t2-server 1.1.0 → 1.2.0
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- checksums.yaml +15 -0
- data/.gitignore +1 -0
- data/.ruby-env +1 -0
- data/.ruby-gemset +1 -0
- data/.ruby-version +1 -0
- data/.travis.yml +7 -1
- data/CHANGES.rdoc +49 -0
- data/README.rdoc +10 -8
- data/bin/t2-delete-runs +0 -3
- data/lib/t2-server-cli.rb +16 -9
- data/lib/t2-server/exceptions.rb +7 -19
- data/lib/t2-server/net/connection.rb +14 -6
- data/lib/t2-server/net/credentials.rb +12 -1
- data/lib/t2-server/net/parameters.rb +3 -3
- data/lib/t2-server/port.rb +12 -29
- data/lib/t2-server/run.rb +54 -35
- data/lib/t2-server/server.rb +3 -4
- data/lib/t2-server/xml.rb +0 -1
- data/lib/t2-server/xml/methods.rb +97 -4
- data/t2-server.gemspec +4 -1
- data/test/helpers/fake-run.rb +47 -0
- data/test/helpers/test-cache.rb +49 -0
- data/test/helpers/test-xml.rb +36 -0
- data/test/helpers/timezone.rb +39 -0
- data/test/mocked-server-responses/.gitattributes +1 -0
- data/test/mocked-server-responses/get-admin.raw +6 -0
- data/test/mocked-server-responses/get-rest-policy-runlimit.raw +6 -0
- data/test/mocked-server-responses/get-rest-policy.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-input-expected.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-input.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-interaction-feed-0.raw +11 -0
- data/test/mocked-server-responses/get-rest-run-interaction-feed-1.raw +92 -0
- data/test/mocked-server-responses/get-rest-run-interaction-feed-2.raw +80 -0
- data/test/mocked-server-responses/get-rest-run-name.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-output-list-errors.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-output.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-security-permissions.raw +6 -0
- data/test/mocked-server-responses/get-rest-run-security.raw +6 -0
- data/test/mocked-server-responses/get-rest-run.raw +6 -0
- data/test/mocked-server-responses/get-rest-runs.raw +6 -0
- data/test/mocked-server-responses/get-rest.raw +6 -0
- data/test/mocked-server-responses/log.txt +1 -0
- data/test/mocked-server-responses/mocks.rb +107 -0
- data/test/mocked-server-responses/options-admin-allownew.raw +7 -0
- data/test/tc_admin.rb +52 -24
- data/test/tc_admin_live.rb +66 -0
- data/test/tc_connection.rb +87 -0
- data/test/tc_connection_exceptions.rb +86 -0
- data/test/tc_credentials.rb +73 -0
- data/test/tc_interaction.rb +182 -0
- data/test/{tc_misc.rb → tc_misc_live.rb} +3 -1
- data/test/tc_params.rb +82 -4
- data/test/tc_perms.rb +54 -101
- data/test/tc_perms_live.rb +150 -0
- data/test/tc_ports.rb +192 -0
- data/test/tc_run.rb +333 -350
- data/test/tc_run_live.rb +453 -0
- data/test/{tc_secure.rb → tc_secure_live.rb} +30 -29
- data/test/tc_server.rb +115 -42
- data/test/tc_server_live.rb +92 -0
- data/test/tc_server_version.rb +19 -0
- data/test/tc_xml_messages.rb +201 -0
- data/test/ts_t2server.rb +37 -43
- data/test/workflows/secure/heater-pk.pem +24 -18
- data/test/workflows/secure/user-cert.p12 +0 -0
- data/version.yml +1 -1
- metadata +136 -29
- data/lib/t2-server/xml/fragments.rb +0 -78
data/lib/t2-server/server.rb
CHANGED
@@ -223,7 +223,7 @@ module T2Server
|
|
223
223
|
|
224
224
|
# :stopdoc:
|
225
225
|
def mkdir(uri, dir, credentials = nil)
|
226
|
-
@connection.POST(uri,
|
226
|
+
@connection.POST(uri, xml_mkdir_fragment(dir), "application/xml",
|
227
227
|
credentials)
|
228
228
|
end
|
229
229
|
|
@@ -248,9 +248,8 @@ module T2Server
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|
248
248
|
@connection.PUT(put_uri, data, "application/octet-stream", credentials)
|
249
249
|
else
|
250
250
|
contents = Base64.encode64(data)
|
251
|
-
@connection.POST(uri,
|
252
|
-
|
253
|
-
credentials)
|
251
|
+
@connection.POST(uri, xml_upload_fragment(remote_name, contents),
|
252
|
+
"application/xml", credentials)
|
254
253
|
end
|
255
254
|
end
|
256
255
|
|
data/lib/t2-server/xml.rb
CHANGED
