t2-web 0.1.9 → 0.2.0
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- data/Gemfile +3 -0
- data/Rakefile +4 -3
- data/bin/t2-web +0 -0
- data/bin/t2_webapp.rb +45 -10
- data/public/t2web/scripts/results.js +6 -2
- data/public/t2web/tmp/outputs/049c41c6-77ed-457b-a342-1a779055156a/UniProtID +166 -0
- data/public/t2web/tmp/outputs/049c41c6-77ed-457b-a342-1a779055156a/ValidatedProtein +8 -0
- data/public/t2web/tmp/outputs/146d17ee-9418-4b59-89db-d9d0b9b8986d/Document_ID +1 -0
- data/public/t2web/tmp/outputs/146d17ee-9418-4b59-89db-d9d0b9b8986d/Document_title +1 -0
- data/public/t2web/tmp/outputs/2dbcdad5-5344-42c6-b75d-0786bb64ab21/UniProtID +185 -0
- data/public/t2web/tmp/outputs/2dbcdad5-5344-42c6-b75d-0786bb64ab21/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/32cc09db-2097-4f3d-af66-4c259e1b6ca4/c.error +5 -0
- data/public/t2web/tmp/outputs/37ddef2f-dc86-455b-83dd-77db719a0f43/UniProtID +185 -0
- data/public/t2web/tmp/outputs/37ddef2f-dc86-455b-83dd-77db719a0f43/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/38e16f78-651d-4460-ac17-21fa286316f7/UniProtID +185 -0
- data/public/t2web/tmp/outputs/38e16f78-651d-4460-ac17-21fa286316f7/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/39b05ef7-9d44-4985-b91f-8bb364318f08/DocumentID +1 -0
- data/public/t2web/tmp/outputs/39b05ef7-9d44-4985-b91f-8bb364318f08/DocumentTitle +1 -0
- data/public/t2web/tmp/outputs/3d98e130-2397-4685-a42a-7695ec31e167/UniProtID +185 -0
- data/public/t2web/tmp/outputs/3d98e130-2397-4685-a42a-7695ec31e167/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/42d7d982-dee2-4d10-9f99-0739e5f69128/UniProtID +185 -0
- data/public/t2web/tmp/outputs/42d7d982-dee2-4d10-9f99-0739e5f69128/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/5f548064-62e9-4929-8c19-bc3becd0085a/DocumentID +1 -0
- data/public/t2web/tmp/outputs/5f548064-62e9-4929-8c19-bc3becd0085a/DocumentTitle +1 -0
- data/public/t2web/tmp/outputs/64180866-65fb-4c18-8117-8433809858e9/UniProtID +153 -0
- data/public/t2web/tmp/outputs/64180866-65fb-4c18-8117-8433809858e9/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/69214823-0f5f-4a0c-8a96-ae209b383689/c.error +5 -0
- data/public/t2web/tmp/outputs/6cc7b825-5acb-487f-b0cc-effd291d7ca8/UniProtID +185 -0
- data/public/t2web/tmp/outputs/6cc7b825-5acb-487f-b0cc-effd291d7ca8/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/6f1e0b58-6ab6-4ab8-91bd-8b765c1b0114/UniProtID +185 -0
- data/public/t2web/tmp/outputs/6f1e0b58-6ab6-4ab8-91bd-8b765c1b0114/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/758c71b6-41fb-4463-8cc9-21aa556385d1/c +1 -0
- data/public/t2web/tmp/outputs/78e61965-6f39-483d-8af7-7be640a3f33b/c +1 -0
- data/public/t2web/tmp/outputs/7963e714-68cd-44f7-8c52-e2352bef809d/DocumentID +1 -0
- data/public/t2web/tmp/outputs/7963e714-68cd-44f7-8c52-e2352bef809d/DocumentTitle +1 -0
- data/public/t2web/tmp/outputs/7e42db30-3bac-4fe9-b253-66cd35e6c7f9/c.error +5 -0
- data/public/t2web/tmp/outputs/7e731896-5b22-45eb-8ce0-cdae3d66ffe4/UniProtID +185 -0
- data/public/t2web/tmp/outputs/7e731896-5b22-45eb-8ce0-cdae3d66ffe4/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/81835a40-d9e5-4ab2-a3c9-c39bee1cd391/UniProtID +185 -0
- data/public/t2web/tmp/outputs/81835a40-d9e5-4ab2-a3c9-c39bee1cd391/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/8353d6f6-8e5f-4e5d-9d65-d303330b31ef/c +1 -0
- data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Explained_concept_ID +50 -0
- data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Explained_concept_name +50 -0
- data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Match_concept_ID +5 -0
- data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Matched_disease_names +5 -0
- data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Query_concept_ID +5 -0
- data/public/t2web/tmp/outputs/84ab8b42-a473-4bb8-94df-6a53f00b32db/Summed_Similarity_score +5 -0
- data/public/t2web/tmp/outputs/881e2b9f-02b7-43ca-8e1f-db3f019e1b50/c +1 -0
- data/public/t2web/tmp/outputs/88f3b8a9-f544-4a5d-9d2d-bbb98b802a46/DocumentID +1 -0
- data/public/t2web/tmp/outputs/88f3b8a9-f544-4a5d-9d2d-bbb98b802a46/DocumentTitle +1 -0
- data/public/t2web/tmp/outputs/8d346bd2-a96d-4f33-8f23-2b0e53389dbe/UniProtID +185 -0
