to follow so that we can have a chance of keeping on top of things.
+
+## Code of Conduct
+
+The Hydra community is dedicated to providing a welcoming and positive experience for all its
+members, whether they are at a formal gathering, in a social setting, or taking part in activities
+online.  Please see our [Code of Conduct](https://wiki.duraspace.org/display/hydra/Code+of+Conduct)
+for more information.
+
+## Hydra Project Intellectual Property Licensing and Ownership
+
+All code contributors must have an Individual Contributor License Agreement (iCLA) on file with the Hydra Project Steering Group.
+If the contributor works for an institution, the institution must have a Corporate Contributor License Agreement (cCLA) on file.
+
+https://wiki.duraspace.org/display/hydra/Hydra+Project+Intellectual+Property+Licensing+and+Ownership
+
+You should also add yourself to the `CONTRIBUTORS.md` file in the root of the project.
+
+## Contribution Tasks
+
+* Reporting Issues
+* Making Changes
+* Documenting Code
+* Committing Changes
+* Submitting Changes
+* Reviewing and Merging Changes
+
+### Reporting Issues
+
+* Make sure you have a [GitHub account](https://github.com/signup/free)
+* Submit a [Github issue](./issues) by:
+  * Clearly describing the issue
+    * Provide a descriptive summary
+    * Explain the expected behavior
+    * Explain the actual behavior
+    * Provide steps to reproduce the actual behavior
+
+### Making Changes
+
+* Fork the repository on GitHub
+* Create a topic branch from where you want to base your work.
+  * This is usually the master branch.
+  * To quickly create a topic branch based on master; `git branch fix/master/my_contribution master`
+  * Then checkout the new branch with `git checkout fix/master/my_contribution`.
+  * Please avoid working directly on the `master` branch.
+  * You may find the [hub suite of commands](https://github.com/defunkt/hub) helpful
+* Make sure you have added sufficient tests and documentation for your changes.
+  * Test functionality with RSpec; est features / UI with Capybara.
+* Run _all_ the tests to assure nothing else was accidentally broken.
+
+### Documenting Code
+
+* All new public methods, modules, and classes should include inline documentation in [YARD](http://yardoc.org/).
+  * Documentation should seek to answer the question "why does this code exist?"
+* Document private / protected methods as desired.
+* If you are working in a file with no prior documentation, do try to document as you gain understanding of the code.
+  * If you don't know exactly what a bit of code does, it is extra likely that it needs to be documented. Take a stab at it and ask for feedback in your pull request. You can use the 'blame' button on GitHub to identify the original developer of the code and @mention them in your comment.
+  * This work greatly increases the usability of the code base and supports the on-ramping of new committers.
+  * We will all be understanding of one another's time constraints in this area.
+* YARD examples:
+  * [Hydra::Works::RemoveGenericFile](https://github.com/projecthydra-labs/hydra-works/blob/master/lib/hydra/works/services/generic_work/remove_generic_file.rb)
+  * [ActiveTriples::LocalName::Minter](https://github.com/ActiveTriples/active_triples-local_name/blob/master/lib/active_triples/local_name/minter.rb)
+* [Getting started with YARD](http://www.rubydoc.info/gems/yard/file/docs/GettingStarted.md)
+
+### Committing changes
+
+* Make commits of logical units.
+  * Your commit should include a high level description of your work in HISTORY.textile
+* Check for unnecessary whitespace with `git diff --check` before committing.
+* Make sure your commit messages are [well formed](http://tbaggery.com/2008/04/19/a-note-about-git-commit-messages.html).
+* If you created an issue, you can close it by including "Closes #issue" in your commit message. See [Github's blog post for more details](https://github.com/blog/1386-closing-issues-via-commit-messages)
+
+```
+    Present tense short summary (50 characters or less)
+
+    More detailed description, if necessary. It should be wrapped to 72
+    characters. Try to be as descriptive as you can, even if you think that
+    the commit content is obvious, it may not be obvious to others. You
+    should add such description also if it's already present in bug tracker,
+    it should not be necessary to visit a webpage to check the history.
+
+    Include Closes #<issue-number> when relavent.
+
+    Description can have multiple paragraphs and you can use code examples
+    inside, just indent it with 4 spaces:
+
+        class PostsController
+          def index
+            respond_to do |wants|
+              wants.html { render 'index' }
+            end
+          end
+        end
+
+    You can also add bullet points:
+
+    - you can use dashes or asterisks
+
+    - also, try to indent next line of a point for readability, if it's too
+      long to fit in 72 characters
+```
+
+### Submitting Changes
+
+* Read the article ["Using Pull Requests"](https://help.github.com/articles/using-pull-requests) on GitHub.
