stash-merritt 0.0.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/.gitignore +193 -0
- data/.rubocop.yml +32 -0
- data/.ruby-version +1 -0
- data/.travis.yml +12 -0
- data/Gemfile +6 -0
- data/Gemfile.lock +326 -0
- data/LICENSE.md +22 -0
- data/README.md +53 -0
- data/Rakefile +49 -0
- data/lib/datacite/mapping/datacite_xml_factory.rb +212 -0
- data/lib/stash/merritt/ezid_helper.rb +50 -0
- data/lib/stash/merritt/module_info.rb +12 -0
- data/lib/stash/merritt/repository.rb +17 -0
- data/lib/stash/merritt/submission_job.rb +90 -0
- data/lib/stash/merritt/submission_package/data_one_manifest_builder.rb +41 -0
- data/lib/stash/merritt/submission_package/merritt_datacite_builder.rb +22 -0
- data/lib/stash/merritt/submission_package/merritt_delete_builder.rb +25 -0
- data/lib/stash/merritt/submission_package/merritt_oaidc_builder.rb +130 -0
- data/lib/stash/merritt/submission_package/stash_wrapper_builder.rb +59 -0
- data/lib/stash/merritt/submission_package.rb +125 -0
- data/lib/stash/merritt/sword_helper.rb +58 -0
- data/lib/stash/merritt.rb +5 -0
- data/lib/stash.rb +5 -0
- data/spec/.rubocop.yml +10 -0
- data/spec/config/app_config.yml +3 -0
- data/spec/config/database.yml +7 -0
- data/spec/config/licenses.yml +18 -0
- data/spec/data/archive/mrt-datacite.xml +121 -0
- data/spec/data/archive/mrt-dataone-manifest.txt +32 -0
- data/spec/data/archive/mrt-oaidc.xml +38 -0
- data/spec/data/archive/stash-wrapper.xml +213 -0
- data/spec/data/archive.zip +0 -0
- data/spec/data/dc4-with-funding-references.xml +123 -0
- data/spec/db/datacite/mapping/datacite_xml_factory_spec.rb +56 -0
- data/spec/db/stash/merritt/merritt_oaidc_builder_spec.rb +72 -0
- data/spec/db/stash/merritt/submission_package_spec.rb +174 -0
- data/spec/db/stash/merritt/sword_helper_spec.rb +162 -0
- data/spec/db_spec_helper.rb +31 -0
- data/spec/rspec_custom_matchers.rb +92 -0
- data/spec/spec_helper.rb +86 -0
- data/spec/unit/stash/merritt/ezid_helper_spec.rb +88 -0
- data/spec/unit/stash/merritt/repository_spec.rb +19 -0
- data/spec/unit/stash/merritt/submission_job_spec.rb +127 -0
- data/spec/util/resource_builder.rb +333 -0
- data/stash-merritt.gemspec +48 -0
- data/stash-merritt.iml +147 -0
- data/stash-merritt.ipr +127 -0
- data/travis-local-deps.sh +43 -0
- metadata +337 -0
checksums.yaml
ADDED
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---
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SHA1:
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metadata.gz: bf3299ac7ab5dfacd5f34d68f94f58985126cc1a
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data.tar.gz: 199ad43c3ff3149474c5fa96096afa9b7aac6715
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SHA512:
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metadata.gz: d3810a1472c76152187acaa66e9b2c294c324deb3ccd3a40361b772d10492cfc22a54bb7ae0be10565220b6f8b4d568e947325f757e824df5613d6f86bcc70bd
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data.tar.gz: ee05c454262f4ce76e86ef138a8243374fb03a52587f97f4e1cab2e863d858e26ea655c3bbdacccca63836406a8fb63f40dbcc4a1b56fde65fbd5291b7da5510
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data/.gitignore
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#### joe made this: http://goel.io/joe
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#### ruby ####
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*.gem
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*.rbc
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/.config
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/coverage/
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/InstalledFiles
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/pkg/
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/spec/reports/
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/spec/examples.txt
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/test/tmp/
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/test/version_tmp/
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/tmp/
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# Used by dotenv library to load environment variables.
