t2-server 1.1.0 → 1.2.0

data/test/tc_xml_messages.rb

@@ -0,0 +1,201 @@
+# Copyright (c) 2014 The University of Manchester, UK.
+#
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+#  * Redistributions of source code must retain the above copyright notice,
+#    this list of conditions and the following disclaimer.
+#
+#  * Redistributions in binary form must reproduce the above copyright notice,
+#    this list of conditions and the following disclaimer in the documentation
+#    and/or other materials provided with the distribution.
+#
+#  * Neither the names of The University of Manchester nor the names of its
+#    contributors may be used to endorse or promote products derived from this
+#    software without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
+#
+# Author: Robert Haines
+
+require 't2-server'
+
+require 'helpers/test-xml'
+
+class TestXMLMessages < Test::Unit::TestCase
+
+  def setup
+    @test = TestXML.new
+  end
+
+  def test_mkdir_fragment
+    dir_name = "new_dir"
+    fragment = @test.xml_mkdir_fragment(dir_name)
+
+    root = get_and_check_root(fragment, "mkdir")
+
+    assert_equal [], root.children
+    assert_equal "", root.content
+
+    assert root.attributes?
+    assert_equal dir_name, root["name"]
+  end
+
+  def test_upload_fragment
+    file_name = "/file/name.txt"
+    file_data = "test & data"
+    fragment = @test.xml_upload_fragment(file_name, file_data)
+
+    root = get_and_check_root(fragment, "upload")
+
+    assert_equal file_data, root.content
+
+    assert root.attributes?
+    assert_equal file_name, root["name"]
+  end
+
+  def test_input_value_fragment
+    input_value = "test & input"
+    fragment = @test.xml_input_fragment(input_value)
+
+    root = get_and_check_root(fragment, "runInput")
+
+    refute root.attributes?
+
+    check_child_nodes(root, "value" => input_value)
+  end
+
+  def test_input_file_fragment
+    file_name = "/file/name.txt"
+    fragment = @test.xml_input_fragment(file_name, :file)
+
+    root = get_and_check_root(fragment, "runInput")
+
+    refute root.attributes?
+
+    check_child_nodes(root, "file" => file_name)
+  end
+
+  def test_trust_fragment
+    cert_data = "test contents"
+    cert_type = "X509"
+    fragment = @test.xml_trust_fragment(cert_data, cert_type)
+
+    root = get_and_check_root(fragment, "trustedIdentity")
+
+    refute root.attributes?
+
+    check_child_nodes(root, "certificateBytes" => cert_data,
+      "fileType" => cert_type)
+  end
+
+  def test_permissions_fragment
+    username = "taverna"
+    permission = "destroy"
+    fragment = @test.xml_permissions_fragment(username, permission)
+
+    root = get_and_check_root(fragment, "permissionUpdate")
+
+    refute root.attributes?
+
+    check_child_nodes(root, "userName" => username,
+      "permission" => permission)
+  end
+
+  def test_password_cred_fragment
+    service = "http://example.com/service"
+    username = "taverna"
+    password = "T@v3rNa!"
+    fragment = @test.xml_password_cred_fragment(service, username, password)
+
+    root = get_and_check_root(fragment, "credential")
+
+    refute root.attributes?
+
+    check_child_nodes(root, "userpass" => {
+      "serviceURI" => service,
+      "username" => username,
+      "password" => password
+      }
+    )
+  end
+
+  def test_keypair_cred_fragment
+    service = "http://example.com/service"
+    cred_name = "test_name"
+    cred_bytes = "example cred"
+    cred_type = "PKCS12"
+    password = "T@v3rNa!"
+    fragment = @test.xml_keypair_cred_fragment(service, cred_name, cred_bytes,
+      cred_type, password)
+
+    root = get_and_check_root(fragment, "credential")
+
+    refute root.attributes?
+
+    check_child_nodes(root, "keypair" => {
+      "serviceURI" => service,
+      "credentialName" => cred_name,
+      "credentialBytes" => cred_bytes,
+      "fileType" => cred_type,
+      "unlockPassword" => password
+      }
+    )
+  end
+
+  private
+
+  def check_child_nodes(node, children)
+    names = children.keys
+    num_children = 0
+
+    node.each_element do |child|
+      num_children += 1
+      assert names.include?(child.name)
+      if children[child.name].instance_of?(Hash)
+        check_child_nodes(child, children[child.name])
+      else
+        assert_equal children[child.name], child.content
+      end
+    end
+
+    assert_equal names.length, num_children
+  end
+
+  def get_and_check_root(fragment, root_name)
+    assert fragment.instance_of?(String)
+
+    doc = LibXML::XML::Document.string(fragment)
+    root = doc.root
+    assert_equal root_name, root.name
+    check_namespaces(root)
+
+    root
+  end
+
+  def check_namespaces(node)
+    namespaces = node.namespaces
+    assert_nil namespaces.default
+
+    ns_list = namespaces.definitions
+    assert_equal 4, ns_list.count
+
+    ns_list.each do |ns|
+      assert T2Server::XML::Namespaces::MAP.has_key?(ns.prefix)
+      assert T2Server::XML::Namespaces::MAP.has_value?(ns.href)
+    end
+  end
+
+end

data/test/ts_t2server.rb

@@ -30,6 +30,9 @@
 #
 # Author: Robert Haines
 
+require 'coveralls'
+Coveralls.wear!
+
 require 'test/unit'
 require 't2-server'
 