@@ -42,10 +42,6 @@ module T2Server
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|
42
42
|
LibXML::XML::Document.string(string)
|
43
43
|
end
|
44
44
|
|
45
|
-
def xml_text_node(text)
|
46
|
-
LibXML::XML::Node.new_text(text)
|
47
|
-
end
|
48
|
-
|
49
45
|
def xml_first_child(node)
|
50
46
|
node.first
|
51
47
|
end
|
@@ -95,6 +91,103 @@ module T2Server
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|
95
91
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|
96
92
|
uris
|
97
93
|
end
|
94
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+
|
95
|
+
def xml_input_fragment(input, type = :value)
|
96
|
+
node = create_node("nsr:runInput", ["nsr:#{type}", input.to_s])
|
97
|
+
create_document(node).to_s
|
98
|
+
end
|
99
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+
|
100
|
+
def xml_mkdir_fragment(name)
|
101
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+
node = create_node("nsr:mkdir", { "nsr:name" => name })
|
102
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+
create_document(node).to_s
|
103
|
+
end
|
104
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+
|
105
|
+
def xml_upload_fragment(name, data)
|
106
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+
node = create_node("nsr:upload", { "nsr:name" => name }, data)
|
107
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+
create_document(node).to_s
|
108
|
+
end
|
109
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+
|
110
|
+
def xml_permissions_fragment(username, permission)
|
111
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+
node = create_node("nsr:permissionUpdate",
|
112
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+
["nsr:userName", username], ["nsr:permission", permission])
|
113
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+
create_document(node).to_s
|
114
|
+
end
|
115
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+
|
116
|
+
def xml_password_cred_fragment(uri, username, password)
|
117
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+
node = create_node("nsr:credential",
|
118
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+
["nss:userpass",
|
119
|
+
["nss:serviceURI", uri],
|
120
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+
["nss:username", username],
|
121
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+
["nss:password", password]
|
122
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+
]
|
123
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+
)
|
124
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+
|
125
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+
create_document(node).to_s
|
126
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+
end
|
127
|
+
|
128
|
+
def xml_keypair_cred_fragment(uri, name, key, type, password)
|
129
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+
node = create_node("nsr:credential",
|
130
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+
["nss:keypair",
|
131
|
+
["nss:serviceURI", uri],
|
132
|
+
["nss:credentialName", name],
|
133
|
+
["nss:credentialBytes", key],
|
134
|
+
["nss:fileType", type],
|
135
|
+
["nss:unlockPassword", password]
|
136
|
+
]
|
137
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+
)
|
138
|
+
|
139
|
+
create_document(node).to_s
|
140
|
+
end
|
141
|
+
|
142
|
+
def xml_trust_fragment(contents, type)
|
143
|
+
node = create_node("nss:trustedIdentity",
|
144
|
+
["nss:certificateBytes", contents], ["nss:fileType", type])
|
145
|
+
create_document(node).to_s
|
146
|
+
end
|
147
|
+
|
148
|
+
private
|
149
|
+
|
150
|
+
def create_document(root)
|
151
|
+
doc = LibXML::XML::Document.new
|
152
|
+
doc.root = root
|
153
|
+
|
154
|
+
Namespaces::MAP.each do |prefix, uri|
|
155
|
+
LibXML::XML::Namespace.new(root, prefix, uri)
|
156
|
+
end
|
157
|
+
|
158
|
+
doc
|
159
|
+
end
|
160
|
+
|
161
|
+
def create_node(name, *rest)
|
162
|
+
contents = nil
|
163
|
+
attributes = {}
|
164