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# .env
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## Specific to RubyMotion:
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.dat*
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.repl_history
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build/
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*.bridgesupport
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build-iPhoneOS/
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build-iPhoneSimulator/
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## Specific to RubyMotion (use of CocoaPods):
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#
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# We recommend against adding the Pods directory to your .gitignore. However
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# you should judge for yourself, the pros and cons are mentioned at:
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# https://guides.cocoapods.org/using/using-cocoapods.html#should-i-check-the-pods-directory-into-source-control
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#
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# vendor/Pods/
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## Documentation cache and generated files:
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/.yardoc/
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/_yardoc/
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/doc/
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/rdoc/
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## Environment normalization:
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/.bundle/
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/vendor/bundle
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/lib/bundler/man/
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# for a library or gem, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# Gemfile.lock
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# .ruby-version
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# .ruby-gemset
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# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
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.rvmrc
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#### rails ####
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*.rbc
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capybara-*.html
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.rspec
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/log
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/tmp
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/db/*.sqlite3
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/db/*.sqlite3-journal
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/public/system
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/coverage/
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/spec/tmp
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**.orig
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rerun.txt
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pickle-email-*.html
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# TODO Comment out this rule if you are OK with secrets being uploaded to the repo
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config/initializers/secret_token.rb
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# Only include if you have production secrets in this file, which is no longer a Rails default
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# config/secrets.yml
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# dotenv
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# TODO Comment out this rule if environment variables can be committed
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.env
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## Environment normalization:
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/.bundle
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/vendor/bundle
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# these should all be checked in to normalize the environment:
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# Gemfile.lock, .ruby-version, .ruby-gemset
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# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
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.rvmrc
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# if using bower-rails ignore default bower_components path bower.json files
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/vendor/assets/bower_components
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*.bowerrc
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bower.json
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|
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# Ignore pow environment settings
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.powenv
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+
|
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# Ignore Byebug command history file.
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.byebug_history
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#### emacs ####
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# -*- mode: gitignore; -*-
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*~
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\#*\#
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/.emacs.desktop
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106
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/.emacs.desktop.lock
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*.elc
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auto-save-list
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tramp
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.\#*
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# Org-mode
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.org-id-locations
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*_archive
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# flymake-mode
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*_flymake.*
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# eshell files
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/eshell/history
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121
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/eshell/lastdir
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# elpa packages
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/elpa/
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# reftex files
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*.rel
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# AUCTeX auto folder
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/auto/
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# cask packages
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.cask/
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dist/
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135
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# Flycheck
