t2-web 0.1.1 → 0.1.2

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Files changed (115) hide show
  1. data/CHANGES +3 -1
  2. data/README +3 -3
  3. data/Rakefile +1 -1
  4. data/bin/t2_webapp.rb +5 -5
  5. data/public/{css → t2web/css}/form.css +0 -0
  6. data/public/t2web/css/results.css +29 -0
  7. data/public/{css → t2web/css}/results_header.css +0 -0
  8. data/public/{css → t2web/css}/results_navigation.css +0 -0
  9. data/public/{css → t2web/css}/tipsy.css +0 -0
  10. data/public/{images → t2web/images}/bullet_go.png +0 -0
  11. data/public/{images → t2web/images}/lumc_logo2.png +0 -0
  12. data/public/{images → t2web/images}/nbic_logo.gif +0 -0
  13. data/public/{images → t2web/images}/snake_transparent.gif +0 -0
  14. data/public/{images → t2web/images}/tipsy.gif +0 -0
  15. data/public/{scripts → t2web/scripts}/form.js +0 -0
  16. data/public/{scripts → t2web/scripts}/jquery-1.6.1.js +0 -0
  17. data/public/{scripts → t2web/scripts}/jquery.tipsy.js +0 -0
  18. data/public/{scripts → t2web/scripts}/results.js +0 -0
  19. data/views/form.haml +9 -9
  20. data/views/results.haml +3 -3
  21. metadata +19 -112
  22. data/doc/classes/WebT2App.html +0 -1123
  23. data/doc/classes/WebT2App.src/M000001.html +0 -18
  24. data/doc/classes/WebT2App.src/M000002.html +0 -25
  25. data/doc/classes/WebT2App.src/M000003.html +0 -22
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  50. data/doc/classes/WebT2App.src/M000028.html +0 -25
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  58. data/doc/classes/WebT2App.src/M000036.html +0 -18
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  70. data/doc/classes/WebT2App.src/M000048.html +0 -18
  71. data/doc/classes/WebT2App.src/M000049.html +0 -32
  72. data/doc/classes/WebT2App.src/M000050.html +0 -27
  73. data/doc/created.rid +0 -1
  74. data/doc/files/bin/t2_webapp_rb.html +0 -115
  75. data/doc/files/pkg/t2-web-0_0_2/bin/web_t2_service_rb.html +0 -114
  76. data/doc/files/pkg/t2-web-0_0_3/bin/t2_webapp_rb.html +0 -115
  77. data/doc/files/pkg/t2-web-0_0_3/bin/web_t2_service_rb.html +0 -114
  78. data/doc/files/pkg/t2-web-0_0_4/bin/t2_webapp_rb.html +0 -115
  79. data/doc/files/pkg/t2-web-0_0_5/bin/t2_webapp_rb.html +0 -115
  80. data/doc/fr_class_index.html +0 -27
  81. data/doc/fr_file_index.html +0 -32
  82. data/doc/fr_method_index.html +0 -76
  83. data/doc/index.html +0 -24
  84. data/doc/rdoc/CHANGES.html +0 -170
  85. data/doc/rdoc/LICENSE.html +0 -111
  86. data/doc/rdoc/README.html +0 -142
  87. data/doc/rdoc/created.rid +0 -4
  88. data/doc/rdoc/images/brick.png +0 -0
  89. data/doc/rdoc/images/brick_link.png +0 -0
  90. data/doc/rdoc/images/bug.png +0 -0
  91. data/doc/rdoc/images/bullet_black.png +0 -0
  92. data/doc/rdoc/images/bullet_toggle_minus.png +0 -0
  93. data/doc/rdoc/images/bullet_toggle_plus.png +0 -0
  94. data/doc/rdoc/images/date.png +0 -0
  95. data/doc/rdoc/images/find.png +0 -0
  96. data/doc/rdoc/images/loadingAnimation.gif +0 -0
  97. data/doc/rdoc/images/macFFBgHack.png +0 -0
  98. data/doc/rdoc/images/package.png +0 -0
  99. data/doc/rdoc/images/page_green.png +0 -0
  100. data/doc/rdoc/images/page_white_text.png +0 -0
  101. data/doc/rdoc/images/page_white_width.png +0 -0
  102. data/doc/rdoc/images/plugin.png +0 -0
  103. data/doc/rdoc/images/ruby.png +0 -0
  104. data/doc/rdoc/images/tag_green.png +0 -0
  105. data/doc/rdoc/images/wrench.png +0 -0
  106. data/doc/rdoc/images/wrench_orange.png +0 -0
  107. data/doc/rdoc/images/zoom.png +0 -0
  108. data/doc/rdoc/index.html +0 -115
  109. data/doc/rdoc/js/darkfish.js +0 -116
  110. data/doc/rdoc/js/jquery.js +0 -32
  111. data/doc/rdoc/js/quicksearch.js +0 -114
  112. data/doc/rdoc/js/thickbox-compressed.js +0 -10
  113. data/doc/rdoc/rdoc.css +0 -763
  114. data/doc/rdoc-style.css +0 -208
  115. data/public/images/info.png +0 -0
data/doc/classes/WebT2App.src/M000046.html DELETED
@@ -1,18 +0,0 @@
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- <?xml version="1.0" encoding="iso-8859-1"?>
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- <!DOCTYPE html
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- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-
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- <html>
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- <head>
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- <title>generate_header_table (WebT2App)</title>
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- <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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- <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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- </head>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.5/bin/t2_webapp.rb, line 75</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_header_table</span>(<span class="ruby-identifier">my_exp_wkf</span>, <span class="ruby-identifier">my_exp_usr</span>)
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- <span class="ruby-value str">&quot; &lt;div id='header'&gt;\n &lt;table class='header'&gt;\n &lt;tr&gt;\n &lt;td&gt;\n &lt;img alt='NBIC logo' src='/images/nbic_logo.gif' /&gt;\n &lt;/td&gt;\n &lt;td&gt;\n &lt;table class='header-title'&gt;\n &lt;tr&gt;\n &lt;td class='header-title'&gt;Workflow: \#{@my_exp_wkf.title}&lt;/td&gt;\n &lt;/tr&gt;\n &lt;tr&gt;\n &lt;td class='right'&gt;workflow by \#{@my_exp_usr.name}&lt;/td&gt;\n\n &lt;/tr&gt;\n &lt;/table&gt;\n &lt;/td&gt;\n &lt;td&gt;\n &lt;img alt='LUMC logo' class='right' src='/images/lumc_logo2.png' /&gt;\n &lt;/td&gt;\n &lt;/tr&gt;\n &lt;/table&gt;\n &lt;/div&gt;\n&quot;</span>
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- <span class="ruby-keyword kw">end</span></pre>
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- </body>
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- </html>
data/doc/classes/WebT2App.src/M000047.html DELETED