@@ -37,32 +40,11 @@ require 't2-server'
 # command line.
 if ARGV.size != 0
   address = ARGV[0]
-
-  unless ARGV[1].nil?
-    user1, pass1 = ARGV[1].split(":")
-    user1 = nil if pass1.nil?
-  end
-
-  unless ARGV[2].nil?
-    user2, pass2 = ARGV[2].split(":")
-    user2 = nil if pass2.nil?
-  end
-
-  puts "Using server at: #{address}"
-  puts "   With user(s): #{user1} #{user2}" if user1
+  user1 = ARGV[1]
+  user2 = ARGV[2]
 
   # Clear the commandline arguments so that we don't confuse runit.
   ARGV.clear
-elsif !ENV["TRAVIS"]
-  # get a server address to test if not in travis - 30 second timeout
-  print "\nPlease supply a valid Taverna 2 Server address.\n\nNOTE that " +
-    "these tests will fully load the server and then delete all the runs " +
-    "that it has permission to do so - if you are not using security ALL " +
-    "runs will be deleted!\n(leave blank to skip tests): "
-  $stdout.flush
-  if select([$stdin], [], [], 30)
-    address = $stdin.gets.chomp
-  end
 end
 
 # If address is still unset then set it to something.
@@ -70,26 +52,38 @@ address ||= ""
 
 # the testcases to run
 require 'tc_util'
+require 'tc_xml_messages'
 require 'tc_params'
+require 'tc_connection'
 require 'tc_server_version'
-unless address == ""
+require 'tc_credentials'
+
+# Only run tests against a live server if we have an address for one.
+if address == ""
+  $uri = URI.parse("https://localhost/taverna")
+  $userinfo = "test:test"
+  $userinfo1 = "test1:test1"
+  $creds = T2Server::HttpBasic.parse($userinfo)
+  $creds1 = T2Server::HttpBasic.parse($userinfo1)
+  $conn_params = T2Server::DefaultConnectionParameters.new
+
+  require 'tc_connection_exceptions'
+  require 'tc_server'
+  require 'tc_ports'
+  require 'tc_perms'
+  require 'tc_run'
+  require 'tc_interaction'
+  require 'tc_admin'
+else
   $uri, $creds = T2Server::Util.strip_uri_credentials(address)
 
   # override creds if passed in on the command line
-  $creds = T2Server::HttpBasic.new(user1, pass1) if user1
-  $creds1 = T2Server::HttpBasic.new(user2, pass2) if user2
+  $creds = T2Server::HttpBasic.parse(user1) if user1
+  $creds1 = T2Server::HttpBasic.parse(user2) if user2
 
-  $wkf_pass   = "test/workflows/pass_through.t2flow"
-  $wkf_lists  = "test/workflows/empty_list.t2flow"
-  $wkf_l_v    = "test/workflows/list_and_value.t2flow"
-  $wkf_xml    = "test/workflows/xml_xpath.t2flow"
-  $wkf_fail   = "test/workflows/always_fail.t2flow"
-  $wkf_errors = "test/workflows/list_with_errors.t2flow"
-  $wkf_no_io  = "test/workflows/no-ports.t2flow"
-  $wkf_miss_o = "test/workflows/missing_outputs.t2flow"
-  $list_input = "test/workflows/empty_list_input.baclava"
-  $file_input = "test/workflows/in.txt"
-  $file_strs  = "test/workflows/strings.txt"
+  puts "Running tests against a live server at: #{$uri}"
+  print "   With user(s): #{$creds.username}" if $creds
+  puts $creds1.nil? ? "" : " #{$creds1.username}"
 
   if $uri.scheme == "http"
     $conn_params = T2Server::DefaultConnectionParameters.new
@@ -102,15 +96,15 @@ unless address == ""
     # This will drop out before further tests are run
     T2Server::Server.new($uri, $conn_params)
 
-    require 'tc_server'
-    require 'tc_run'
-    require 'tc_admin'
-    require 'tc_secure'
-    require 'tc_misc'
+    require 'tc_server_live'
+    require 'tc_run_live'
+    require 'tc_admin_live'
+    require 'tc_secure_live'
+    require 'tc_misc_live'
 