- data/public/t2web/tmp/outputs/8d346bd2-a96d-4f33-8f23-2b0e53389dbe/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/8f6e128f-4f06-47d9-a507-7af81da097e7/UniProtID +185 -0
- data/public/t2web/tmp/outputs/8f6e128f-4f06-47d9-a507-7af81da097e7/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/99581b3a-a73a-469f-8377-43d7bf804bfa/Document_ID +1 -0
- data/public/t2web/tmp/outputs/99581b3a-a73a-469f-8377-43d7bf804bfa/Document_title +1 -0
- data/public/t2web/tmp/outputs/9b72ed6c-ab8d-443e-a2d7-28aa5ac901e7/UniProtID +185 -0
- data/public/t2web/tmp/outputs/9b72ed6c-ab8d-443e-a2d7-28aa5ac901e7/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/9e76bfc2-4ecb-4c9c-9446-eb4e462a9002/Pathway +1 -0
- data/public/t2web/tmp/outputs/9e76bfc2-4ecb-4c9c-9446-eb4e462a9002/geneList +184 -0
- data/public/t2web/tmp/outputs/9e76bfc2-4ecb-4c9c-9446-eb4e462a9002/gene_description +184 -0
- data/public/t2web/tmp/outputs/a7c012b1-4316-4780-8cb2-82f270e0e8fb/c.error +5 -0
- data/public/t2web/tmp/outputs/af874bf7-fdf2-4aaa-a2bb-95e1d2217942/UniProtID +185 -0
- data/public/t2web/tmp/outputs/af874bf7-fdf2-4aaa-a2bb-95e1d2217942/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/bda0e4c4-1703-4d96-b47d-a900e40d6545/UniProtID +185 -0
- data/public/t2web/tmp/outputs/bda0e4c4-1703-4d96-b47d-a900e40d6545/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/c48f4ca9-b683-4108-b89e-dffa508dd288/UniProtID +185 -0
- data/public/t2web/tmp/outputs/c48f4ca9-b683-4108-b89e-dffa508dd288/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/c524df09-3e29-4cdc-8c23-9f7db851ac3c/DocumentID +1 -0
- data/public/t2web/tmp/outputs/c524df09-3e29-4cdc-8c23-9f7db851ac3c/DocumentTitle +1 -0
- data/public/t2web/tmp/outputs/c6244429-b042-45c9-98f3-ea54fc38f2d6/UniProtID +185 -0
- data/public/t2web/tmp/outputs/c6244429-b042-45c9-98f3-ea54fc38f2d6/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/cbbe70ea-0fa9-422e-9d9a-568f490b9176/UniProtID +185 -0
- data/public/t2web/tmp/outputs/cbbe70ea-0fa9-422e-9d9a-568f490b9176/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/ccf5fb69-9d43-47df-9eb8-88127952a4dd/UniProtID +185 -0
- data/public/t2web/tmp/outputs/ccf5fb69-9d43-47df-9eb8-88127952a4dd/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/d510bb4c-1e20-4fd6-9183-b7428d9fc487/UniProtID +185 -0
- data/public/t2web/tmp/outputs/d510bb4c-1e20-4fd6-9183-b7428d9fc487/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/db765c29-3800-45f8-9c4c-243668820ecc/c +1 -0
- data/public/t2web/tmp/outputs/e612877e-f9a4-46db-a790-0a97c91fc939/c +1 -0
- data/public/t2web/tmp/outputs/f4e529bb-7553-485f-9efd-37ab3f9efd76/UniProtID +185 -0
- data/public/t2web/tmp/outputs/f4e529bb-7553-485f-9efd-37ab3f9efd76/ValidatedProtein +10 -0
- data/public/t2web/tmp/outputs/f7ce53cc-1200-4552-8d92-d8c6d3247efd/c +1 -0
- data/public/t2web/tmp/outputs/f7fdb125-44bb-444f-957c-3e12246d6e57/DocumentID +1 -0
- data/public/t2web/tmp/outputs/f7fdb125-44bb-444f-957c-3e12246d6e57/DocumentTitle +1 -0
- data/views/form.haml +9 -9
- data/views/results.haml +6 -4
- metadata +348 -245
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<b>Pterygium</b>
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2
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Conjunctival Pterygium
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3
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Entire conjunctiva
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conjunctiva
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5
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ocular surface disease
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ocular surface disease
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epithelium of conjunctiva
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S100A9
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S100A8
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vimentin location
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pancreatic duct dysplasia
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S100B
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malignant neoplasm of pancreas