|
+
children = []
|
165
|
+
|
166
|
+
rest.each do |param|
|
167
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+
case param
|
168
|
+
when Hash
|
169
|
+
attributes = param
|
170
|
+
when Array
|
171
|
+
children.push(param)
|
172
|
+
else
|
173
|
+
contents = param
|
174
|
+
end
|
175
|
+
end
|
176
|
+
|
177
|
+
node = LibXML::XML::Node.new(name, contents)
|
178
|
+
|
179
|
+
attributes.each do |attr, value|
|
180
|
+
LibXML::XML::Attr.new(node, attr, value)
|
181
|
+
end
|
182
|
+
|
183
|
+
children.each do |c|
|
184
|
+
n = create_node(c.shift, *c)
|
185
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+
node << n
|
186
|
+
end
|
187
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+
|
188
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+
node
|
189
|
+
end
|
190
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+
|
98
191
|
end
|
99
192
|
end
|
100
193
|
end
|
data/t2-server.gemspec
CHANGED
@@ -48,17 +48,20 @@ Gem::Specification.new do |s|
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|
48
48
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s.require_path = "lib"
|
49
49
|
s.bindir = "bin"
|
50
50
|
s.files = `git ls-files`.split($/)
|
51
|
+
s.test_files = `git ls-files -- test/*`.split($/)
|
51
52
|
s.executables = ["t2-delete-runs", "t2-run-workflow", "t2-server-info",
|
52
53
|
"t2-get-output", "t2-server-admin"]
|
53
|
-
s.test_file = "test/ts_t2server.rb"
|
54
54
|
s.has_rdoc = true
|
55
55
|
s.extra_rdoc_files = ["README.rdoc", "LICENCE.rdoc", "CHANGES.rdoc"]
|
56
56
|
s.rdoc_options = ["-N", "--tab-width=2", "--main=README.rdoc"]
|
57
|
+
s.required_ruby_version = ">= 1.9.3"
|
57
58
|
s.add_development_dependency('rake', '~> 10.0')
|
58
59
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s.add_development_dependency('bundler', '~> 1.5')
|
59
60
|
s.add_development_dependency('rdoc', '~> 4.1')
|
60
61
|
s.add_development_dependency('launchy', '~> 2.2')
|
61
62
|
s.add_development_dependency('hirb', '~> 0.7')
|
63
|
+
s.add_development_dependency('webmock', '~> 1.17')
|
64
|
+
s.add_development_dependency('coveralls')
|
62
65
|
s.add_runtime_dependency('net-http-persistent', '~> 2.6')
|
63
66
|
s.add_runtime_dependency('taverna-baclava', '~> 1.0')
|
64
67
|
s.add_runtime_dependency('ratom', '~> 0.8.2')
|
@@ -0,0 +1,47 @@
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+
# Copyright (c) 2014 The University of Manchester, UK.
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2
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#
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# All rights reserved.
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#
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5
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# Redistribution and use in source and binary forms, with or without
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6
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# modification, are permitted provided that the following conditions are met:
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7
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#
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8
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# * Redistributions of source code must retain the above copyright notice,
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9
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+
# this list of conditions and the following disclaimer.
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10
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+
#
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11
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+
# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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13
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# and/or other materials provided with the distribution.
