taverna-player 0.1.0

data/test/dummy/db/migrate/20130811212709_change_taverna_player_runs_state_column.taverna_player.rb

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+# This migration comes from taverna_player (originally 20130811211725)
+class ChangeTavernaPlayerRunsStateColumn < ActiveRecord::Migration
+  def change
+    rename_column :taverna_player_runs, :state, :saved_state
+  end
+end

data/test/dummy/db/migrate/20130812161152_add_name_to_taverna_player_runs.taverna_player.rb

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+# This migration comes from taverna_player (originally 20130812155839)
+class AddNameToTavernaPlayerRuns < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_runs, :name, :string, :default => "None"
+  end
+end

data/test/dummy/db/migrate/20130918155525_create_taverna_player_service_credentials.taverna_player.rb

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+# This migration comes from taverna_player (originally 20130918135348)
+class CreateTavernaPlayerServiceCredentials < ActiveRecord::Migration
+  def change
+    create_table :taverna_player_service_credentials do |t|
+      t.string :uri, :null => false
+      t.string :name
+      t.text :description
+      t.string :login
+      t.string :password
+
+      t.timestamps
+    end
+
+    add_index :taverna_player_service_credentials, :uri
+  end
+end

data/test/dummy/db/migrate/20130919155202_add_displayed_to_taverna_player_interactions.taverna_player.rb

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+# This migration comes from taverna_player (originally 20130919154200)
+class AddDisplayedToTavernaPlayerInteractions < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_interactions, :displayed, :boolean, :default => false
+  end
+end

data/test/dummy/db/migrate/20131007153659_add_job_ref_to_taverna_player_runs.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131007153209)
+class AddJobRefToTavernaPlayerRuns < ActiveRecord::Migration
+  def up
+    change_table :taverna_player_runs do |t|
+      t.references :delayed_job
+    end
+  end
+
+  def down
+    change_table :taverna_player_runs do |t|
+      t.remove :delayed_job_id
+    end
+  end
+end

data/test/dummy/db/migrate/20131016123941_add_reply_caching_to_taverna_player_interactions.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131010094537)
+class AddReplyCachingToTavernaPlayerInteractions < ActiveRecord::Migration
+  def up
+    remove_column :taverna_player_interactions, :uri
+    add_column :taverna_player_interactions, :unique_id, :string
+    add_column :taverna_player_interactions, :page, :text
+    add_column :taverna_player_interactions, :feed_reply, :string
+    add_column :taverna_player_interactions, :output_value, :text, :limit => 16777215
+    add_index :taverna_player_interactions, :unique_id
+  end
+
+  def down
+    remove_index :taverna_player_interactions, :unique_id
+    remove_column :taverna_player_interactions, :output_value
+    remove_column :taverna_player_interactions, :feed_reply
+    remove_column :taverna_player_interactions, :page
+    remove_column :taverna_player_interactions, :unique_id
+    add_column :taverna_player_interactions, :uri, :string
+  end
+end

data/test/dummy/db/migrate/20131017141614_add_failure_message_to_taverna_player_run.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131017141514)
+class AddFailureMessageToTavernaPlayerRun < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_runs, :failure_message, :text
+  end
+end

data/test/dummy/db/migrate/20131018153316_add_serial_number_to_taverna_player_interactions.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131018152940)
+class AddSerialNumberToTavernaPlayerInteractions < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_interactions, :serial, :string
+  end
+end

data/test/dummy/db/migrate/20131018164614_add_parent_run_id_to_taverna_player_runs.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131018160715)
+class AddParentRunIdToTavernaPlayerRuns < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_runs, :parent_id, :integer
+  end
+end

data/test/dummy/db/migrate/20131102114343_add_page_uri_to_taverna_player_interaction.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131102113933)
+class AddPageUriToTavernaPlayerInteraction < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_interactions, :page_uri, :string
+  end
+end

