t2-web 0.1.9 → 0.2.0

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Files changed (88) hide show
  1. data/Gemfile +3 -0
  2. data/Rakefile +4 -3
  3. data/bin/t2-web +0 -0
  4. data/bin/t2_webapp.rb +45 -10
  5. data/public/t2web/scripts/results.js +6 -2
  6. data/public/t2web/tmp/outputs/049c41c6-77ed-457b-a342-1a779055156a/UniProtID +166 -0
  7. data/public/t2web/tmp/outputs/049c41c6-77ed-457b-a342-1a779055156a/ValidatedProtein +8 -0
  8. data/public/t2web/tmp/outputs/146d17ee-9418-4b59-89db-d9d0b9b8986d/Document_ID +1 -0
  9. data/public/t2web/tmp/outputs/146d17ee-9418-4b59-89db-d9d0b9b8986d/Document_title +1 -0
  10. data/public/t2web/tmp/outputs/2dbcdad5-5344-42c6-b75d-0786bb64ab21/UniProtID +185 -0
  11. data/public/t2web/tmp/outputs/2dbcdad5-5344-42c6-b75d-0786bb64ab21/ValidatedProtein +10 -0
  12. data/public/t2web/tmp/outputs/32cc09db-2097-4f3d-af66-4c259e1b6ca4/c.error +5 -0
  13. data/public/t2web/tmp/outputs/37ddef2f-dc86-455b-83dd-77db719a0f43/UniProtID +185 -0
  14. data/public/t2web/tmp/outputs/37ddef2f-dc86-455b-83dd-77db719a0f43/ValidatedProtein +10 -0
  15. data/public/t2web/tmp/outputs/38e16f78-651d-4460-ac17-21fa286316f7/UniProtID +185 -0
  16. data/public/t2web/tmp/outputs/38e16f78-651d-4460-ac17-21fa286316f7/ValidatedProtein +10 -0
  17. data/public/t2web/tmp/outputs/39b05ef7-9d44-4985-b91f-8bb364318f08/DocumentID +1 -0
  18. data/public/t2web/tmp/outputs/39b05ef7-9d44-4985-b91f-8bb364318f08/DocumentTitle +1 -0
  19. data/public/t2web/tmp/outputs/3d98e130-2397-4685-a42a-7695ec31e167/UniProtID +185 -0
  20. data/public/t2web/tmp/outputs/3d98e130-2397-4685-a42a-7695ec31e167/ValidatedProtein +10 -0
  21. data/public/t2web/tmp/outputs/42d7d982-dee2-4d10-9f99-0739e5f69128/UniProtID +185 -0
  22. data/public/t2web/tmp/outputs/42d7d982-dee2-4d10-9f99-0739e5f69128/ValidatedProtein +10 -0
  23. data/public/t2web/tmp/outputs/5f548064-62e9-4929-8c19-bc3becd0085a/DocumentID +1 -0
  24. data/public/t2web/tmp/outputs/5f548064-62e9-4929-8c19-bc3becd0085a/DocumentTitle +1 -0
  25. data/public/t2web/tmp/outputs/64180866-65fb-4c18-8117-8433809858e9/UniProtID +153 -0
  26. data/public/t2web/tmp/outputs/64180866-65fb-4c18-8117-8433809858e9/ValidatedProtein +10 -0
  27. data/public/t2web/tmp/outputs/69214823-0f5f-4a0c-8a96-ae209b383689/c.error +5 -0
  28. data/public/t2web/tmp/outputs/6cc7b825-5acb-487f-b0cc-effd291d7ca8/UniProtID +185 -0
  29. data/public/t2web/tmp/outputs/6cc7b825-5acb-487f-b0cc-effd291d7ca8/ValidatedProtein +10 -0
  30. data/public/t2web/tmp/outputs/6f1e0b58-6ab6-4ab8-91bd-8b765c1b0114/UniProtID +185 -0
  31. data/public/t2web/tmp/outputs/6f1e0b58-6ab6-4ab8-91bd-8b765c1b0114/ValidatedProtein +10 -0
  32. data/public/t2web/tmp/outputs/758c71b6-41fb-4463-8cc9-21aa556385d1/c +1 -0
  33. data/public/t2web/tmp/outputs/78e61965-6f39-483d-8af7-7be640a3f33b/c +1 -0
  34. data/public/t2web/tmp/outputs/7963e714-68cd-44f7-8c52-e2352bef809d/DocumentID +1 -0
  35. data/public/t2web/tmp/outputs/7963e714-68cd-44f7-8c52-e2352bef809d/DocumentTitle +1 -0
  36. data/public/t2web/tmp/outputs/7e42db30-3bac-4fe9-b253-66cd35e6c7f9/c.error +5 -0
  37. data/public/t2web/tmp/outputs/7e731896-5b22-45eb-8ce0-cdae3d66ffe4/UniProtID +185 -0
  38. data/public/t2web/tmp/outputs/7e731896-5b22-45eb-8ce0-cdae3d66ffe4/ValidatedProtein +10 -0
  39. data/public/t2web/tmp/outputs/81835a40-d9e5-4ab2-a3c9-c39bee1cd391/UniProtID +185 -0
  40. data/public/t2web/tmp/outputs/81835a40-d9e5-4ab2-a3c9-c39bee1cd391/ValidatedProtein +10 -0
  41. data/public/t2web/tmp/outputs/8353d6f6-8e5f-4e5d-9d65-d303330b31ef/c +1 -0
  42. data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Explained_concept_ID +50 -0
  43. data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Explained_concept_name +50 -0
