taverna-player 0.1.0

data/app/views/taverna_player/runs/_info.json.jbuilder

@@ -0,0 +1,2 @@
+json.extract! run, :id, :name, :workflow_id, :saved_state, :status_message,
+  :start_time, :finish_time

data/app/views/taverna_player/runs/_inputs.html.erb

@@ -0,0 +1,34 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-inputs">
+  <h2>Inputs</h2>
+
+  <% run.inputs.each do |input| %>
+    <p>
+      <b>Name:</b>
+      <%= input.display_name %>
+    </p>
+
+    <% if input.file.blank? %>
+    <p>
+      <b>Value:</b>
+      <%= input.value %>
+    </p>
+    <% else %>
+    <p>
+      <b>File:</b>
+      <%= link_to input.file_file_name, input.file.url %>
+    </p>
+    <% end %>
+  <% end%>
+</div>

data/app/views/taverna_player/runs/_inputs.json.jbuilder

@@ -0,0 +1,8 @@
+json.inputs inputs do |input|
+  json.name input.name
+  if input.file.blank?
+    json.value input.value
+  else
+    json.file_uri input.file.url
+  end
+end

data/app/views/taverna_player/runs/_interaction.html.erb

@@ -0,0 +1,68 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-interaction">
+  <% unless interaction.nil? %>
+
+    <%= javascript_tag do %>
+    var inputData = <%= raw(interaction.data) %>;
+
+    function registerCalls() {
+      pmrpc.register({
+        publicProcedureName : "reply",
+        procedure : function(status, results) {
+          interaction_reply('<%= "#{run_url(run)}/interaction/#{interaction.unique_id}" %>', status, results);
+          return "OK";
+        }
+      });
+
+      pmrpc.register({
+        publicProcedureName : "getParameterValue",
+        procedure : function(parameterName) {
+          return getParameterValue(parameterName);
+        }
+      });
+
+      pmrpc.register({
+        publicProcedureName : "getInputData",
+        procedure : function() {
+          return inputData;
+        }
+      });
+
+      pmrpc.register( {
+        publicProcedureName : "getWorkflowRunId",
+        procedure : function () {
+          return "<%= run.run_id %>";
+        }
+      });
+
+      pmrpc.register( {
+        publicProcedureName : "setTitle",
+        procedure : function(title) {
+          document.title = title;
+          return "OK";
+        }
+      });
+    }
+
+    jQuery(document).ready(
+      function() {
+        registerCalls();
+      }
+    );
+    <% end %>
+
+    <%= content_tag(:iframe, "", { :width => "100%", :height => "500px",
+      :src => interaction_redirect(interaction) }) %>
+  <% end %>
+</div>

data/app/views/taverna_player/runs/_outputs.html.erb

@@ -0,0 +1,41 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-outputs">
+  <% if run.outputs.size > 0 %>
+    <h2>Outputs</h2>
+
+    <%= link_to "Download All", run.results.url %>
+
+    <% run.outputs.each do |output| %>
+      <p>
+        <b>Name:</b>
+        <%= output.display_name %>
+      </p>
+
+      <p>
+        <b>Value:</b>
+        <%= "(#{output.metadata[:type]})" if output.depth == 0 %>
+        <%= link_to "Download", run_path(run) + "/download/output/#{output.name}" %>
+        <%= show_output(run, output) %>
+      </p>
+
+    <% end%>
+  <% end %>
+
+  <% unless run.log.blank? %>
+    <p>
+      <b>Log:</b>
+      <%= link_to "Taverna Server log", run.log.url %>
+    </p>
+  <% end %>
+</div>

data/app/views/taverna_player/runs/_poll.html.erb

@@ -0,0 +1,27 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-poll">
+  <%= javascript_tag do %>
+    var poll_interval = <%= TavernaPlayer.server_poll_interval * 2000 %>
+
+    jQuery(document).ready(
+      function() {
+        window.setTimeout("poll_run()", poll_interval)
+      }
+    );
+
+    function poll_run() {
+      jQuery.get("<%= reload %>", null, null, "script")
+    }
+  <% end %>
+</div>