     # if we have two sets of credentials we can run permissions tests
     if $creds1
-      require 'tc_perms'
+      require 'tc_perms_live'
     end
   rescue RuntimeError => e
     puts "!!!\nNo tests on the remote server could be run.\n#{e.message}\n!!!"

data/test/workflows/secure/heater-pk.pem

@@ -1,20 +1,26 @@
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+cPeKaIZ0Sa7AYwIDAQABo4IBcDCCAWwwHwYDVR0jBBgwFoAUDL2TaAzz3qujSWsr
+N1dH6pDjue0wHQYDVR0OBBYEFEKp10paTphB4PCL5kK5C/aVod4+MA4GA1UdDwEB
+/wQEAwIFoDAMBgNVHRMBAf8EAjAAMB0GA1UdJQQWMBQGCCsGAQUFBwMBBggrBgEF
+BQcDAjAiBgNVHSAEGzAZMA0GCysGAQQBsjEBAgIdMAgGBmeBDAECATA6BgNVHR8E
+MzAxMC+gLaArhilodHRwOi8vY3JsLnRjcy50ZXJlbmEub3JnL1RFUkVOQVNTTENB
+LmNybDBtBggrBgEFBQcBAQRhMF8wNQYIKwYBBQUHMAKGKWh0dHA6Ly9jcnQudGNz
+LnRlcmVuYS5vcmcvVEVSRU5BU1NMQ0EuY3J0MCYGCCsGAQUFBzABhhpodHRwOi8v
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data/version.yml