data/test/dummy/db/migrate/20131105115724_remove_proxy_from_taverna_player_runs.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131105115218)
+class RemoveProxyFromTavernaPlayerRuns < ActiveRecord::Migration
+  def up
+    remove_column :taverna_player_runs, :proxy_notifications
+    remove_column :taverna_player_runs, :proxy_interactions
+  end
+
+  def down
+    add_column :taverna_player_runs, :proxy_interactions, :string
+    add_column :taverna_player_runs, :proxy_notifications, :string
+  end
+end

data/test/dummy/db/migrate/20131105142417_change_taverna_player_interactions_output_value_column_name.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131105141934)
+class ChangeTavernaPlayerInteractionsOutputValueColumnName < ActiveRecord::Migration
+  def change
+    rename_column :taverna_player_interactions, :output_value, :data
+  end
+end

data/test/dummy/db/migrate/20131112165815_add_user_to_taverna_player_run.taverna_player.rb

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+# This migration comes from taverna_player (originally 20131112165520)
+class AddUserToTavernaPlayerRun < ActiveRecord::Migration
+  def change
+    add_column :taverna_player_runs, :user_id, :integer
+  end
+end

data/test/dummy/db/migrate/20131114130937_create_users.rb

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+class CreateUsers < ActiveRecord::Migration
+  def change
+    create_table :users do |t|
+      t.string :name
+      t.string :email
+
+      t.timestamps
+    end
+  end
+end

data/test/dummy/db/schema.rb

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+# encoding: UTF-8
+# This file is auto-generated from the current state of the database. Instead
+# of editing this file, please use the migrations feature of Active Record to
+# incrementally modify your database, and then regenerate this schema definition.
+#
+# Note that this schema.rb definition is the authoritative source for your
+# database schema. If you need to create the application database on another
+# system, you should be using db:schema:load, not running all the migrations
+# from scratch. The latter is a flawed and unsustainable approach (the more migrations
+# you'll amass, the slower it'll run and the greater likelihood for issues).
+#
+# It's strongly recommended to check this file into your version control system.
+
+ActiveRecord::Schema.define(:version => 20131114130937) do
+
+  create_table "delayed_jobs", :force => true do |t|
+    t.integer  "priority",   :default => 0
+    t.integer  "attempts",   :default => 0
+    t.text     "handler"
+    t.text     "last_error"
+    t.datetime "run_at"
+    t.datetime "locked_at"
+    t.datetime "failed_at"
+    t.string   "locked_by"
+    t.string   "queue"
+    t.datetime "created_at",                :null => false
+    t.datetime "updated_at",                :null => false
+  end
+
+  add_index "delayed_jobs", ["priority", "run_at"], :name => "delayed_jobs_priority"
+
+  create_table "taverna_player_interactions", :force => true do |t|
+    t.boolean  "replied",                        :default => false
+    t.integer  "run_id"
+    t.datetime "created_at",                                        :null => false
+    t.datetime "updated_at",                                        :null => false
+    t.boolean  "displayed",                      :default => false
+    t.string   "unique_id"
+    t.text     "page"
+    t.string   "feed_reply"
+    t.text     "data",       :limit => 16777215
+    t.string   "serial"
+    t.string   "page_uri"
+  end
+
+  add_index "taverna_player_interactions", ["run_id"], :name => "index_taverna_player_interactions_on_run_id"
+  add_index "taverna_player_interactions", ["unique_id"], :name => "index_taverna_player_interactions_on_unique_id"
+
+  create_table "taverna_player_run_ports", :force => true do |t|
+    t.string   "name"
+    t.string   "value"
+    t.string   "port_type"
+    t.integer  "run_id"
+    t.datetime "created_at",                       :null => false
+    t.datetime "updated_at",                       :null => false
+    t.string   "file_file_name"
+    t.string   "file_content_type"
+    t.integer  "file_file_size"
+    t.datetime "file_updated_at"
+    t.integer  "depth",             :default => 0
+    t.text     "metadata"
+  end
+
+  add_index "taverna_player_run_ports", ["run_id"], :name => "index_taverna_player_run_ports_on_run_id"
+
+  create_table "taverna_player_runs", :force => true do |t|
+    t.string   "run_id"
+    t.string   "saved_state",          :default => "pending", :null => false
+    t.datetime "create_time"
+    t.datetime "start_time"
+    t.datetime "finish_time"
+    t.integer  "workflow_id",                                 :null => false
+    t.datetime "created_at",                                  :null => false
+    t.datetime "updated_at",                                  :null => false
+    t.string   "status_message"
+    t.string   "results_file_name"
+    t.string   "results_content_type"
+    t.integer  "results_file_size"
+    t.datetime "results_updated_at"
+    t.boolean  "embedded",             :default => false
+    t.boolean  "stop",                 :default => false
+    t.string   "log_file_name"
+    t.string   "log_content_type"
+    t.integer  "log_file_size"
+    t.datetime "log_updated_at"
+    t.string   "name",                 :default => "None"
+    t.integer  "delayed_job_id"
+    t.text     "failure_message"
+    t.integer  "parent_id"
+    t.integer  "user_id"
+  end
+
+  add_index "taverna_player_runs", ["run_id"], :name => "index_taverna_player_runs_on_run_id"
+
+  create_table "taverna_player_service_credentials", :force => true do |t|
+    t.string   "uri",         :null => false
+    t.string   "name"
+    t.text     "description"
+    t.string   "login"
+    t.string   "password"
+    t.datetime "created_at",  :null => false
+    t.datetime "updated_at",  :null => false
+  end
+
+  add_index "taverna_player_service_credentials", ["uri"], :name => "index_taverna_player_service_credentials_on_uri"
+
+  create_table "users", :force => true do |t|
+    t.string   "name"
+    t.string   "email"
+    t.datetime "created_at", :null => false
+    t.datetime "updated_at", :null => false
+  end
+
+  create_table "workflows", :force => true do |t|
+    t.string   "title"
+    t.string   "author"
+    t.text     "description"
+    t.string   "file"
+    t.datetime "created_at",  :null => false
+    t.datetime "updated_at",  :null => false
+  end
+
+end