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+
#
|
15
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+
# * Neither the names of The University of Manchester nor the names of its
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+
# contributors may be used to endorse or promote products derived from this
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17
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+
# software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
|
24
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# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
|
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# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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+
# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
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# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
|
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#
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31
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+
# Author: Robert Haines
|
32
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+
|
33
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+
# A fake run class that can be "initialized" and use "baclava" as needed.
|
34
|
+
class FakeRun
|
35
|
+
def initialize(init = true, baclava = false)
|
36
|
+
@init = init
|
37
|
+
@baclava = baclava
|
38
|
+
end
|
39
|
+
|
40
|
+
def initialized?
|
41
|
+
@init
|
42
|
+
end
|
43
|
+
|
44
|
+
def baclava_input?
|
45
|
+
@baclava
|
46
|
+
end
|
47
|
+
end
|
@@ -0,0 +1,49 @@
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+
# Copyright (c) 2010-2014 The University of Manchester, UK.
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2
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#
|
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# All rights reserved.
|
4
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+
#
|
5
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+
# Redistribution and use in source and binary forms, with or without
|
6
|
+
# modification, are permitted provided that the following conditions are met:
|
7
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+
#
|
8
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+
# * Redistributions of source code must retain the above copyright notice,
|
9
|
+
# this list of conditions and the following disclaimer.
|
10
|
+
#
|
11
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+
# * Redistributions in binary form must reproduce the above copyright notice,
|
12
|
+
# this list of conditions and the following disclaimer in the documentation
|
13
|
+
# and/or other materials provided with the distribution.
|
14
|
+
#
|
15
|
+
# * Neither the names of The University of Manchester nor the names of its
|
16
|
+
# contributors may be used to endorse or promote products derived from this
|
17
|
+
# software without specific prior written permission.
|
18
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+
#
|
19
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+
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
|
20
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+
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
|
21
|
+
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
|
22
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+
# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
|
23
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+
# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
|
24
|
+
# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
|
25
|
+
# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
|
26
|
+
# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
|
27
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+
# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
28
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+
# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
29
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+
# POSSIBILITY OF SUCH DAMAGE.
|
30
|
+
#
|
31
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+
# Author: Robert Haines
|
32
|
+
|
33
|
+
# A class to test data streaming.
|
34
|
+
class TestCache
|
35
|
+
attr_reader :data
|
36
|
+
|
37
|
+
def initialize
|
38
|
+
@data = ""
|
39
|
+
end
|
40
|
+
|
41
|
+
def write(data)