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- <?xml version="1.0" encoding="iso-8859-1"?>
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- <!DOCTYPE html
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- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-
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- <html>
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- <head>
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- <title>generate_label_tooltip (WebT2App)</title>
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- <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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- <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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- </head>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.5/bin/t2_webapp.rb, line 106</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_label_tooltip</span>(<span class="ruby-identifier">input</span>)
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- <span class="ruby-value str">&quot;Description: &quot;</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-constant">CGI</span><span class="ruby-operator">::</span><span class="ruby-identifier">unescapeHTML</span>(<span class="ruby-identifier">input</span>.<span class="ruby-identifier">descriptions</span>[<span class="ruby-value">0</span>])
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- <span class="ruby-keyword kw">end</span></pre>
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- </body>
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- </html>
data/doc/classes/WebT2App.src/M000048.html DELETED
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- <?xml version="1.0" encoding="iso-8859-1"?>
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- <!DOCTYPE html
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- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-
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- <html>
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- <head>
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- <title>generate_textarea_tooltip (WebT2App)</title>
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- <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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- <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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- </head>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.5/bin/t2_webapp.rb, line 111</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_textarea_tooltip</span>(<span class="ruby-identifier">input</span>)
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- <span class="ruby-value str">&quot;Example: &quot;</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-constant">CGI</span><span class="ruby-operator">::</span><span class="ruby-identifier">unescapeHTML</span>(<span class="ruby-identifier">input</span>.<span class="ruby-identifier">examples</span>[<span class="ruby-value">0</span>])
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- <span class="ruby-keyword kw">end</span></pre>
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- </body>
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data/doc/classes/WebT2App.src/M000049.html DELETED
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- <?xml version="1.0" encoding="iso-8859-1"?>
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- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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- <html>
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- <head>
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- <title>generate_data_navigation_frame (WebT2App)</title>
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- <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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- <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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- </head>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.5/bin/t2_webapp.rb, line 117</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_data_navigation_frame</span>(<span class="ruby-identifier">my_exp_wkf</span>, <span class="ruby-identifier">uuid</span>, <span class="ruby-identifier">wid</span>, <span class="ruby-identifier">wkf_version</span>, <span class="ruby-identifier">t2_server</span>, <span class="ruby-identifier">finished_execution</span>)
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-
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- <span class="ruby-identifier">data_navigation_frame</span> = <span class="ruby-value str">&quot;&lt;html&gt;&lt;head&gt;&lt;link href='/css/results_navigation.css' rel='stylesheet'/&gt;&lt;/head&gt;&lt;body&gt;&lt;table&gt;&quot;</span>
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- <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">my_exp_wkf</span>.<span class="ruby-identifier">outputs</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">&gt;=</span><span class="ruby-value">1</span>
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- <span class="ruby-identifier">my_exp_wkf</span>.<span class="ruby-identifier">outputs</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">output</span><span class="ruby-operator">|</span>
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- <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;tr&gt;&quot;</span>
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- <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">finished_execution</span>
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- <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot;&lt;td&gt;&lt;a href='javascript:void(0);' onclick='parent.getSampleOutput(\\\&quot;#{t2_server}\\\&quot;, \\\&quot;#{uuid}\\\&quot;, &quot;</span> <span class="ruby-operator">&lt;&lt;</span>