+* Make sure your branch is up to date with its parent branch (i.e. master)
+  * `git checkout master`
+  * `git pull --rebase`
+  * `git checkout <your-branch>`
+  * `git rebase master`
+  * It is a good idea to run your tests again.
+* If you've made more than one commit take a moment to consider whether squashing commits together would help improve their logical grouping.
+  * [Detailed Walkthrough of One Pull Request per Commit](http://ndlib.github.io/practices/one-commit-per-pull-request/)
+  * `git rebase --interactive master` ([See Github help](https://help.github.com/articles/interactive-rebase))
+  * Squashing your branch's changes into one commit is "good form" and helps the person merging your request to see everything that is going on.
+* Push your changes to a topic branch in your fork of the repository.
+* Submit a pull request from your fork to the project.
+
+### Reviewing and Merging Changes
+
+We adopted [Github's Pull Request Review](https://help.github.com/articles/about-pull-request-reviews/) for our repositories.
+Common checks that may occur in our repositories:
+
+1. Travis CI - where our automated tests are running
+2. Hound CI - where we check for style violations
+3. Approval Required - Github enforces at least one person approve a pull request. Also, all reviewers that have chimed in must approve.
+4. CodeClimate - is our code remaining healthy (at least according to static code analysis)
+
+If one or more of the required checks failed (or are incomplete), the code should not be merged (and the UI will not allow it). If all of the checks have passed, then anyone on the project (including the pull request submitter) may merge the code.
+
+*Example: Carolyn submits a pull request, Justin reviews the pull request and approves. However, Justin is still waiting on other checks (Travis CI is usually the culprit), so he does not merge the pull request. Eventually, all of the checks pass. At this point, Carolyn or anyone else may merge the pull request.*
+
+#### Things to Consider When Reviewing
+
+First, the person contributing the code is putting themselves out there. Be mindful of what you say in a review.
+
+* Ask clarifying questions
+* State your understanding and expectations
+* Provide example code or alternate solutions, and explain why
+
+This is your chance for a mentoring moment of another developer. Take time to give an honest and thorough review of what has changed. Things to consider:
+
+  * Does the commit message explain what is going on?
+  * Does the code changes have tests? _Not all changes need new tests, some changes are refactors_
+  * Do new or changed methods, modules, and classes have documentation?
+  * Does the commit contain more than it should? Are two separate concerns being addressed in one commit?
+  * Does the description of the new/changed specs match your understanding of what the spec is doing?
+
+If you are uncertain, bring other contributors into the conversation by assigning them as a reviewer.
+
+# Additional Resources
+
+* [General GitHub documentation](http://help.github.com/)
+* [GitHub pull request documentation](http://help.github.com/send-pull-requests/)
+* [Pro Git](http://git-scm.com/book) is both a free and excellent book about Git.
+* [A Git Config for Contributing](http://ndlib.github.io/practices/my-typical-per-project-git-config/)

data/Gemfile

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+source 'https://rubygems.org'
+
+# Please see hyrax.gemspec for dependency information.
+gemspec
+
+group :development, :test do
+  gem "simplecov", require: false
+  gem 'coveralls', require: false
+  gem 'pry' unless ENV['CI']
+  gem 'pry-byebug' unless ENV['CI']
+end
+
+# BEGIN ENGINE_CART BLOCK
+# engine_cart: 0.10.0
+# engine_cart stanza: 0.10.0
+# the below comes from engine_cart, a gem used to test this Rails engine gem in the context of a Rails app.
+file = File.expand_path('Gemfile', ENV['ENGINE_CART_DESTINATION'] || ENV['RAILS_ROOT'] || File.expand_path('.internal_test_app', File.dirname(__FILE__)))
+if File.exist?(file)
+  begin
+    eval_gemfile file
+  rescue Bundler::GemfileError => e
+    Bundler.ui.warn '[EngineCart] Skipping Rails application dependencies:'
+    Bundler.ui.warn e.message
+  end
+else
+  Bundler.ui.warn "[EngineCart] Unable to find test application dependencies in #{file}, using placeholder dependencies"
+
+  if ENV['RAILS_VERSION']
+    if ENV['RAILS_VERSION'] == 'edge'
+      gem 'rails', github: 'rails/rails'
+      ENV['ENGINE_CART_RAILS_OPTIONS'] = '--edge --skip-turbolinks'
+    else
+      gem 'rails', ENV['RAILS_VERSION']
+    end
+  end
+
+  case ENV['RAILS_VERSION']
+  when /^4.2/
+    gem 'responders', '~> 2.0'
+    gem 'sass-rails', '>= 5.0'
+    gem 'coffee-rails', '~> 4.2.0'
+  when /^4.[01]/
+    gem 'sass-rails', '< 5.0'
+  end
+end
+# END ENGINE_CART BLOCK
+
+unless File.exist?(file)
+  eval_gemfile File.expand_path('spec/test_app_templates/Gemfile.extra', File.dirname(__FILE__))
+end

data/LICENSE

@@ -0,0 +1,15 @@
+##########################################################################
+# Copyright 2012 Penn State University
+# Additional copyright may be held by others, as reflected in the commit log
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.