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137
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flycheck_*.el
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138
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+
|
139
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# server auth directory
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140
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/server/
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+
|
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# projectiles files
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143
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.projectile
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+
|
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#### jetbrains ####
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# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and Webstorm
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# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
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148
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|
149
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# User-specific stuff:
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150
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.idea/workspace.xml
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151
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.idea/tasks.xml
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152
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.idea/dictionaries
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153
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.idea/vcs.xml
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154
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.idea/jsLibraryMappings.xml
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155
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+
|
156
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# Sensitive or high-churn files:
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157
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.idea/dataSources.ids
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158
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.idea/dataSources.xml
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159
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.idea/dataSources.local.xml
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160
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.idea/sqlDataSources.xml
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.idea/dynamic.xml
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.idea/uiDesigner.xml
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163
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# Gradle:
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165
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.idea/gradle.xml
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166
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.idea/libraries
|
167
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+
|
168
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# Mongo Explorer plugin:
|
169
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.idea/mongoSettings.xml
|
170
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+
|
171
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## File-based project format:
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*.iws
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## Plugin-specific files:
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175
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# IntelliJ
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/out/
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# mpeltonen/sbt-idea plugin
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.idea_modules/
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181
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# JIRA plugin
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183
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atlassian-ide-plugin.xml
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184
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+
|
185
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# Crashlytics plugin (for Android Studio and IntelliJ)
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186
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com_crashlytics_export_strings.xml
|
187
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crashlytics.properties
|
188
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crashlytics-build.properties
|
189
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fabric.properties
|
190
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+
|
191
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# Raketasks
|
192
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.rakeTasks
|
193
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+
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data/.rubocop.yml
ADDED
@@ -0,0 +1,32 @@
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1
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AllCops:
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2
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# Suppress complaints about post-2.0 syntax
|
3
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TargetRubyVersion: 2.2
|
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|
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# Disable line-length check; it's too easy for the cure to be worse than the disease
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Metrics/LineLength:
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Enabled: False
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+
|
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# Disable problematic module documentation check (see https://github.com/bbatsov/rubocop/issues/947)
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Style/Documentation:
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Enabled: false
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# Allow one line around class body (Style/EmptyLines will still disallow two or more)
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Style/EmptyLinesAroundClassBody:
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Enabled: false
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# Allow one line around module body (Style/EmptyLines will still disallow two or more)
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Style/EmptyLinesAroundModuleBody:
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Enabled: false
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# Allow one line around block body (Style/EmptyLines will still disallow two or more)
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Style/EmptyLinesAroundBlockBody:
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Enabled: false
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|