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S100P
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feline urological syndrome
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FUS
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EWSR1
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serial analysis of gene expression
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ATF1
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Ewings sarcoma
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t(12;22)(q13;q12)
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CDH17
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Pterygium
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Conjunctival Pterygium
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Entire conjunctiva
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conjunctiva
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epithelium of conjunctiva
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ocular surface disease
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ocular surface disease
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glycation
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Eye Neoplasms
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malignant melanoma of eye
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s100b
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S100B
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Protein Overexpression
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nervous system disorder
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tumor cells, malignant
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Biological Markers
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Inflammation
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phosphoglycerate dehydrogenase activity
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Serum
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primary malignant neoplasm
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Lactating porcine mammary tissue catabolizes branched-chain amino acids for glutamine and aspartate synthesis.
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84
|
+
Q9UCC8
|
85
|
+
Q9UCD1
|
86
|
+
Q9UQ58
|
87
|
+
P15943
|
88
|
+
Q06335
|
89
|
+
Q06481
|
90
|
+
Q13861
|
91
|
+
Q14594
|
92
|
+
Q14662
|
93
|
+
Q71U10
|
94
|
+
Q7M4L3
|
95
|
+
Q9BT36
|
96
|
+
Q9TVV0
|
97
|
+
Q9U4H3
|
98
|
+
Q9W5F1
|
99
|
+
P05067
|
100
|
+
P08592
|
101
|
+
P09000
|
102
|
+
P12023
|
103
|
+
P78438
|
104
|
+
P97487
|
105
|
+
P97942
|
106
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+
Q10651
|
107
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+
Q13764
|
108
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Q13778
|
109
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Q13793
|
110
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+
Q16011
|
111
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Q16014
|
112
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+
Q16019
|
113
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+
Q16020
|
114
|
+
Q18583
|
115
|
+
Q547B7
|
116
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+
Q6GSC0
|
117
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+
Q8WZ99
|
118
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+
Q95ZX1
|
119
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+
Q99K32
|
120
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+
Q9BT38
|
121
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+
Q9UC33
|
122
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+
Q9UCA9
|
123
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+
Q9UCB6
|
124
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+
Q9UCC8
|
125
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+
Q9UCD1
|
126
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+
Q9UQ58
|
127
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+
P15943
|
128
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Q06335
|
129
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Q06481
|
130
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Q13861