data/README.md

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+![Logo](https://raw.githubusercontent.com/projecthydra-labs/hyrax/gh-pages/assets/images/hyrax_logo_horizontal_white_background.png)
+
+Code: [![Version](https://badge.fury.io/rb/hyrax.png)](http://badge.fury.io/rb/hyrax)
+[![Build Status](https://travis-ci.org/projecthydra-labs/hyrax.png?branch=master)](https://travis-ci.org/projecthydra-labs/hyrax)
+[![Coverage Status](https://coveralls.io/repos/github/projecthydra-labs/hyrax/badge.svg?branch=master)](https://coveralls.io/github/projecthydra-labs/hyrax?branch=master)
+[![Code Climate](https://codeclimate.com/github/projecthydra-labs/hyrax/badges/gpa.svg)](https://codeclimate.com/github/projecthydra-labs/hyrax)
+[![Dependency Update Status](https://gemnasium.com/projecthydra-labs/hyrax.png)](https://gemnasium.com/projecthydra-labs/hyrax)
+[![Dependency Maintenance Status](https://dependencyci.com/github/projecthydra-labs/hyrax/badge)](https://dependencyci.com/github/projecthydra-labs/hyrax)
+
+Docs: [![Documentation Status](https://inch-ci.org/github/projecthydra-labs/hyrax.svg?branch=master)](https://inch-ci.org/github/projecthydra-labs/hyrax)
+[![API Docs](http://img.shields.io/badge/API-docs-blue.svg)](http://rubydoc.info/gems/hyrax)
+[![Contribution Guidelines](http://img.shields.io/badge/CONTRIBUTING-Guidelines-blue.svg)](./.github/CONTRIBUTING.md)
+[![Apache 2.0 License](http://img.shields.io/badge/APACHE2-license-blue.svg)](./LICENSE)
+
+Jump in: [![Slack Status](http://slack.projecthydra.org/badge.svg)](http://slack.projecthydra.org/)
+[![Ready Tickets](https://badge.waffle.io/projecthydra-labs/hyrax.png?label=ready&milestone=1.0.0&title=Ready)](https://waffle.io/projecthydra-labs/hyrax?milestone=1.0.0)
+
+# Table of Contents
+
+  * [What is Hyrax?](#what-is-hyrax)
+    * [Feature list](#feature-list)
+  * [Help](#help)
+  * [Getting started](#getting-started)
+    * [Prerequisites](#prerequisites)
+      * [Characterization](#characterization)
+      * [Derivatives](#derivatives)
+    * [Environments](#environments)
+    * [Ruby](#ruby)
+  * [Creating a Hyrax\-based app](#creating-a-hyrax-based-app)
+    * [Redis](#redis)
+    * [Rails](#rails)
+    * [Message Queue](#message-queue)
+    * [Generate a primary work type](#generate-a-primary-work-type)
+    * [Start servers](#start-servers)
+  * [Managing a Hyrax\-based app](#managing-a-hyrax-based-app)
+  * [License](#license)
+  * [Contributing](#contributing)
+  * [Development](#development)
+  * [Release process](#release-process)
+  * [Acknowledgments](#acknowledgments)
+
+# What is Hyrax?
+
+Hyrax uses the full power of [Hydra](http://projecthydra.org/) and extends it to provide a user interface around common repository features and social features (see below). Hyrax offers self-deposit and proxy deposit workflows, and mediated deposit workflows are being developed in a community sprint running from September-December 2016. Hyrax delivers its rich and growing set of features via a modern, responsive user interface. It is implemented as a Rails engine, so it is meant to be added to existing Rails apps. Hyrax is the consolidation of Sufia and the CurationConcerns gems and behaves in much the same way.
+
+## Feature list
+
+Hyrax has many features. [Read more about what they are and how to turn them on](https://github.com/projecthydra/sufia/wiki/Feature-matrix). See the [Sufia Management Guide](https://github.com/projecthydra/sufia/wiki/Sufia-Management-Guide) to learn more.