  44. data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Match_concept_ID +5 -0
  45. data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Matched_disease_names +5 -0
  46. data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Query_concept_ID +5 -0
  47. data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Summed_Similarity_score +5 -0
  48. data/public/t2web/tmp/outputs/881e2b9f-02b7-43ca-8e1f-db3f019e1b50/c +1 -0
  49. data/public/t2web/tmp/outputs/88f3b8a9-f544-4a5d-9d2d-bbb98b802a46/DocumentID +1 -0
  50. data/public/t2web/tmp/outputs/88f3b8a9-f544-4a5d-9d2d-bbb98b802a46/DocumentTitle +1 -0
  51. data/public/t2web/tmp/outputs/8d346bd2-a96d-4f33-8f23-2b0e53389dbe/UniProtID +185 -0
  52. data/public/t2web/tmp/outputs/8d346bd2-a96d-4f33-8f23-2b0e53389dbe/ValidatedProtein +10 -0
  53. data/public/t2web/tmp/outputs/8f6e128f-4f06-47d9-a507-7af81da097e7/UniProtID +185 -0
  54. data/public/t2web/tmp/outputs/8f6e128f-4f06-47d9-a507-7af81da097e7/ValidatedProtein +10 -0
  55. data/public/t2web/tmp/outputs/99581b3a-a73a-469f-8377-43d7bf804bfa/Document_ID +1 -0
  56. data/public/t2web/tmp/outputs/99581b3a-a73a-469f-8377-43d7bf804bfa/Document_title +1 -0
  57. data/public/t2web/tmp/outputs/9b72ed6c-ab8d-443e-a2d7-28aa5ac901e7/UniProtID +185 -0
  58. data/public/t2web/tmp/outputs/9b72ed6c-ab8d-443e-a2d7-28aa5ac901e7/ValidatedProtein +10 -0
  59. data/public/t2web/tmp/outputs/9e76bfc2-4ecb-4c9c-9446-eb4e462a9002/Pathway +1 -0
  60. data/public/t2web/tmp/outputs/9e76bfc2-4ecb-4c9c-9446-eb4e462a9002/geneList +184 -0
  61. data/public/t2web/tmp/outputs/9e76bfc2-4ecb-4c9c-9446-eb4e462a9002/gene_description +184 -0
  62. data/public/t2web/tmp/outputs/a7c012b1-4316-4780-8cb2-82f270e0e8fb/c.error +5 -0
  63. data/public/t2web/tmp/outputs/af874bf7-fdf2-4aaa-a2bb-95e1d2217942/UniProtID +185 -0
  64. data/public/t2web/tmp/outputs/af874bf7-fdf2-4aaa-a2bb-95e1d2217942/ValidatedProtein +10 -0
  65. data/public/t2web/tmp/outputs/bda0e4c4-1703-4d96-b47d-a900e40d6545/UniProtID +185 -0
  66. data/public/t2web/tmp/outputs/bda0e4c4-1703-4d96-b47d-a900e40d6545/ValidatedProtein +10 -0
  67. data/public/t2web/tmp/outputs/c48f4ca9-b683-4108-b89e-dffa508dd288/UniProtID +185 -0
  68. data/public/t2web/tmp/outputs/c48f4ca9-b683-4108-b89e-dffa508dd288/ValidatedProtein +10 -0
  69. data/public/t2web/tmp/outputs/c524df09-3e29-4cdc-8c23-9f7db851ac3c/DocumentID +1 -0
  70. data/public/t2web/tmp/outputs/c524df09-3e29-4cdc-8c23-9f7db851ac3c/DocumentTitle +1 -0
  71. data/public/t2web/tmp/outputs/c6244429-b042-45c9-98f3-ea54fc38f2d6/UniProtID +185 -0
  72. data/public/t2web/tmp/outputs/c6244429-b042-45c9-98f3-ea54fc38f2d6/ValidatedProtein +10 -0
  73. data/public/t2web/tmp/outputs/cbbe70ea-0fa9-422e-9d9a-568f490b9176/UniProtID +185 -0
  74. data/public/t2web/tmp/outputs/cbbe70ea-0fa9-422e-9d9a-568f490b9176/ValidatedProtein +10 -0
  75. data/public/t2web/tmp/outputs/ccf5fb69-9d43-47df-9eb8-88127952a4dd/UniProtID +185 -0
  76. data/public/t2web/tmp/outputs/ccf5fb69-9d43-47df-9eb8-88127952a4dd/ValidatedProtein +10 -0
  77. data/public/t2web/tmp/outputs/d510bb4c-1e20-4fd6-9183-b7428d9fc487/UniProtID +185 -0
  78. data/public/t2web/tmp/outputs/d510bb4c-1e20-4fd6-9183-b7428d9fc487/ValidatedProtein +10 -0
  79. data/public/t2web/tmp/outputs/db765c29-3800-45f8-9c4c-243668820ecc/c +1 -0
  80. data/public/t2web/tmp/outputs/e612877e-f9a4-46db-a790-0a97c91fc939/c +1 -0
  81. data/public/t2web/tmp/outputs/f4e529bb-7553-485f-9efd-37ab3f9efd76/UniProtID +185 -0
  82. data/public/t2web/tmp/outputs/f4e529bb-7553-485f-9efd-37ab3f9efd76/ValidatedProtein +10 -0
  83. data/public/t2web/tmp/outputs/f7ce53cc-1200-4552-8d92-d8c6d3247efd/c +1 -0
  84. data/public/t2web/tmp/outputs/f7fdb125-44bb-444f-957c-3e12246d6e57/DocumentID +1 -0
  85. data/public/t2web/tmp/outputs/f7fdb125-44bb-444f-957c-3e12246d6e57/DocumentTitle +1 -0