|
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Q14594
|
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Q14662
|
133
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Q71U10
|
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Q7M4L3
|
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Q9BT36
|
136
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+
Q9TVV0
|
137
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Q9U4H3
|
138
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+
Q9W5F1
|
139
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+
P05067
|
140
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P08592
|
141
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+
P09000
|
142
|
+
P12023
|
143
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+
P78438
|
144
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+
P97487
|
145
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+
P97942
|
146
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+
Q10651
|
147
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Q13764
|
148
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Q13778
|
149
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Q13793
|
150
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Q16011
|
151
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Q16014
|
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Q16019
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Q16020
|
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Q18583
|
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Q547B7
|
156
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Q6GSC0
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Q8WZ99
|
158
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Q95ZX1
|
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Q99K32
|
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Q9BT38
|
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Q9UC33
|
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Q9UCA9
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Q9UCB6
|
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Q9UCC8
|
165
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Q9UCD1
|
166
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Q9UQ58
|
167
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+
<b>P08396</b>
|
168
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P08397
|
169
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P19356
|
170
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+
P22907
|
171
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P28789
|
172
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Q16012
|
173
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Q2VQW9
|
174
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<b>Q08AP2</b>
|
175
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Q08AP3
|
176
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Q15439
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Q15440
|
178
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Q15441
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Q60721
|
180
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Q60722
|
181
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Q62211
|
182
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+
Q62655
|
183
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+
Q64072
|
184
|
+
Q80UE8
|
185
|
+
Q99N33
|
@@ -0,0 +1,185 @@
|
|
1
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+
<b>P70386</b>
|
2
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+
Q02527
|
3
|
+
Q09327
|
4
|
+
Q10470
|
5
|
+
Q14CK5
|
6
|
+
Q6IC49
|
7
|
+
Q9UH32
|
8
|
+
P70386
|
9
|
+
Q02527
|
10
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+
Q09327
|
11
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+
Q10470
|
12
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+
Q14CK5
|
13
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+
Q6IC49
|
14
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+
Q9UH32
|
15
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P70386
|
16
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Q02527
|
17