|
42
|
+
@data += data
|
43
|
+
data.size
|
44
|
+
end
|
45
|
+
|
46
|
+
def size
|
47
|
+
return @data.size
|
48
|
+
end
|
49
|
+
end
|
@@ -0,0 +1,36 @@
|
|
1
|
+
# Copyright (c) 2014 The University of Manchester, UK.
|
2
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+
#
|
3
|
+
# All rights reserved.
|
4
|
+
#
|
5
|
+
# Redistribution and use in source and binary forms, with or without
|
6
|
+
# modification, are permitted provided that the following conditions are met:
|
7
|
+
#
|
8
|
+
# * Redistributions of source code must retain the above copyright notice,
|
9
|
+
# this list of conditions and the following disclaimer.
|
10
|
+
#
|
11
|
+
# * Redistributions in binary form must reproduce the above copyright notice,
|
12
|
+
# this list of conditions and the following disclaimer in the documentation
|
13
|
+
# and/or other materials provided with the distribution.
|
14
|
+
#
|
15
|
+
# * Neither the names of The University of Manchester nor the names of its
|
16
|
+
# contributors may be used to endorse or promote products derived from this
|
17
|
+
# software without specific prior written permission.
|
18
|
+
#
|
19
|
+
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
|
20
|
+
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
|
21
|
+
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
|
22
|
+
# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
|
23
|
+
# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
|
24
|
+
# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
|
25
|
+
# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
|
26
|
+
# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
|
27
|
+
# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
28
|
+
# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
29
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+
# POSSIBILITY OF SUCH DAMAGE.
|
30
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+
#
|
31
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+
# Author: Robert Haines
|
32
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+
|
33
|
+
# A class to simplify testing the XML methods.
|
34
|
+
class TestXML
|
35
|
+
include T2Server::XML::Methods
|
36
|
+
end
|
@@ -0,0 +1,39 @@
|
|
1
|
+
# Copyright (c) 2014 The University of Manchester, UK.
|
2
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+
#
|
3
|
+
# All rights reserved.
|
4
|
+
#
|
5
|
+
# Redistribution and use in source and binary forms, with or without
|
6
|
+
# modification, are permitted provided that the following conditions are met:
|
7
|
+
#
|
8
|
+
# * Redistributions of source code must retain the above copyright notice,
|
9
|
+
# this list of conditions and the following disclaimer.
|
10
|
+
#
|
11
|
+
# * Redistributions in binary form must reproduce the above copyright notice,
|
12
|
+
# this list of conditions and the following disclaimer in the documentation
|
13
|
+
# and/or other materials provided with the distribution.
|
14
|
+
#
|
15
|
+
# * Neither the names of The University of Manchester nor the names of its
|
16
|
+
# contributors may be used to endorse or promote products derived from this
|
17
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# software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# Author: Robert Haines
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# For time-based tests to run we have to mangle the timezone to match the
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# local server. Sigh.
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def timezone
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z = Time.zone_offset(Time.now.zone) / 3600
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s = z.abs < 10 ? "0#{z.abs.to_s}" : z.abs.to_s
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z < 0 ? "-#{s}" : "+#{s}"
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end
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1
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*.raw -text
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@@ -0,0 +1,6 @@
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HTTP/1.1 200 OK
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Server: Apache-Coyote/1.1
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Content-Type: application/xml
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Content-Length: 604
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?><admin:description xmlns:ts="http://ns.taverna.org.uk/2010/xml/server/" xmlns:ds="http://www.w3.org/2000/09/xmldsig#" xmlns:ur="http://schema.ogf.org/urf/2003/09/urf" xmlns:feed="http://ns.taverna.org.uk/2010/xml/server/feed/" xmlns:ts-soap="http://ns.taverna.org.uk/2010/xml/server/soap/" xmlns:ts-rest="http://ns.taverna.org.uk/2010/xml/server/rest/" xmlns:admin="http://ns.taverna.org.uk/2010/xml/server/admin/" xmlns:xlink="http://www.w3.org/1999/xlink"><admin:allowNew xlink:href="https://localhost/taverna/admin/allowNew"/></admin:description>
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@@ -0,0 +1,6 @@
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HTTP/1.1 200 OK
|
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Server: Apache-Coyote/1.1
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Content-Type: application/xml
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Content-Length: 1262