  86. data/views/form.haml +9 -9
  87. data/views/results.haml +6 -4
  88. metadata +348 -245
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+ <b>GnT-III</b>
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+ GnT-III
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+ GnT-III
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+ GnT-III
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+ <b>gamma-actin</b>
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+ <b>APP</b>
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+ APP
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+ APP
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+ <b>UPS</b>
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+ <b>TFE</b>
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+ <b>L-Glutamine-induced apoptosis in microglia is mediated by mitochondrial dysfunction.</b>
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+ <b>P70386</b>
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@@ -0,0 +1,10 @@
1
+ <b>GnT-III</b>
2
+ GnT-III
3
+ GnT-III
4
+ GnT-III
5
+ <b>gamma-actin</b>
6
+ <b>APP</b>
7
+ APP
8
+ APP
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+ <b>UPS</b>
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+ <b>TFE</b>
@@ -0,0 +1 @@
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+ <b>path:hsa05016 Huntington's disease - Homo sapiens (human)</b>
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+ <b>100532726</b>
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@@ -0,0 +1,184 @@
1
+ <b>100532726 NDUFC2-KCTD14; NDUFC2-KCTD14 readthrough; K03968 NADH dehydrogenase (ubiquinone) 1 subcomplex unknown 2 [EC</b>
2
+ 10105 PPIF, CYP3, Cyp-D; peptidylprolyl isomerase F (EC
3
+ 10126 DNAL4, PIG27; dynein, axonemal, light chain 4; K10412 dynein light chain 4, axonemal
4
+ 10476 ATP5H, ATPQ; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d (EC
5
+ 10488 CREB3, LUMAN, LZIP; cAMP responsive element binding protein 3; K09048 cyclic AMP-responsive element-binding protein 3
6
+ 10540 DCTN2, DCTN50, DYNAMITIN, RBP50; dynactin 2 (p50); K10424 dynactin 2
7
+ 10891 PPARGC1A, LEM6, PGC-1(alpha), PGC-1v, PGC1, PGC1A, PPARGC1; peroxisome proliferator-activated receptor gamma, coactivator 1 alpha; K07202 peroxisome proliferative activated receptor, gamma, coactivator 1, alpha
8
+ 10975 UQCR11, 0710008D09Rik, QCR10, UQCR; ubiquinol-cytochrome c reductase, complex III subunit XI; K00420 ubiquinol-cytochrome c reductase subunit 10
9
+ 1173 AP2M1, AP50, CLAPM1, mu2; adaptor-related protein complex 2, mu 1 subunit; K11826 AP-2 complex subunit mu-1
10
+ 1175 AP2S1, AP17, AP17-DELTA, CLAPS2; adaptor-related protein complex 2, sigma 1 subunit; K11827 AP-2 complex subunit sigma-1
11
+ 1211 CLTA, LCA; clathrin, light chain A; K04644 clathrin light chain A
12
+ 1212 CLTB, LCB; clathrin, light chain B; K04645 clathrin light chain B
13
+ 1213 CLTC, CHC, CHC17, CLH-17, CLTCL2, Hc; clathrin, heavy chain (Hc); K04646 clathrin heavy chain
14
+ 125965 COX6B2, COXVIB2, CT59; cytochrome c oxidase subunit VIb polypeptide 2 (testis); K02267 cytochrome c oxidase subunit 6b
15
+ 126328 NDUFA11, B14.7, CI-B14.7; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa (EC
16
+ 1327 COX4I1, COX4, COX4-1, COXIV; cytochrome c oxidase subunit IV isoform 1 (EC
17
+ 1329 COX5B, COXVB; cytochrome c oxidase subunit Vb (EC
18
+ 1337 COX6A1, COX6A, COX6AL; cytochrome c oxidase subunit VIa polypeptide 1 (EC
19
+ 1339 COX6A2, COX6AH, COXVIAH; cytochrome c oxidase subunit VIa polypeptide 2 (EC
20
+ 1340 COX6B1, COX6B, COXG, COXVIb1; cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) (EC
21
+ 1345 COX6C; cytochrome c oxidase subunit VIc (EC
22