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- <span class="ruby-node">&quot;\\\&quot;#{output.name}\\\&quot;, \\\&quot;#{wid}\\\&quot;, \\\&quot;#{wkf_version}\\\&quot;);'&gt;#{output.name}&lt;/a&gt;&lt;/td&gt;&lt;td&gt;&lt;/td&gt;&quot;</span>
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- <span class="ruby-keyword kw">else</span>
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- <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot;&lt;td&gt;#{output.name}&lt;/td&gt;&lt;td&gt;&lt;img src='/images/snake_transparent.gif' alt='Loading Content...'&gt;&lt;/td&gt;&quot;</span>
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- <span class="ruby-keyword kw">end</span>
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- <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;/tr&gt;&quot;</span>
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- <span class="ruby-keyword kw">end</span>
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- <span class="ruby-keyword kw">end</span>
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- <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;/table&gt;&lt;/body&gt;&lt;/html&gt;&quot;</span>
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- <span class="ruby-keyword kw">end</span></pre>
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data/doc/classes/WebT2App.src/M000050.html DELETED
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- <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.5/bin/t2_webapp.rb, line 137</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_html_result</span>(<span class="ruby-identifier">data</span>)
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- <span class="ruby-identifier">html</span> = <span class="ruby-value str">&quot;&quot;</span>
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- <span class="ruby-comment cmt">#p data</span>
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- <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">data</span>.<span class="ruby-identifier">instance_of?</span> <span class="ruby-constant">Array</span>
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- <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>.<span class="ruby-identifier">flatten</span>.<span class="ruby-identifier">join</span>(<span class="ruby-value str">'&lt;br&gt;'</span>)
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- <span class="ruby-keyword kw">elsif</span> <span class="ruby-identifier">data</span>.<span class="ruby-identifier">instance_of?</span> <span class="ruby-constant">String</span>
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- <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-regexp re">/[\n]/</span>, <span class="ruby-value str">'&lt;br&gt;'</span>)
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- <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>
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- <h1>t2_webapp.rb</h1>
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- <table class="header-table">
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- <tr class="top-aligned-row">
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- <td><strong>Path:</strong></td>
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- <td>bin/t2_webapp.rb
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- </td>
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- </tr>
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- <tr class="top-aligned-row">
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- <td><strong>Last Update:</strong></td>
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- <td>Mon Feb 13 15:18:41 +0100 2012</td>
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- </tr>
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- </table>
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- </div>
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- <!-- banner header -->
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- <h3 class="section-bar">Required files</h3>
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- <div class="name-list">
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- rubygems&nbsp;&nbsp;
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- sinatra&nbsp;&nbsp;
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- haml&nbsp;&nbsp;
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- open-uri&nbsp;&nbsp;
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- rest-client&nbsp;&nbsp;
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- t2-server&nbsp;&nbsp;
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- myexperiment-rest&nbsp;&nbsp;
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- cgi&nbsp;&nbsp;
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- </div>
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- rubygems&nbsp;&nbsp;
77
- sinatra&nbsp;&nbsp;
78
- haml&nbsp;&nbsp;
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- rest-open-uri&nbsp;&nbsp;
80
- rest-client&nbsp;&nbsp;
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- t2-server&nbsp;&nbsp;
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- myexperiment-rest&nbsp;&nbsp;
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- rubygems&nbsp;&nbsp;
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- sinatra&nbsp;&nbsp;
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- haml&nbsp;&nbsp;
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- rest-client&nbsp;&nbsp;
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- <div class="name-list">
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- rubygems&nbsp;&nbsp;
77
- sinatra&nbsp;&nbsp;
78
- haml&nbsp;&nbsp;
79
- rest-open-uri&nbsp;&nbsp;
80
- rest-client&nbsp;&nbsp;
81
- t2-server&nbsp;&nbsp;
82
- myexperiment-rest&nbsp;&nbsp;
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