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Q09327
|
18
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+
Q10470
|
19
|
+
Q14CK5
|
20
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+
Q6IC49
|
21
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+
Q9UH32
|
22
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+
P70386
|
23
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+
Q02527
|
24
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Q09327
|
25
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+
Q10470
|
26
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+
Q14CK5
|
27
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+
Q6IC49
|
28
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+
Q9UH32
|
29
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+
<b>A8K7C2</b>
|
30
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+
O73815
|
31
|
+
P02571
|
32
|
+
P02579
|
33
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+
P12714
|
34
|
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P14104
|
35
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P53478
|
36
|
+
P60010
|
37
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+
P63259
|
38
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+
P63260
|
39
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+
P63261
|
40
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+
P99022
|
41
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+
Q5U032
|
42
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+
Q6P3K9
|
43
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+
Q7ZVI7
|
44
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+
Q96E67
|
45
|
+
Q9P3X6
|
46
|
+
Q9P3X7
|
47
|
+
<b>P15943</b>
|
48
|
+
Q06335
|
49
|
+
Q06481
|
50
|
+
Q13861
|
51
|
+
Q14594
|
52
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+
Q14662
|
53
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+
Q71U10
|
54
|
+
Q7M4L3
|
55
|
+
Q9BT36
|
56
|
+
Q9TVV0
|
57
|
+
Q9U4H3
|
58
|
+
Q9W5F1
|
59
|
+
P05067
|
60
|
+
P08592
|
61
|
+
P09000
|
62
|
+
P12023
|
63
|
+
P78438
|
64
|
+
P97487
|
65
|
+
P97942
|
66
|
+
Q10651
|
67
|
+
Q13764
|
68
|
+
Q13778
|
69
|
+
Q13793
|
70
|
+
Q16011
|
71
|
+
Q16014
|
72
|
+
Q16019
|
73
|
+
Q16020
|
74
|
+
Q18583
|
75
|
+
Q547B7
|
76
|
+
Q6GSC0
|
77
|
+
Q8WZ99
|
78
|
+
Q95ZX1
|
79
|
+
Q99K32
|
80
|
+
Q9BT38
|
81
|
+
Q9UC33
|
82
|
+
Q9UCA9
|
83
|
+
Q9UCB6
|
84
|
+
Q9UCC8
|
85
|
+
Q9UCD1
|
86
|
+
Q9UQ58
|
87
|
+
P15943
|
88
|
+
Q06335
|
89
|
+
Q06481
|
90
|
+
Q13861
|
91
|
+
Q14594
|
92
|
+
Q14662
|
93
|
+
Q71U10
|
94
|
+
Q7M4L3
|
95
|
+
Q9BT36
|
96
|
+
Q9TVV0
|
97
|
+
Q9U4H3
|
98
|
+
Q9W5F1
|
99
|
+
P05067
|
100
|
+
P08592
|
101
|
+
P09000
|
102
|
+
P12023
|
103
|
+
P78438
|
104
|
+
P97487
|
105
|
+
P97942
|
106
|
+
Q10651
|
107
|
+
Q13764
|
108
|
+
Q13778
|
109
|
+
Q13793
|
110
|
+
Q16011
|
111
|
+
Q16014
|
112
|
+
Q16019
|
113
|
+
Q16020
|
114
|
+
Q18583
|
115
|
+
Q547B7
|
116
|
+
Q6GSC0
|
117
|
+
Q8WZ99
|
118
|
+
Q95ZX1
|
119
|
+
Q99K32
|
120
|
+
Q9BT38
|
121
|
+
Q9UC33
|
122
|
+
Q9UCA9
|
123
|
+
Q9UCB6
|
124
|
+
Q9UCC8
|
125
|
+
Q9UCD1
|
126
|
+
Q9UQ58
|
127
|
+
P15943
|
128
|
+
Q06335
|
129
|
+
Q06481
|
130
|
+
Q13861
|
131
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+
Q14594
|
132
|
+
Q14662
|
133
|
+
Q71U10
|
134
|
+
Q7M4L3
|
135
|
+
Q9BT36
|
136
|
+
Q9TVV0
|
137
|
+
Q9U4H3
|
138
|
+
Q9W5F1
|
139
|
+
P05067
|
140
|
+
P08592
|
141
|
+
P09000
|
142
|
+
P12023
|
143
|
+
P78438
|
144
|
+
P97487
|
145
|
+
P97942
|
146
|
+
Q10651
|
147
|
+
Q13764
|
148
|
+
Q13778
|
149
|
+
Q13793
|
150
|
+
Q16011
|
151
|
+
Q16014
|
152
|
+
Q16019
|
153
|
+
Q16020
|
154
|
+
Q18583
|
155
|
+
Q547B7
|
156
|
+
Q6GSC0
|
157
|
+
Q8WZ99
|
158
|
+
Q95ZX1
|
159
|
+
Q99K32
|
160
|
+
Q9BT38
|
161
|
+
Q9UC33
|
162
|
+
Q9UCA9
|
163
|
+
Q9UCB6
|
164
|
+
Q9UCC8
|
165
|
+
Q9UCD1
|
166
|
+
Q9UQ58
|
167
|
+
<b>P08396</b>
|
168
|
+
P08397
|
169
|
+
P19356
|
170
|
+
P22907
|
171
|
+
P28789
|
172
|
+
Q16012
|
173
|
+
Q2VQW9
|
174
|
+
<b>Q08AP2</b>
|
175
|
+
Q08AP3
|
176
|
+
Q15439
|
177
|
+
Q15440
|
178
|
+
Q15441
|
179
|
+
Q60721
|
180
|
+
Q60722
|
181
|
+
Q62211
|
182
|
+
Q62655
|
183
|
+
Q64072
|
184
|
+
Q80UE8
|
185
|
+
Q99N33
|