+ 1346 COX7A1, COX7A, COX7AH, COX7AM; cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) (EC
23
+ 1347 COX7A2, COX7AL, COX7AL1, COXVIIAL, COXVIIa-L, VIIAL; cytochrome c oxidase subunit VIIa polypeptide 2 (liver) (EC
24
+ 1349 COX7B; cytochrome c oxidase subunit VIIb (EC
25
+ 1350 COX7C; cytochrome c oxidase subunit VIIc (EC
26
+ 1351 COX8A, COX, COX8, COX8-2, COX8L, VIII, VIII-L; cytochrome c oxidase subunit VIIIA (ubiquitous) (EC
27
+ 1385 CREB1, CREB; cAMP responsive element binding protein 1; K05870 cyclic AMP-responsive element-binding protein 1
28
+ 1387 CREBBP, CBP, KAT3A, RSTS; CREB binding protein (EC
29
+ 146754 DNAH2, DNAHC2, DNHD3; dynein, axonemal, heavy chain 2; K10408 dynein heavy chain, axonemal
30
+ 148327 CREB3L4, AIBZIP, ATCE1, CREB3, CREB4, JAL, hJAL; cAMP responsive element binding protein 3-like 4; K09048 cyclic AMP-responsive element-binding protein 3
31
+ 1537 CYC1, UQCR4; cytochrome c-1; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
32
+ 160 AP2A1, ADTAA, AP2-ALPHA, CLAPA1; adaptor-related protein complex 2, alpha 1 subunit; K11824 AP-2 complex subunit alpha
33
+ 161 AP2A2, ADTAB, CLAPA2, HIP-9, HIP9, HYPJ; adaptor-related protein complex 2, alpha 2 subunit; K11824 AP-2 complex subunit alpha
34
+ 163 AP2B1, ADTB2, AP105B, AP2-BETA, CLAPB1; adaptor-related protein complex 2, beta 1 subunit; K11825 AP-2 complex subunit beta-1
35
+ 1639 DCTN1, DAP-150, DP-150, P135; dynactin 1; K04648 dynactin 1
36
+ 170712 COX7B2; cytochrome c oxidase subunit VIIb2 (EC
37
+ 1742 DLG4, PSD95, SAP-90, SAP90; discs, large homolog 4 (Drosophila); K11828 discs large protein 4
38
+ 2033 EP300, KAT3B, RSTS2, p300; E1A binding protein p300 (EC
39
+ 23186 RCOR1, COREST, RCOR; REST corepressor 1; K11829 REST corepressor 1
40
+ 23236 PLCB1, EIEE12, PI-PLC, PLC-154, PLC-I, PLC154, PLCB1A, PLCB1B; phospholipase C, beta 1 (phosphoinositide-specific) (EC
41
+ 246721 POLR2J2, HRPB11B, RPB11b1; polymerase (RNA) II (DNA directed) polypeptide J2; K03008 DNA-directed RNA polymerase II subunit RPB11
42
+ 25942 SIN3A; SIN3 transcription regulator homolog A (yeast); K11644 paired amphipathic helix protein Sin3a
43
+ 25981 DNAH1, DNAHC1, HDHC7, HL-11, HL11, XLHSRF-1; dynein, axonemal, heavy chain 1; K10408 dynein heavy chain, axonemal
44
+ 27019 DNAI1, CILD1, ICS, ICS1, PCD; dynein, axonemal, intermediate chain 1; K10409 dynein intermediate chain 1, axonemal
45
+ 27089 UQCRQ, QCR8, QP-C, QPC, UQCR7; ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa (EC
46
+ 27113 BBC3, JFY-1, JFY1, PUMA; BCL2 binding component 3; K10132 BCL2-binding component 3
47
+ 2776 GNAQ, G-ALPHA-q, GAQ; guanine nucleotide binding protein (G protein), q polypeptide; K04634 guanine nucleotide-binding protein G(q) subunit alpha
48
+ 2876 GPX1, GPXD, GSHPX1; glutathione peroxidase 1 (EC
49
+ 2902 GRIN1, GluN1, MRD8, NMDA1, NMDAR1, NR1; glutamate receptor, ionotropic, N-methyl D-aspartate 1; K05208 glutamate receptor, ionotropic, N-methyl D-aspartate 1
50
+ 2904 GRIN2B, GluN2B, MRD6, NMDAR2B, NR2B, hNR3; glutamate receptor, ionotropic, N-methyl D-aspartate 2B; K05210 glutamate [NMDA] receptor subunit epsilon-2
51
+ 291 SLC25A4, AAC1, ANT, ANT1, PEO2, PEO3, T1; solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4; K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
52
+ 2911 GRM1, GPRC1A, GRM1A, MGLUR1, MGLUR1A, SCAR13, mGlu1; glutamate receptor, metabotropic 1; K04604 metabotropic glutamate receptor 1/5
53
+ 2915 GRM5, GPRC1E, MGLUR5, mGlu5; glutamate receptor, metabotropic 5; K04604 metabotropic glutamate receptor 1/5
54
+ 292 SLC25A5, 2F1, AAC2, ANT2, T2, T3; solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5; K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
55
+ 293 SLC25A6, AAC3, ANT3, ANT3Y; solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6; K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