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?><ts-rest:policyDescription xmlns:ts="http://ns.taverna.org.uk/2010/xml/server/" xmlns:feed="http://ns.taverna.org.uk/2010/xml/server/feed/" xmlns:port="http://ns.taverna.org.uk/2010/port/" xmlns:ts-soap="http://ns.taverna.org.uk/2010/xml/server/soap/" xmlns:ts-rest="http://ns.taverna.org.uk/2010/xml/server/rest/" xmlns:admin="http://ns.taverna.org.uk/2010/xml/server/admin/" xmlns:xlink="http://www.w3.org/1999/xlink" ts:serverVersion="2.5.4" ts:serverRevision="d285a5fbfa86b6e7e8e33baffb54830ecec256af (tag: jenkins-taverna-server-2.5-auto-263)" ts:serverBuildTimestamp="25.04.2014 @ 10:54:50 BST"><ts-rest:runLimit xlink:href="https://localhost/taverna/rest/policy/runLimit"/><ts-rest:operatingLimit xlink:href="https://localhost/taverna/rest/policy/operatingLimit"/><ts-rest:permittedWorkflows xlink:href="https://localhost/taverna/rest/policy/permittedWorkflows"/><ts-rest:permittedListenerTypes xlink:href="https://localhost/taverna/rest/policy/permittedListenerTypes"/><ts-rest:enabledNotificationFabrics xlink:href="https://localhost/taverna/rest/policy/enabledNotificationFabrics"/><ts-rest:capabilities xlink:href="https://localhost/taverna/rest/policy/capabilities"/></ts-rest:policyDescription>
|
@@ -0,0 +1,6 @@
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1
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+
HTTP/1.1 200 OK
|
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Server: Apache-Coyote/1.1
|
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Content-Type: application/xml
|
4
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Content-Length: 578
|
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+
|
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?><port:inputDescription xmlns:port="http://ns.taverna.org.uk/2010/port/" xmlns:run="http://ns.taverna.org.uk/2010/run/" xmlns:xlink="http://www.w3.org/1999/xlink" port:workflowId="" port:workflowRun="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/input/expected" port:workflowRunId="a341b87f-25cc-4dfd-be36-f5b073a6ba74"><port:input xlink:href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/input/expected/input/IN" port:name="IN" port:depth="0"/></port:inputDescription>
|
@@ -0,0 +1,6 @@
|
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1
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+
HTTP/1.1 200 OK
|
2
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Server: Apache-Coyote/1.1
|
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Content-Type: application/xml
|
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Content-Length: 906
|
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?><ts-rest:runInputs xmlns:ts="http://ns.taverna.org.uk/2010/xml/server/" xmlns:feed="http://ns.taverna.org.uk/2010/xml/server/feed/" xmlns:port="http://ns.taverna.org.uk/2010/port/" xmlns:ts-soap="http://ns.taverna.org.uk/2010/xml/server/soap/" xmlns:ts-rest="http://ns.taverna.org.uk/2010/xml/server/rest/" xmlns:admin="http://ns.taverna.org.uk/2010/xml/server/admin/" xmlns:xlink="http://www.w3.org/1999/xlink" ts:serverVersion="2.5.4" ts:serverRevision="d285a5fbfa86b6e7e8e33baffb54830ecec256af (tag: jenkins-taverna-server-2.5-auto-263)" ts:serverBuildTimestamp="25.04.2014 @ 10:54:50 BST"><ts-rest:expected xlink:href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/input/expected"/><ts-rest:baclava xlink:href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/input/baclava"/></ts-rest:runInputs>
|
@@ -0,0 +1,11 @@
|
|
1
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+
HTTP/1.1 200 OK
|
2
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+
Server: Apache-Coyote/1.1
|
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Content-Type: application/atom+xml; type=feed;charset=UTF-8
|
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Transfer-Encoding: chunked
|
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<?xml version='1.0' encoding='UTF-8'?>
|
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<feed xmlns="http://www.w3.org/2005/Atom">
|
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<title type="text">Interactions for Taverna Run "Multi_interactor"</title>
|
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|
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<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/interaction" rel="self"/>
|
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+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74" rel="workflowrun"/>
|
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</feed>
|
@@ -0,0 +1,92 @@
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1
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HTTP/1.1 200 OK
|
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+
Server: Apache-Coyote/1.1
|
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+
Content-Type: application/atom+xml; type=feed;charset=UTF-8
|
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Transfer-Encoding: chunked
|
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|
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<?xml version='1.0' encoding='UTF-8'?>
|
7
|
+
<feed xmlns="http://www.w3.org/2005/Atom">
|
8
|
+
<title type="text">Interactions for Taverna Run "Multi_interactor"</title>
|
9
|
+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/interaction" rel="self"/>
|
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|
+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74" rel="workflowrun"/>
|