+
+For non-technical documentation about Hyrax, see the Hyrax [documentation site](http://hyrax.projecthydra.org/).
+
+# Help
+
+If you have questions or need help, please email [the Hydra community tech list](mailto:hydra-tech@googlegroups.com) or stop by the #dev channel in [the Hydra community Slack team](https://wiki.duraspace.org/pages/viewpage.action?pageId=43910187#Getintouch!-Slack).
+
+# Getting started
+
+This document contains instructions specific to setting up an app with __Hyrax
+v0.0.1.alpha__. If you are looking for instructions on installing a different
+version, be sure to select the appropriate branch or tag from the drop-down
+menu above.
+
+Prerequisites are required for both Creating a Hyrax\-based app and Contributing new features to Hyrax.
+After installing the Prerequisites:
+ * If you would like to create a new application using Hyrax follow the instructions for [Creating a Hyrax\-based app](#creating-a-hyrax-based-app).
+ * If you would like to create new features for Hyrax follow the instructions for [Contributing](#contributing) and [Development](#development).
+
+## Prerequisites
+
+Hyrax 0.0.x requires the following software to work:
+
+1. [Solr](http://lucene.apache.org/solr/) version >= 5.x (tested up to 6.3.0)
+1. [Fedora Commons](http://www.fedora-commons.org/) digital repository version >= 4.5.1 (tested up to 4.7.0)
+1. A SQL RDBMS (MySQL, PostgreSQL), though **note** that SQLite will be used by default if you're looking to get up and running quickly
+1. [Redis](http://redis.io/), a key-value store
+1. [ImageMagick](http://www.imagemagick.org/) with JPEG-2000 support
+1. [FITS](#characterization) version 0.8.x (0.8.5 is known to be good)
+1. [LibreOffice](#derivatives)
+
+**NOTE: The [Sufia Development Guide](https://github.com/projecthydra/sufia/wiki/Sufia-Development-Guide) has instructions for installing Solr and Fedora in a development environment.**
+
+### Characterization
+
+1. Go to http://projects.iq.harvard.edu/fits/downloads and download a copy of FITS (see above to pick a known working version) & unpack it somewhere on your machine.
+1. Mark fits.sh as executable: `chmod a+x fits.sh`
+1. Run `fits.sh -h` from the command line and see a help message to ensure FITS is properly installed
+1. Give your Hyrax app access to FITS by:
+    1. Adding the full fits.sh path to your PATH (e.g., in your .bash\_profile), **OR**
+    1. Changing `config/initializers/hyrax.rb` to point to your FITS location:  `config.fits_path = "/<your full path>/fits.sh"`
+
+### Derivatives
+
+Install [LibreOffice](https://www.libreoffice.org/). If `which soffice` returns a path, you're done. Otherwise, add the full path to soffice to your PATH (in your `.bash_profile`, for instance). On OSX, soffice is **inside** LibreOffice.app. Your path may look like "/<your full path to>/LibreOffice.app/Contents/MacOS/"
+
+You may also require [ghostscript](http://www.ghostscript.com/) if it does not come with your compiled version LibreOffice. `brew install ghostscript` should resolve the dependency on a mac.
+
+**NOTE**: Derivatives are served from the filesystem in Hyrax.
+
+## Environments
+
+Note here that the following commands assume you're setting up Hyrax in a development environment (using the Rails built-in development environment). If you're setting up a production or production-like environment, you may wish to tell Rails that by prepending `RAILS_ENV=production` to the commands that follow, e.g., `rails`, `rake`, `bundle`, and so on.
+
+## Ruby
+
+First, you'll need a working Ruby installation. You can install this via your operating system's package manager -- you are likely to get farther with OSX, Linux, or UNIX than Windows but your mileage may vary -- but we recommend using a Ruby version manager such as [RVM](https://rvm.io/) or [rbenv](https://github.com/sstephenson/rbenv).
+
+We recommend either Ruby 2.3 or the latest 2.2 version.
+
+# Creating a Hyrax-based app
+
+## Redis
+
+[Redis](http://redis.io/) is a key-value store that Hyrax uses to provide activity streams on repository objects and users, and to prevent race conditions as a global mutex when modifying order-persisting objects.
+
+Starting up Redis will depend on your operating system, and may in fact already be started on your system. You may want to consult the [Redis documentation](http://redis.io/documentation) for help doing this.
+
+## Rails
+
+Generate a new Rails application. We recommend the latest Rails 5.0 release.
+
+```
+# If you don't already have Rails at your disposal...