56
+ 29796 UQCR10, HSPC051, HSPC151, QCR9, UCCR7.2, UCRC; ubiquinol-cytochrome c reductase, complex III subunit X; K00419 ubiquinol-cytochrome c reductase subunit 9
57
+ 3064 HTT, HD, IT15; huntingtin; K04533 huntingtin
58
+ 3065 HDAC1, GON-10, HD1, RPD3, RPD3L1; histone deacetylase 1 (EC
59
+ 3066 HDAC2, HD2, RPD3, YAF1; histone deacetylase 2 (EC
60
+ 3092 HIP1, ILWEQ; huntingtin interacting protein 1; K04559 huntingtin interacting protein 1
61
+ 317 APAF1, APAF-1, CED4; apoptotic peptidase activating factor 1; K02084 apoptotic protease-activating factor
62
+ 341947 COX8C, COX8-3; cytochrome c oxidase subunit VIIIC; K02273 cytochrome c oxidase subunit 8
63
+ 3708 ITPR1, INSP3R1, IP3R, IP3R1, SCA15, SCA16; inositol 1,4,5-trisphosphate receptor, type 1; K04958 inositol 1,4,5-triphosphate receptor type 1
64
+ 374291 NDUFS7, CI-20, CI-20KD, MY017, PSST; NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) (EC
65
+ 387332 TBPL2, TBP2, TRF3; TATA box binding protein like 2; K03120 transcription initiation factor TFIID TATA-box-binding protein
66
+ 440567 UQCRHL; ubiquinol-cytochrome c reductase hinge protein-like; K00416 ubiquinol-cytochrome c reductase subunit 6
67
+ 4508 ATP6, ATPase6, MTATP6, MT-ATP6, RP; ATP synthase F0 subunit 6; K02126 F-type H+-transporting ATPase subunit a [EC
68
+ 4509 ATP8, ATPase8, MTATP8, MT-ATP8; ATP synthase F0 subunit 8; K02125 F-type H+-transporting ATPase subunit 8 [EC
69
+ 4512 COX1, COI, MTCO1, MT-CO1; cytochrome c oxidase subunit I; K02256 cytochrome c oxidase subunit 1 [EC
70
+ 4513 COX2, COII, MTCO2, MT-CO2; cytochrome c oxidase subunit II; K02261 cytochrome c oxidase subunit 2
71
+ 4514 COX3, COIII, MTCO3, MT-CO3; cytochrome c oxidase III; K02262 cytochrome c oxidase subunit 3
72
+ 4519 CYTB, MTCYB, MT-CYB; cytochrome b; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
73
+ 4694 NDUFA1, CI-MWFE, MWFE, ZNF183; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa (EC
74
+ 4695 NDUFA2, B8, CD14, CIB8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa; K03946 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [EC
75
+ 4696 NDUFA3, B9, CI-B9; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa; K03947 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 3 [EC
76
+ 4697 NDUFA4, CI-9k, CI-MLRQ, MLRQ; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (EC
77
+ 4698 NDUFA5, B13, CI-13KD-B, CI-13kB, NUFM, UQOR13; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa (EC
78
+ 4700 NDUFA6, B14, CI-B14, LYRM6, NADHB14; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa; K03950 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 6 [EC
79
+ 4701 NDUFA7, B14.5a; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa; K03951 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 7 [EC
80
+ 4702 NDUFA8, CI-19KD, CI-PGIV, PGIV; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa (EC
81
+ 4704 NDUFA9, CC6, CI-39k, CI39k, NDUFS2L, SDR22E1; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa; K03953 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 [EC
82
+ 4705 NDUFA10, CI-42KD, CI-42k; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa (EC
83
+ 4706 NDUFAB1, ACP, FASN2A, SDAP; NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa; K03955 NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1 [EC
84
+ 4707 NDUFB1, CI-MNLL, CI-SGDH, MNLL; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa; K03957 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 1 [EC
85
+ 4708 NDUFB2, AGGG, CI-AGGG; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa (EC
86
+ 4709 NDUFB3, B12, CI-B12; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa; K03959 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 [EC
87