data/app/views/taverna_player/runs/create.json.jbuilder

@@ -0,0 +1,3 @@
+json.partial! "info", :run => @run
+
+json.partial! "inputs", :inputs => @run.inputs

data/app/views/taverna_player/runs/embedded/_button.html.erb

@@ -0,0 +1,19 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-button">
+  <% if run.complete? %>
+    <%= link_to 'Restart', new_embedded_run_path(run) %>
+  <% else %>
+    <%= link_to "Cancel", cancel_run_path(run.id), :method => :put, :data => { confirm: "Are you sure?" } %>
+  <% end %>
+</div>

data/app/views/taverna_player/runs/embedded/_info.html.erb

@@ -0,0 +1,25 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-info">
+
+  <p>
+    <b>Name:</b>
+    <%= run.name %>
+  </p>
+
+  <p>
+    <b>Status message:</b>
+    <%= run.status_message %>
+  </p>
+
+</div>

data/app/views/taverna_player/runs/embedded/_inputs.html.erb

@@ -0,0 +1,32 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-inputs">
+  <h2>Inputs</h2>
+
+  <% run.inputs.each do |input| %>
+    <p>
+      <b>Name:</b>
+      <%= input.name %>
+    </p>
+
+    <p>
+      <b>Value:</b>
+      <%= input.value %>
+    </p>
+
+    <p>
+      <b>File:</b>
+      <%= link_to input.file_file_name, input.file.url %>
+    </p>
+  <% end%>
+</div>

data/app/views/taverna_player/runs/embedded/_outputs.html.erb

@@ -0,0 +1,32 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<div id="run-outputs">
+  <% if run.outputs.size > 0 %>
+    <h2>Outputs</h2>
+
+    <%= link_to "Download All", run.results.url %>
+
+    <% run.outputs.each do |output| %>
+      <p>
+        <b>Name:</b>
+        <%= output.name %>
+      </p>
+
+      <p>
+        <b>Value:</b>
+        <%= show_output(run, output) %>
+      </p>
+
+    <% end%>
+  <% end %>
+</div>

data/app/views/taverna_player/runs/embedded/new.html.erb

@@ -0,0 +1,58 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<% workflow_title = TavernaPlayer.workflow_proxy.title(@workflow) || "" %>
+<% workflow_inputs = TavernaPlayer.workflow_proxy.inputs(@workflow) %>
+
+<h1>Embedded Workflow: &quot;<%= workflow_title %>&quot;</h1>
+
+<%= form_for @run, :html => {:multipart => true} do |f| %>
+  <%= f.hidden_field :workflow_id %>
+  <%= f.hidden_field :embedded %>
+  <%= f.hidden_field :name, :value => "#{workflow_title} (embedded)" %>
+
+  <% workflow_inputs.each do |input| %>
+    <% input_param = params[input[:name].to_sym] %>
+    <% if input_param.nil? %>
+      <div>Input: <%= input[:name] %></div>
+
+      <% unless input[:description].blank? %>
+        <div>Description: <%= input[:description] %></div>
+      <% end %>
+
+      <% unless input[:example].blank? %>
+        <div>Example value: <%= input[:example] %></div>
+        <div>
+          The example value is automatically entered in the box below.
+          Click to edit or enter a new value directly or choose a file.
+        </div>
+      <% else %>
+        <div>Set this input by entering data directly or choosing a file.</div>
+      <% end %>
+    <% end %>
+
+    <%= f.fields_for :inputs, TavernaPlayer::RunPort::Input.new do |input_fields| %>
+      <%= input_fields.hidden_field :name, :value => input[:name] %>
+      <% if input_param.nil? %>
+        <%= input_fields.text_area :value, :value => input[:example], :rows => 3 %>
+        <%= input_fields.file_field :file %>
+      <% else %>
+        <%= input_fields.hidden_field :value, :value => input_param %>
+      <% end %>
+    <% end %>
+  <% end %>
+
+  <div><%= f.submit 'Start Run' %></div>
+<% end %>
+<% unless @run.embedded? %>
+  <%= link_to 'Cancel', :back %>
+<% end %>