data/test/dummy/lib/callbacks.rb

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+#------------------------------------------------------------------------------
+# Copyright (c) 2013 The University of Manchester, UK.
+#
+# BSD Licenced. See LICENCE.rdoc for details.
+#
+# Taverna Player was developed in the BioVeL project, funded by the European
+# Commission 7th Framework Programme (FP7), through grant agreement
+# number 283359.
+#
+# Author: Robert Haines
+#------------------------------------------------------------------------------
+
+def player_pre_run_callback(run)
+  w = Workflow.find(run.workflow_id)
+  puts "Pre-run callback called for run '#{run.name}' of workflow '#{w.id}'"
+end
+
+def player_post_run_callback(run)
+  w = Workflow.find(run.workflow_id)
+  puts "Post-run callback called for run '#{run.name}' of workflow '#{w.id}'"
+end
+
+def player_run_cancelled_callback(run)
+  w = Workflow.find(run.workflow_id)
+  puts "Run-cancelled callback called for run '#{run.name}' of workflow '#{w.id}'"
+end
+
+def player_run_failed_callback(run)
+  w = Workflow.find(run.workflow_id)
+  puts "Run-failed callback called for run '#{run.name}' of workflow '#{w.id}'"
+end
+
+def user_one
+  User.find(1)
+end

data/test/dummy/public/404.html

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+<!DOCTYPE html>
+<html>
+<head>
+  <title>The page you were looking for doesn't exist (404)</title>
+  <style type="text/css">
+    body { background-color: #fff; color: #666; text-align: center; font-family: arial, sans-serif; }
+    div.dialog {
+      width: 25em;
+      padding: 0 4em;
+      margin: 4em auto 0 auto;
+      border: 1px solid #ccc;
+      border-right-color: #999;
+      border-bottom-color: #999;
+    }
+    h1 { font-size: 100%; color: #f00; line-height: 1.5em; }
+  </style>
+</head>
+
+<body>
+  <!-- This file lives in public/404.html -->
+  <div class="dialog">
+    <h1>The page you were looking for doesn't exist.</h1>
+    <p>You may have mistyped the address or the page may have moved.</p>
+  </div>
+</body>
+</html>