@@ -1,4 +1,4 @@
 ---
   :major: 1
-  :minor: 1
+  :minor: 2
   :patch: 0

metadata

@@ -1,8 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: t2-server
 version: !ruby/object:Gem::Version
-  version: 1.1.0
-  prerelease: 
+  version: 1.2.0
 platform: ruby
 authors:
 - Robert Haines
@@ -10,12 +9,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-04-23 00:00:00.000000000 Z
+date: 2014-09-24 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -23,7 +21,6 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -31,7 +28,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -39,7 +35,6 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -47,7 +42,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: rdoc
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -55,7 +49,6 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -63,7 +56,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: launchy
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -71,7 +63,6 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -79,7 +70,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: hirb
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -87,15 +77,41 @@ dependencies:
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
         version: '0.7'
+- !ruby/object:Gem::Dependency
+  name: webmock
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.17'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.17'
+- !ruby/object:Gem::Dependency
+  name: coveralls
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
 - !ruby/object:Gem::Dependency
   name: net-http-persistent
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -103,7 +119,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -111,7 +126,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: taverna-baclava
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -119,7 +133,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -127,7 +140,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: ratom
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -135,7 +147,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -143,7 +154,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: libxml-ruby
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -151,7 +161,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ~>
       - !ruby/object:Gem::Version
@@ -173,6 +182,9 @@ extra_rdoc_files:
 - CHANGES.rdoc
 files:
 - .gitignore
+- .ruby-env
+- .ruby-gemset
+- .ruby-version
 - .travis.yml
 - CHANGES.rdoc
 - Gemfile
@@ -200,20 +212,53 @@ files:
 - lib/t2-server/util.rb
 - lib/t2-server/version.rb
 - lib/t2-server/xml.rb
-- lib/t2-server/xml/fragments.rb
 - lib/t2-server/xml/methods.rb
 - lib/t2-server/xml/namespaces.rb
 - lib/t2-server/xml/xpath_cache.rb
 - t2-server.gemspec
+- test/helpers/fake-run.rb
+- test/helpers/test-cache.rb
+- test/helpers/test-xml.rb
+- test/helpers/timezone.rb
+- test/mocked-server-responses/.gitattributes
+- test/mocked-server-responses/get-admin.raw
+- test/mocked-server-responses/get-rest-policy-runlimit.raw
+- test/mocked-server-responses/get-rest-policy.raw
+- test/mocked-server-responses/get-rest-run-input-expected.raw
+- test/mocked-server-responses/get-rest-run-input.raw
+- test/mocked-server-responses/get-rest-run-interaction-feed-0.raw
+- test/mocked-server-responses/get-rest-run-interaction-feed-1.raw
+- test/mocked-server-responses/get-rest-run-interaction-feed-2.raw
+- test/mocked-server-responses/get-rest-run-name.raw
+- test/mocked-server-responses/get-rest-run-output-list-errors.raw
+- test/mocked-server-responses/get-rest-run-output.raw
+- test/mocked-server-responses/get-rest-run-security-permissions.raw
+- test/mocked-server-responses/get-rest-run-security.raw
+- test/mocked-server-responses/get-rest-run.raw
+- test/mocked-server-responses/get-rest-runs.raw
+- test/mocked-server-responses/get-rest.raw
+- test/mocked-server-responses/log.txt
+- test/mocked-server-responses/mocks.rb
+- test/mocked-server-responses/options-admin-allownew.raw
 - test/tc_admin.rb
-- test/tc_misc.rb
+- test/tc_admin_live.rb
+- test/tc_connection.rb
+- test/tc_connection_exceptions.rb
+- test/tc_credentials.rb
+- test/tc_interaction.rb
+- test/tc_misc_live.rb
 - test/tc_params.rb
 - test/tc_perms.rb
+- test/tc_perms_live.rb
+- test/tc_ports.rb
 - test/tc_run.rb
-- test/tc_secure.rb
+- test/tc_run_live.rb
+- test/tc_secure_live.rb
 - test/tc_server.rb
+- test/tc_server_live.rb
 - test/tc_server_version.rb
 - test/tc_util.rb
+- test/tc_xml_messages.rb
 - test/ts_t2server.rb
 - test/workflows/always_fail.t2flow
 - test/workflows/empty_list.t2flow
@@ -239,6 +284,7 @@ files:
 homepage: http://www.taverna.org.uk/
 licenses:
 - BSD
+metadata: {}
 post_install_message: 
 rdoc_options:
 - -N
@@ -247,22 +293,83 @@ rdoc_options:
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
   - - ! '>='
     - !ruby/object:Gem::Version
-      version: '0'
+      version: 1.9.3
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
   - - ! '>='
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.21
+rubygems_version: 2.2.2
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: Support for interacting with Taverna 2 Server.
 test_files:
+- test/helpers/fake-run.rb
+- test/helpers/test-cache.rb
+- test/helpers/test-xml.rb
+- test/helpers/timezone.rb
+- test/mocked-server-responses/.gitattributes
+- test/mocked-server-responses/get-admin.raw
+- test/mocked-server-responses/get-rest-policy-runlimit.raw
+- test/mocked-server-responses/get-rest-policy.raw
+- test/mocked-server-responses/get-rest-run-input-expected.raw
+- test/mocked-server-responses/get-rest-run-input.raw
+- test/mocked-server-responses/get-rest-run-interaction-feed-0.raw
+- test/mocked-server-responses/get-rest-run-interaction-feed-1.raw
+- test/mocked-server-responses/get-rest-run-interaction-feed-2.raw
+- test/mocked-server-responses/get-rest-run-name.raw
+- test/mocked-server-responses/get-rest-run-output-list-errors.raw
+- test/mocked-server-responses/get-rest-run-output.raw
+- test/mocked-server-responses/get-rest-run-security-permissions.raw
+- test/mocked-server-responses/get-rest-run-security.raw
+- test/mocked-server-responses/get-rest-run.raw
+- test/mocked-server-responses/get-rest-runs.raw
+- test/mocked-server-responses/get-rest.raw
+- test/mocked-server-responses/log.txt
+- test/mocked-server-responses/mocks.rb
+- test/mocked-server-responses/options-admin-allownew.raw
+- test/tc_admin.rb
+- test/tc_admin_live.rb
+- test/tc_connection.rb
+- test/tc_connection_exceptions.rb
+- test/tc_credentials.rb
+- test/tc_interaction.rb
+- test/tc_misc_live.rb
+- test/tc_params.rb
+- test/tc_perms.rb
+- test/tc_perms_live.rb
+- test/tc_ports.rb
+- test/tc_run.rb
+- test/tc_run_live.rb
+- test/tc_secure_live.rb
+- test/tc_server.rb
+- test/tc_server_live.rb
+- test/tc_server_version.rb
+- test/tc_util.rb
+- test/tc_xml_messages.rb
 - test/ts_t2server.rb
+- test/workflows/always_fail.t2flow
+- test/workflows/empty_list.t2flow
+- test/workflows/empty_list_input.baclava
+- test/workflows/in.txt
+- test/workflows/list_and_value.t2flow
+- test/workflows/list_with_errors.t2flow
+- test/workflows/missing_outputs.t2flow
+- test/workflows/no-ports.t2flow
+- test/workflows/pass_through.t2flow
+- test/workflows/secure/basic-http.t2flow
+- test/workflows/secure/basic-https.t2flow
+- test/workflows/secure/client-https.t2flow
+- test/workflows/secure/digest-http.t2flow
+- test/workflows/secure/digest-https.t2flow
+- test/workflows/secure/heater-pk.pem
+- test/workflows/secure/user-cert.p12
+- test/workflows/secure/ws-http.t2flow
+- test/workflows/secure/ws-https.t2flow
+- test/workflows/strings.txt
+- test/workflows/xml_xpath.t2flow