data/app/views/taverna_player/runs/embedded/show.html.erb

@@ -0,0 +1,39 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<h1>Embedded Run</h1>
+
+<%= render "taverna_player/runs/embedded/info", :run => @run %>
+
+<%= render "taverna_player/runs/embedded/button", :run => @run %>
+
+<% if @run.inputs.size > 0 %>
+  <%= render "taverna_player/runs/embedded/inputs", :run => @run %>
+<% end %>
+
+<%
+  # Note that the base run/interaction partial is used here. You can still
+  # override it in the embedded directory if you wish but you will need to
+  # change the file name below AND in embedded/show.js.erb.
+%>
+<%= render "interaction", :run => @run, :interaction => @interaction %>
+
+<%= render "taverna_player/runs/embedded/outputs", :run => @run %>
+
+<%
+  # Note that the base run/poll partial is used here. You can still
+  # override it in the embedded directory if you wish but you will need to
+  # change the file name below AND in embedded/show.js.erb.
+%>
+<% unless @run.complete? %>
+  <%= render "poll", :reload => run_path(@run) %>
+<% end %>

data/app/views/taverna_player/runs/embedded/show.js.erb

@@ -0,0 +1,35 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+jQuery("#run-info").replaceWith('<%= escape_javascript(render("taverna_player/runs/embedded/info", :run => @run)) %>');
+
+jQuery("#run-button").replaceWith('<%= escape_javascript(render("taverna_player/runs/embedded/button", :run => @run)) %>');
+
+<%
+  # Note that the base run/interaction partial is used here. You can still
+  # override it in the embedded directory if you wish but you will need to
+  # change the file name below AND in embedded/show.html.erb.
+%>
+<% if @interaction.nil? || @new_interaction %>
+  jQuery("#run-interaction").replaceWith('<%= escape_javascript(render("interaction", :run => @run, :interaction => @interaction)) %>');
+<% end %>
+
+<% if @run.complete? %>
+  jQuery("#run-outputs").replaceWith('<%= escape_javascript(render("taverna_player/runs/embedded/outputs", :run => @run)) %>');
+<% else %>
+  <%
+    # Note that the base run/poll partial is used here. You can still
+    # override it in the embedded directory if you wish but you will need to
+    # change the file name below AND in embedded/show.html.erb.
+  %>
+  jQuery("#run-poll").replaceWith('<%= escape_javascript(render("poll", :reload => run_path(@run))) %>');
+<% end %>

data/app/views/taverna_player/runs/index.html.erb

@@ -0,0 +1,40 @@
+<%
+  # Copyright (c) 2013 The University of Manchester, UK.
+  #
+  # BSD Licenced. See LICENCE.rdoc for details.
+  #
+  # Taverna Player was developed in the BioVeL project, funded by the European
+  # Commission 7th Framework Programme (FP7), through grant agreement
+  # number 283359.
+  #
+  # Author: Robert Haines
+%>
+
+<h1>Runs</h1>
+
+<table>
+  <tr>
+    <th>Run</th>
+    <th>Name</th>
+    <th>Id on Taverna Server</th>
+    <th>State</th>
+    <th>Create time</th>
+    <th>Start time</th>
+    <th>Finish time</th>
+    <th colspan="2">Actions</th>
+  </tr>
+
+<% @runs.each do |run| %>
+  <tr>
+    <td><%= run.id %></td>
+    <td><%= run.name %></td>
+    <td><%= run.run_id %></td>
+    <td><%= run.state %></td>
+    <td><%= run.create_time %></td>
+    <td><%= run.start_time %></td>
+    <td><%= run.finish_time %></td>
+    <td><%= link_to 'Show', run %></td>
+    <td><%= render "button", :run => run %></td>
+  </tr>
+<% end %>
+</table>