data/test/dummy/public/422.html

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+<!DOCTYPE html>
+<html>
+<head>
+  <title>The change you wanted was rejected (422)</title>
+  <style type="text/css">
+    body { background-color: #fff; color: #666; text-align: center; font-family: arial, sans-serif; }
+    div.dialog {
+      width: 25em;
+      padding: 0 4em;
+      margin: 4em auto 0 auto;
+      border: 1px solid #ccc;
+      border-right-color: #999;
+      border-bottom-color: #999;
+    }
+    h1 { font-size: 100%; color: #f00; line-height: 1.5em; }
+  </style>
+</head>
+
+<body>
+  <!-- This file lives in public/422.html -->
+  <div class="dialog">
+    <h1>The change you wanted was rejected.</h1>
+    <p>Maybe you tried to change something you didn't have access to.</p>
+  </div>
+</body>
+</html>

data/test/dummy/public/500.html

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+<!DOCTYPE html>
+<html>
+<head>
+  <title>We're sorry, but something went wrong (500)</title>
+  <style type="text/css">
+    body { background-color: #fff; color: #666; text-align: center; font-family: arial, sans-serif; }
+    div.dialog {
+      width: 25em;
+      padding: 0 4em;
+      margin: 4em auto 0 auto;
+      border: 1px solid #ccc;
+      border-right-color: #999;
+      border-bottom-color: #999;
+    }
+    h1 { font-size: 100%; color: #f00; line-height: 1.5em; }
+  </style>
+</head>
+
+<body>
+  <!-- This file lives in public/500.html -->
+  <div class="dialog">
+    <h1>We're sorry, but something went wrong.</h1>
+  </div>
+</body>
+</html>

data/test/dummy/script/delayed_job

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+#!/usr/bin/env ruby
+
+require File.expand_path(File.join(File.dirname(__FILE__), '..', 'config', 'environment'))
+require 'delayed/command'
+Delayed::Command.new(ARGV).daemonize

data/test/dummy/script/rails

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+#!/usr/bin/env ruby
+# This command will automatically be run when you run "rails" with Rails 3 gems installed from the root of your application.
+
+APP_PATH = File.expand_path('../../config/application',  __FILE__)
+require File.expand_path('../../config/boot',  __FILE__)
+require 'rails/commands'

data/test/dummy/test/functional/home_controller_test.rb

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+#------------------------------------------------------------------------------
+# Copyright (c) 2013 The University of Manchester, UK.
+#
+# BSD Licenced. See LICENCE.rdoc for details.
+#
+# Taverna Player was developed in the BioVeL project, funded by the European
+# Commission 7th Framework Programme (FP7), through grant agreement
+# number 283359.
+#
+# Author: Robert Haines
+#------------------------------------------------------------------------------
+
+require 'test_helper'
+
+class HomeControllerTest < ActionController::TestCase
+  test "should get index" do
+    get :index
+    assert_response :success
+
+    # Check the home page iframe URI is not escaped. Can only test this here
+    # because the helpers are not escaped unless called from within a view.
+    assert_select "iframe" do
+      assert_select "[src=?]", /^(?!.*&amp;).*$/, "",
+        "iframe URI contains &amp;"
+    end
+  end
+
+end

data/test/dummy/test/functional/workflows_controller_test.rb

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+#------------------------------------------------------------------------------
+# Copyright (c) 2013 The University of Manchester, UK.
+#
+# BSD Licenced. See LICENCE.rdoc for details.
+#
+# Taverna Player was developed in the BioVeL project, funded by the European
+# Commission 7th Framework Programme (FP7), through grant agreement
+# number 283359.
+#
+# Author: Robert Haines
+#------------------------------------------------------------------------------
+
+require 'test_helper'
+
+class WorkflowsControllerTest < ActionController::TestCase
+  test "should get index" do
+    get :index
+    assert_response :success
+  end
+
+end