+ 4710 NDUFB4, B15, CI-B15; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa (EC
88
+ 4711 NDUFB5, CISGDH, SGDH; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa (EC
89
+ 4712 NDUFB6, B17, CI; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa (EC
90
+ 4713 NDUFB7, B18, CI-B18; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa (EC
91
+ 4714 NDUFB8, ASHI, CI-ASHI; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa; K03964 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 [EC
92
+ 4715 NDUFB9, B22, LYRM3, UQOR22; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa; K03965 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 9 [EC
93
+ 4716 NDUFB10, PDSW; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa; K03966 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 10 [EC
94
+ 4717 NDUFC1, KFYI; NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa; K03967 NADH dehydrogenase (ubiquinone) 1 subcomplex unknown 1 [EC
95
+ 4718 NDUFC2, B14.5b, CI-B14.5b, HLC-1, NADHDH2; NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa; K03968 NADH dehydrogenase (ubiquinone) 1 subcomplex unknown 2 [EC
96
+ 4719 NDUFS1, CI-75Kd, CI-75k, PRO1304; NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) (EC
97
+ 4720 NDUFS2, CI-49; NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) (EC
98
+ 4722 NDUFS3, CI-30; NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) (EC
99
+ 4723 NDUFV1, CI-51K, CI51KD, UQOR1; NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa (EC
100
+ 4724 NDUFS4, AQDQ, CI-18; NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase); K03937 NADH dehydrogenase (ubiquinone) Fe-S protein 4 [EC
101
+ 4725 NDUFS5, CI-15k, CI15K; NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase); K03938 NADH dehydrogenase (ubiquinone) Fe-S protein 5 [EC
102
+ 4726 NDUFS6, CI-13kA, CI-13kD-A, CI13KDA; NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) (EC
103
+ 4728 NDUFS8, CI-23k, CI23KD, TYKY; NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) (EC
104
+ 4729 NDUFV2, CI-24k; NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa (EC
105
+ 4731 NDUFV3, CI-10k, CI-9KD; NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa (EC
106
+ 4899 NRF1, ALPHA-PAL; nuclear respiratory factor 1; K11831 nuclear respiratory factor 1
107
+ 498 ATP5A1, ATP5A, ATP5AL2, ATPM, MOM2, OMR, ORM, hATP1; ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle; K02132 F-type H+-transporting ATPase subunit alpha [EC
108
+ 506 ATP5B, ATPMB, ATPSB; ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (EC
109
+ 509 ATP5C1, ATP5C, ATP5CL1; ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (EC
110
+ 51079 NDUFA13, B16.6, CDA016, GRIM-19, GRIM19; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13; K11353 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 13 [EC
111
+ 51164 DCTN4, DYN4, P62; dynactin 4 (p62); K10426 dynactin 4
112
+ 513 ATP5D; ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit (EC
113
+ 514 ATP5E, ATPE, MC5DN3; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit (EC
114
+ 515 ATP5F1, PIG47; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1; K02127 F-type H+-transporting ATPase subunit b [EC
115
+ 516 ATP5G1, ATP5A, ATP5G; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9); K02128 F-type H+-transporting ATPase subunit c [EC
116
+ 517 ATP5G2, ATP5A; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9); K02128 F-type H+-transporting ATPase subunit c [EC
117
+ 518 ATP5G3, P3; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9); K02128 F-type H+-transporting ATPase subunit c [EC
118
+ 522 ATP5J, ATP5, ATP5A, ATPM, CF6, F6; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (EC
119
+ 5330 PLCB2; phospholipase C, beta 2 (EC
120
+ 5331 PLCB3; phospholipase C, beta 3 (phosphatidylinositol-specific) (EC