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# Unclear why it's a good idea to give parameters semantically meaningless names
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Style/SingleLineBlockParams:
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Enabled: false
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|
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# These 'set' methods aren't conventional accessors, but Rubocop doesn't know that
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Style/AccessorMethodName:
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Exclude:
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- 'spec/util/resource_builder.rb'
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data/.ruby-version
ADDED
@@ -0,0 +1 @@
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1
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2.2.5
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data/.travis.yml
ADDED
data/Gemfile
ADDED
data/Gemfile.lock
ADDED
@@ -0,0 +1,326 @@
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1
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PATH
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remote: ../stash_engines/stash_datacite
|
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specs:
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4
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stash_datacite (0.0.5)
|
5
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datacite-mapping (~> 0.2, >= 0.2.5)
|
6
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kaminari
|
7
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leaflet-rails
|
8
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rails (~> 4.2.4)
|
9
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responders (~> 2.0)
|
10
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rubyzip (>= 1.0.0)
|
11
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stash-wrapper (~> 0.1, >= 0.1.11.1)
|
12
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stash_ezid_datacite (~> 0.1)
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13
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|
14
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PATH
|
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remote: ../stash_engines/stash_engine
|
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specs:
|
17
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stash_engine (0.0.17)
|
18
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amoeba (~> 3.0.0)
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19
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carrierwave (~> 0.10.0)
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concurrent-ruby (~> 1.0)
|
21
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filesize (~> 0.1.1)
|
22
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font-awesome-rails
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23
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jquery-fileupload-rails (~> 0.4.6)
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24
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jquery-rails
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25
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jquery-turbolinks
|
26
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jquery-ui-rails
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27
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kaminari
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28
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omniauth (~> 1.2.2)
|
29
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omniauth-google-oauth2 (~> 0.2.9)
|
30
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omniauth-orcid (~> 1.0.21)
|
31
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omniauth-shibboleth (~> 1.2.1)
|
32
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rails (~> 4.2.4)
|
33
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redcarpet (~> 3.3)
|
34
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+
stash-sword (~> 0.1, >= 0.1.5)
|
35
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+
wicked_pdf (~> 1.1.0)
|
36
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wkhtmltopdf-binary (~> 0.12.3.1)
|
37
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+
|
38
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PATH
|
39
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remote: .
|
40
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specs:
|
41
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+
stash-merritt (0.0.1)
|
42
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+
rubyzip (~> 1.1)
|
43
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+
stash_datacite
|
44
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+
stash_engine
|
45
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+
stash_ezid_datacite (~> 0.1)
|
46
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+
|
47
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+
GEM
|
48
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remote: https://rubygems.org/
|
49
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specs:
|
50
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actionmailer (4.2.7.1)
|
51
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+
actionpack (= 4.2.7.1)
|
52
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+
actionview (= 4.2.7.1)
|
53
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activejob (= 4.2.7.1)
|
54
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mail (~> 2.5, >= 2.5.4)
|
55
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rails-dom-testing (~> 1.0, >= 1.0.5)
|
56
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actionpack (4.2.7.1)
|
57
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actionview (= 4.2.7.1)
|
58
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+
activesupport (= 4.2.7.1)
|
59
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rack (~> 1.6)
|
60
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rack-test (~> 0.6.2)
|
61
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rails-dom-testing (~> 1.0, >= 1.0.5)
|
62
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rails-html-sanitizer (~> 1.0, >= 1.0.2)
|
63
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+
actionview (4.2.7.1)
|
64
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+
activesupport (= 4.2.7.1)
|
65
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+
builder (~> 3.1)
|
66
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+
erubis (~> 2.7.0)
|
67
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+
rails-dom-testing (~> 1.0, >= 1.0.5)
|
68
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rails-html-sanitizer (~> 1.0, >= 1.0.2)
|
69
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+
activejob (4.2.7.1)
|
70
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activesupport (= 4.2.7.1)
|
71
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globalid (>= 0.3.0)
|
72
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activemodel (4.2.7.1)
|
73
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activesupport (= 4.2.7.1)