+gem install rails -v 5.0.0.1
+rails new my_app -m https://raw.githubusercontent.com/projecthydra-labs/hyrax/master/template.rb
+```
+
+Generating a new Rails application using Hyrax's template above takes cares of a number of steps for you, including:
+
+* Adding Hyrax (and any of its dependencies) to your application `Gemfile`, to declare that Hyrax is a dependency of your application
+* Running `bundle install`, to install Hyrax and its dependencies
+* Running Hyrax's install generator, to add a number of files that Hyrax requires within your Rails app, including e.g. database migrations
+* Loading all of Hyrax's database migrations into your application's database
+* Loading Hyrax's default workflows into your application's database
+
+## Message Queue
+Many of the services performed by Hyrax are resource intensive, and therefore are well suited to running as background jobs that can be managed and executed by a Message Queue system. Examples include:
+* File ingest
+* Derivative generation
+* Characterization
+* Fixity
+* Solr indexing
+
+Hyrax implements these jobs using [ActiveJob](http://edgeguides.rubyonrails.org/active_job_basics.html), allowing you to choose the message queue system of your choice.
+
+For initial testing and development, it is recommended that you change the default ActiveJob adapter `:async` to `:inline`. This adapter will execute jobs immediately as they are received. This can be accomplished by adding the following to your `config/application.rb`
+
+```
+class Application < Rails::Application
+  # ...
+  config.active_job.queue_adapter = :inline
+  # ...
+end
+```
+
+**For production applications** you will want to setup a 3rd party system such as [Sidekiq](http://sidekiq.org/) or [Resque](https://github.com/resque/resque). The Sufia Development Guide has a detailed walkthrough of [installing and configuring Resque](https://github.com/projecthydra/sufia/wiki/Background-Workers-(Resque-in-Sufia-7). Initial Sidekiq instructions for ActiveJob are available on the [Sidekiq wiki](https://github.com/mperham/sidekiq/wiki/Active-Job).
+
+## Generate a primary work type
+
+Hyrax allows you to specify your work types by using a generator.
+
+Pass a (CamelCased) model name to Hyrax's work generator to get started, e.g.:
+
+```
+rails generate hyrax:work Work
+```
+
+or
+
+```
+rails generate hyrax:work MovingImage
+```
+
+## Start servers
+
+To test-drive your new Hyrax application in development mode, spin up the servers that Hyrax needs (Solr, Fedora, and Rails):
+
+```
+rake hydra:server
+```
+
+And now you should be able to browse to [localhost:3000](http://localhost:3000/) and see the application. Note that this web server is purely for development purposes; you will want to use a more fully featured [web server](#web-server) for production-like environments.
+
+# Managing a Hyrax-based app
+
+The [Sufia Management Guide](https://github.com/projecthydra/sufia/wiki/Sufia-Management-Guide) provides tips for how to manage, customize, and enhance your Hyrax application, including guidance specific to:
+
+* Production implementations
+* Configuration of background workers
+* Integration with e.g., Dropbox, Google Analytics, and Zotero
+* Audiovisual transcoding with `ffmpeg`
+* Setting up administrative users
+* Metadata customization
+
+# License
+
+Hyrax is available under [the Apache 2.0 license](LICENSE.md).
+
+# Contributing
+
+We'd love to accept your contributions.  Please see our guide to [contributing to Hyrax](./.github/CONTRIBUTING.md).
+
+If you'd like to help the development effort and you're not sure where to get started, you can always grab a ticket in the "Ready" column from our [Waffle board](https://waffle.io/projecthydra/hyrax). There are other ways to help, too.
+
+* [Contribute a user story](https://github.com/projecthydra-labs/hyrax/issues/new).
+* Help us improve [Hyrax's test coverage](https://coveralls.io/r/projecthydra-labs/hyrax) or [documentation coverage](https://inch-ci.org/github/projecthydra-labs/hyrax).
+* Refactor away [code smells](https://codeclimate.com/github/projecthydra-labs/hyrax).
+
+# Development
+
+The [Sufia Development Guide](https://github.com/projecthydra/sufia/wiki/Sufia-Development-Guide) is for people who want to modify Hyrax itself, not an application that uses Hyrax.
+
+# Release process
+
+See the [release management process](https://github.com/projecthydra/sufia/wiki/Release-management-process).
+
+# Acknowledgments
+
+This software has been developed by and is brought to you by the Hydra community.  Learn more at the
+[Project Hydra website](http://projecthydra.org/).
+
+![Project Hydra Logo](http://hyrax.projecthydra.org/assets/images/hydra_logo.png)