121
+ 5332 PLCB4, ARCND2, PI-PLC; phospholipase C, beta 4 (EC
122
+ 539 ATP5O, ATPO, OSCP; ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (EC
123
+ 54205 CYCS, CYC, HCS, THC4; cytochrome c, somatic; K08738 cytochrome c
124
+ 5430 POLR2A, POLR2, POLRA, RPB1, RPBh1, RPO2, RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed) polypeptide A, 220kDa (EC
125
+ 5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa (EC
126
+ 5432 POLR2C, RPB3, RPB31, hRPB33, hsRPB3; polymerase (RNA) II (DNA directed) polypeptide C, 33kDa (EC
127
+ 5433 POLR2D, HSRBP4, HSRPB4, RBP4, RPB16; polymerase (RNA) II (DNA directed) polypeptide D (EC
128
+ 5434 POLR2E, RPABC1, RPB5, XAP4, hRPB25, hsRPB5; polymerase (RNA) II (DNA directed) polypeptide E, 25kDa (EC
129
+ 5435 POLR2F, HRBP14.4, POLRF, RPABC2, RPB14.4, RPB6; polymerase (RNA) II (DNA directed) polypeptide F (EC
130
+ 5436 POLR2G, RPB19, RPB7, hRPB19, hsRPB7; polymerase (RNA) II (DNA directed) polypeptide G (EC
131
+ 5437 POLR2H, RPABC3, RPB17, RPB8, hsRPB8; polymerase (RNA) II (DNA directed) polypeptide H (EC
132
+ 5438 POLR2I, RPB9, hRPB14.5; polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa (EC
133
+ 5439 POLR2J, POLR2J1, RPB11, RPB11A, RPB11m, hRPB14; polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa (EC
134
+ 5440 POLR2K, ABC10-alpha, RPABC4, RPB10alpha, RPB12, RPB7.0, hRPB7.0, hsRPB10a; polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa (EC
135
+ 5441 POLR2L, RBP10, RPABC5, RPB10, RPB10beta, RPB7.6, hRPB7.6; polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa (EC
136
+ 54539 NDUFB11, CI-ESSS, ESSS, NP17.3, Np15, P17.3; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa; K11351 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 11 [EC
137
+ 5468 PPARG, CIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgamma; peroxisome proliferator-activated receptor gamma; K08530 peroxisome proliferator-activated receptor gamma
138
+ 548644 POLR2J3, POLR2J2, RPB11b1, RPB11b2; polymerase (RNA) II (DNA directed) polypeptide J3; K03008 DNA-directed RNA polymerase II subunit RPB11
139
+ 55081 IFT57, ESRRBL1, HIPPI, MHS4R2; intraflagellar transport 57 homolog (Chlamydomonas); K04638 estrogen-related receptor beta like 1
140
+ 55567 DNAH3, DLP3, DNAHC3B, Hsadhc3; dynein, axonemal, heavy chain 3; K10408 dynein heavy chain, axonemal
141
+ 55967 NDUFA12, B17.2, DAP13; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12; K11352 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 12 [EC
142
+ 56901 NDUFA4L2, NUOMS; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2; K03948 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 4 [EC
143
+ 581 BAX, BCL2L4; BCL2-associated X protein; K02159 apoptosis regulator BAX
144
+ 5978 REST, NRSF, XBR; RE1-silencing transcription factor; K09222 RE1-silencing transcription factor
145
+ 627 BDNF, ANON2, BULN2; brain-derived neurotrophic factor; K04355 brain-derived neurotrophic factor
146
+ 6389 SDHA, CMD1GG, FP, PGL5, SDH1, SDH2, SDHF; succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (EC
147
+ 6390 SDHB, IP, PGL4, SDH, SDH1, SDH2, SDHIP; succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (EC
148
+ 6391 SDHC, CYB560, CYBL, PGL3, QPS1, SDH3; succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa; K00236 succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
149
+ 6392 SDHD, CBT1, PGL, PGL1, SDH4; succinate dehydrogenase complex, subunit D, integral membrane protein; K00237 succinate dehydrogenase (ubiquinone) membrane anchor subunit
150
+ 64446 DNAI2, CILD9; dynein, axonemal, intermediate chain 2; K11143 dynein intermediate chain 2, axonemal
151
+ 64764 CREB3L2, BBF2H7; cAMP responsive element binding protein 3-like 2; K09048 cyclic AMP-responsive element-binding protein 3
152