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|
+
<entry xmlns:interaction="http://ns.taverna.org.uk/2012/interaction">
|
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+
|
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+
<id>urn:uuid:2ba41de9-73d7-4e7f-99b8-0a71e03b75b7</id>
|
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|
+
|
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|
+
<published>2014-05-25T15:09:13.688Z</published>
|
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|
+
|
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|
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<updated>2014-05-25T15:09:13.688Z</updated>
|
18
|
+
|
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|
+
<author>
|
20
|
+
|
21
|
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<name>Taverna</name>
|
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|
+
</author>
|
23
|
+
|
24
|
+
<title type="text">Interaction from Taverna for 966ac40e-6c2a-4650-b094-f6c14d893de6:facade0:Multi_interactor:ask:invocation6</title>
|
25
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+
|
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<interaction:run-id>a341b87f-25cc-4dfd-be36-f5b073a6ba74</interaction:run-id>
|
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|
+
|
28
|
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<interaction:path>ask</interaction:path>
|
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+
|
30
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+
<interaction:count>0</interaction:count>
|
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+
|
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<interaction:id>db4c26e742a14bba93356a473e314ce4</interaction:id>
|
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+
|
34
|
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<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/wd/interactions/interactiondb4c26e742a14bba93356a473e314ce4.html" rel="presentation"/>
|
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|
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<content type="xhtml">
|
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|
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<div xmlns="http://www.w3.org/1999/xhtml">
|
39
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|
40
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+
<p>
|
41
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+
|
42
|
+
<a href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/wd/interactions/interactiondb4c26e742a14bba93356a473e314ce4.html">Open: https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/wd/interactions/interactiondb4c26e742a14bba93356a473e314ce4.html</a>
|
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</p>
|
44
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+
</div>
|
45
|
+
</content>
|
46
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+
|
47
|
+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/interaction/entry_1" rel="self"/>
|
48
|
+
|
49
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+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74" rel="workflowrun"/>
|
50
|
+
</entry>
|
51
|
+
<updated>2014-05-25T15:09:13.688Z</updated>
|
52
|
+
<entry xmlns:interaction="http://ns.taverna.org.uk/2012/interaction">
|
53
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+
|
54
|
+
<id>urn:uuid:7eb364c8-3462-4299-afcf-8362a56e94f7</id>
|
55
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+
|
56
|
+
<published>2014-05-25T15:09:13.894Z</published>
|
57
|
+
|
58
|
+
<updated>2014-05-25T15:09:13.894Z</updated>
|
59
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+
|
60
|
+
<author>
|
61
|
+
|
62
|
+
<name>Taverna</name>
|
63
|
+
</author>
|
64
|
+
|
65
|
+
<title type="text">Interaction from Taverna for 966ac40e-6c2a-4650-b094-f6c14d893de6:facade0:Multi_interactor:Nested_workflow:invocation3:facade1:Workflow10:Interaction:invocation7</title>
|
66
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+
|
67
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+
<interaction:run-id>a341b87f-25cc-4dfd-be36-f5b073a6ba74</interaction:run-id>
|
68
|
+
|
69
|
+
<interaction:path>Nested_workflow:Interaction</interaction:path>
|
70
|
+
|
71
|
+
<interaction:count>0</interaction:count>
|
72
|
+
|
73
|
+
<interaction:id>d1dfbdb616ae42598d2987837ffaa332</interaction:id>
|
74
|
+
|
75
|
+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/wd/interactions/interactiond1dfbdb616ae42598d2987837ffaa332.html" rel="presentation"/>
|
76
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+
|
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+
<content type="xhtml">
|
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+
|
79
|
+
<div xmlns="http://www.w3.org/1999/xhtml">
|
80
|
+
|
81
|
+
<p>
|
82
|
+
|
83
|
+
<a href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/wd/interactions/interactiond1dfbdb616ae42598d2987837ffaa332.html">Open: https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/wd/interactions/interactiond1dfbdb616ae42598d2987837ffaa332.html</a>
|
84
|
+
</p>
|
85
|
+
</div>
|
86
|
+
</content>
|
87
|
+
|
88
|
+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74/interaction/entry_2" rel="self"/>
|
89
|
+
|
90
|
+
<link href="https://localhost/taverna/rest/runs/a341b87f-25cc-4dfd-be36-f5b073a6ba74" rel="workflowrun"/>
|
91
|
+
</entry>
|
92
|
+
</feed>
|