+ 6647 SOD1, ALS, ALS1, IPOA, SOD, hSod1, homodimer; superoxide dismutase 1, soluble (EC
153
+ 6648 SOD2, IPOB, MNSOD, MVCD6; superoxide dismutase 2, mitochondrial (EC
154
+ 6667 SP1; Sp1 transcription factor; K04684 transcription factor Sp1
155
+ 6874 TAF4, TAF2C, TAF2C1, TAF4A, TAFII130, TAFII135; TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa; K03129 transcription initiation factor TFIID subunit 4
156
+ 6875 TAF4B, TAF2C2, TAFII105; TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa; K03129 transcription initiation factor TFIID subunit 4
157
+ 6908 TBP, GTF2D, GTF2D1, HDL4, SCA17, TFIID; TATA box binding protein; K03120 transcription initiation factor TFIID TATA-box-binding protein
158
+ 7019 TFAM, MTTF1, MTTFA, TCF6, TCF6L1, TCF6L2, TCF6L3; transcription factor A, mitochondrial; K11830 transcription factor A, mitochondrial
159
+ 7052 TGM2, G-ALPHA-h, GNAH, TG2, TGC; transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) (EC
160
+ 7157 TP53, BCC7, LFS1, P53, TRP53; tumor protein p53; K04451 tumor protein p53
161
+ 7350 UCP1, SLC25A7, UCP; uncoupling protein 1 (mitochondrial, proton carrier); K08769 solute carrier family 25 (mitochondrial uncoupling protein), member 7
162
+ 7381 UQCRB, QCR7, QP-C, QPC, UQBC, UQBP, UQCR6, UQPC; ubiquinol-cytochrome c reductase binding protein (EC
163
+ 7384 UQCRC1, D3S3191, QCR1, UQCR1; ubiquinol-cytochrome c reductase core protein I (EC
164
+ 7385 UQCRC2, QCR2, UQCR2; ubiquinol-cytochrome c reductase core protein II (EC
165
+ 7386 UQCRFS1, RIP1, RIS1, RISP, UQCR5; ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 (EC
166
+ 7388 UQCRH, QCR6, UQCR8; ubiquinol-cytochrome c reductase hinge protein (EC
167
+ 7416 VDAC1, PORIN, VDAC-1; voltage-dependent anion channel 1; K05862 voltage-dependent anion channel protein 1
168
+ 7417 VDAC2, POR; voltage-dependent anion channel 2; K15040 voltage-dependent anion channel protein 2
169
+ 7419 VDAC3, HD-VDAC3, VDAC-3; voltage-dependent anion channel 3; K15041 voltage-dependent anion channel protein 3
170
+ 7802 DNALI1, P28, dJ423B22.5, hp28; dynein, axonemal, light intermediate chain 1; K10410 dynein light intermediate chain, axonemal
171
+ 8218 CLTCL1, CHC22, CLH22, CLTCL, CLTD; clathrin, heavy chain-like 1; K04646 clathrin heavy chain
172
+ 83447 SLC25A31, AAC4, ANT4, SFEC35kDa; solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31; K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
173
+ 83544 DNAL1, C14orf168, CILD16; dynein, axonemal, light chain 1; K10411 dynein light chain 1, axonemal
174
+ 836 CASP3, CPP32, CPP32B, SCA-1; caspase 3, apoptosis-related cysteine peptidase (EC
175
+ 841 CASP8, ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5; caspase 8, apoptosis-related cysteine peptidase (EC
176
+ 842 CASP9, APAF-3, APAF3, CASPASE-9c, ICE-LAP6, MCH6, PPP1R56; caspase 9, apoptosis-related cysteine peptidase (EC
177
+ 84699 CREB3L3, CREB-H, CREBH; cAMP responsive element binding protein 3-like 3; K09048 cyclic AMP-responsive element-binding protein 3
178
+ 84701 COX4I2, COX4, COX4-2, COX4B, COX4L2, COXIV-2, dJ857M17.2; cytochrome c oxidase subunit IV isoform 2 (lung); K02263 cytochrome c oxidase subunit 4
179
+ 9001 HAP1, HAP2, HIP5, HLP, hHLP1; huntingtin-associated protein 1; K04647 huntingtin-associated protein 1
180
+ 90993 CREB3L1, OASIS; cAMP responsive element binding protein 3-like 1; K09048 cyclic AMP-responsive element-binding protein 3
181
+ 9167 COX7A2L, COX7AR, COX7RP, EB1, SIG81; cytochrome c oxidase subunit VIIa polypeptide 2 like; K02270 cytochrome c oxidase subunit 7a
182
+ 9377 COX5A, COX, COX-VA, VA; cytochrome c oxidase subunit Va (EC
183
+ 9519 TBPL1, MGC
184
+ 9586 CREB5, CRE-BPA; cAMP responsive element binding protein 5; K09047 cyclic AMP-responsive element-binding protein 5