|
74
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builder (~> 3.1)
|
75
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activerecord (4.2.7.1)
|
76
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activemodel (= 4.2.7.1)
|
77
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+
activesupport (= 4.2.7.1)
|
78
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+
arel (~> 6.0)
|
79
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+
activesupport (4.2.7.1)
|
80
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i18n (~> 0.7)
|
81
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json (~> 1.7, >= 1.7.7)
|
82
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+
minitest (~> 5.1)
|
83
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+
thread_safe (~> 0.3, >= 0.3.4)
|
84
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+
tzinfo (~> 1.1)
|
85
|
+
addressable (2.5.0)
|
86
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+
public_suffix (~> 2.0, >= 2.0.2)
|
87
|
+
amoeba (3.0.0)
|
88
|
+
activerecord (>= 3.2.6)
|
89
|
+
arel (6.0.4)
|
90
|
+
ast (2.3.0)
|
91
|
+
builder (3.2.3)
|
92
|
+
carrierwave (0.10.0)
|
93
|
+
activemodel (>= 3.2.0)
|
94
|
+
activesupport (>= 3.2.0)
|
95
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json (>= 1.7)
|
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|
+
mime-types (>= 1.16)
|
97
|
+
colorize (0.8.1)
|
98
|
+
concurrent-ruby (1.0.4)
|
99
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+
crack (0.4.3)
|
100
|
+
safe_yaml (~> 1.0.0)
|
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+
database_cleaner (1.5.3)
|
102
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+
datacite-mapping (0.2.5)
|
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+
typesafe_enum (~> 0.1, >= 0.1.7)
|
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+
xml-mapping_extensions (~> 0.4, >= 0.4.7)
|
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|
+
diff-lcs (1.3)
|
106
|
+
diffy (3.1.0)
|
107
|
+
docile (1.1.5)
|
108
|
+
domain_name (0.5.20161129)
|
109
|
+
unf (>= 0.0.5, < 1.0.0)
|
110
|
+
equivalent-xml (0.6.0)
|
111
|
+
nokogiri (>= 1.4.3)
|
112
|
+
erubis (2.7.0)
|
113
|
+
ezid-client (1.5.0)
|
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|
+
hashie (~> 3.4, >= 3.4.3)
|
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|
+
faraday (0.10.1)
|
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|
+
multipart-post (>= 1.2, < 3)
|
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|
+
filesize (0.1.1)
|
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|
+
font-awesome-rails (4.7.0.1)
|
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|
+
railties (>= 3.2, < 5.1)
|
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|
+
globalid (0.3.7)
|
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|
+
activesupport (>= 4.1.0)
|
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|
+
hashdiff (0.3.2)
|
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|
+
hashie (3.5.1)
|
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|
+
hirb (0.7.3)
|
125
|
+
http-cookie (1.0.3)
|
126
|
+
domain_name (~> 0.5)
|
127
|
+
i18n (0.8.0)
|
128
|
+
jquery-fileupload-rails (0.4.7)
|
129
|
+
actionpack (>= 3.1)
|
130
|
+
railties (>= 3.1)
|
131
|
+
sass (>= 3.2)
|
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|
+
jquery-rails (4.2.2)
|
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|
+
rails-dom-testing (>= 1, < 3)
|
134
|
+
railties (>= 4.2.0)
|
135
|
+
thor (>= 0.14, < 2.0)
|
136
|
+
jquery-turbolinks (2.1.0)
|
137
|
+
railties (>= 3.1.0)
|
138
|
+
turbolinks
|
139
|
+
jquery-ui-rails (6.0.1)
|
140
|
+
railties (>= 3.2.16)
|
141
|
+
json (1.8.6)
|
142
|
+
jwt (1.5.6)
|
143
|
+
kaminari (1.0.1)
|
144
|
+
activesupport (>= 4.1.0)
|
145
|
+
kaminari-actionview (= 1.0.1)
|
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|
+
kaminari-activerecord (= 1.0.1)
|
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|
+
kaminari-core (= 1.0.1)
|
148
|
+
kaminari-actionview (1.0.1)
|
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|
+
actionview
|
150
|
+
kaminari-core (= 1.0.1)
|
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|
+
kaminari-activerecord (1.0.1)
|
152
|
+
activerecord
|
153
|
+
kaminari-core (= 1.0.1)
|
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|
+
kaminari-core (1.0.1)
|
155
|
+
leaflet-rails (1.0.2)
|
156
|
+
loofah (2.0.3)
|
157
|
+
nokogiri (>= 1.5.9)
|
158
|
+
mail (2.6.4)
|
159
|
+
mime-types (>= 1.16, < 4)
|
160
|
+
mime-types (2.99.3)
|
161
|
+
mini_portile2 (2.1.0)
|
162
|
+
minitest (5.10.1)
|
163
|
+
multi_json (1.12.1)
|
164
|
+
multi_xml (0.6.0)
|
165
|
+
multipart-post (2.0.0)
|
166
|
+
mysql2 (0.4.5)
|
167
|
+
netrc (0.11.0)
|
168
|
+
nokogiri (1.7.0.1)
|
169
|
+
mini_portile2 (~> 2.1.0)
|
170
|
+
oauth2 (1.3.0)
|
171
|
+
faraday (>= 0.8, < 0.11)
|
172
|
+
jwt (~> 1.0)
|
173
|
+
multi_json (~> 1.3)
|
174
|
+
multi_xml (~> 0.5)
|
175
|
+
rack (>= 1.2, < 3)
|
176
|
+
omniauth (1.2.2)
|
177
|
+
hashie (>= 1.2, < 4)
|
178
|
+
rack (~> 1.0)
|
179
|
+
omniauth-google-oauth2 (0.2.10)
|
180
|
+
addressable (~> 2.3)
|
181
|
+
jwt (~> 1.0)
|
182
|
+
multi_json (~> 1.3)
|
183
|
+
omniauth (>= 1.1.1)
|
184
|
+
omniauth-oauth2 (~> 1.3.1)
|
185
|
+
omniauth-oauth2 (1.3.1)
|
186
|
+
oauth2 (~> 1.0)
|
187
|
+
omniauth (~> 1.2)
|
188
|
+
omniauth-orcid (1.0.38)
|
189
|
+
omniauth-oauth2 (~> 1.3.1)
|
190
|
+
omniauth-shibboleth (1.2.1)
|
191
|
+
omniauth (>= 1.0.0)
|
192
|
+
parser (2.3.3.1)
|
193
|
+
ast (~> 2.2)
|
194
|
+
powerpack (0.1.1)
|
195
|
+
public_suffix (2.0.5)
|
196
|
+
rack (1.6.5)
|
197
|
+
rack-test (0.6.3)
|
198
|
+
rack (>= 1.0)
|
199
|
+
rails (4.2.7.1)
|
200
|
+
actionmailer (= 4.2.7.1)
|
201
|
+
actionpack (= 4.2.7.1)
|
202
|
+
actionview (= 4.2.7.1)
|
203
|
+
activejob (= 4.2.7.1)
|
204
|
+
activemodel (= 4.2.7.1)
|
205
|
+
activerecord (= 4.2.7.1)
|
206
|
+
activesupport (= 4.2.7.1)
|
207
|
+
bundler (>= 1.3.0, < 2.0)
|
208
|
+
railties (= 4.2.7.1)
|
209
|
+
sprockets-rails
|
210
|
+
rails-deprecated_sanitizer (1.0.3)
|
211
|
+
activesupport (>= 4.2.0.alpha)
|
212
|
+
rails-dom-testing (1.0.8)
|
213
|
+
activesupport (>= 4.2.0.beta, < 5.0)
|
214
|
+
nokogiri (~> 1.6)
|
215
|
+
rails-deprecated_sanitizer (>= 1.0.1)
|
216
|
+
rails-html-sanitizer (1.0.3)
|
217
|
+
loofah (~> 2.0)
|
218
|
+
railties (4.2.7.1)
|
219
|
+
actionpack (= 4.2.7.1)
|
220
|
+
activesupport (= 4.2.7.1)
|
221
|
+
rake (>= 0.8.7)
|
222
|
+
thor (>= 0.18.1, < 2.0)
|
223
|
+
rainbow (2.2.1)
|
224
|
+
rake (10.5.0)
|
225
|
+
redcarpet (3.4.0)
|
226
|
+
responders (2.3.0)
|
227
|
+
railties (>= 4.2.0, < 5.1)
|
228
|
+
rest-client (2.0.0)
|
229
|
+
http-cookie (>= 1.0.2, < 2.0)
|
230
|
+
mime-types (>= 1.16, < 4.0)
|
231
|
+
netrc (~> 0.8)
|
232
|
+
rspec (3.5.0)
|
233
|
+
rspec-core (~> 3.5.0)
|
234
|
+
rspec-expectations (~> 3.5.0)
|
235
|
+
rspec-mocks (~> 3.5.0)
|
236
|
+
rspec-core (3.5.4)
|
237
|
+
rspec-support (~> 3.5.0)
|
238
|
+
rspec-expectations (3.5.0)
|
239
|
+
diff-lcs (>= 1.2.0, < 2.0)
|
240
|
+
rspec-support (~> 3.5.0)
|
241
|
+
rspec-mocks (3.5.0)
|
242
|
+
diff-lcs (>= 1.2.0, < 2.0)
|
243
|
+
rspec-support (~> 3.5.0)
|
244
|
+
rspec-support (3.5.0)
|
245
|
+
rubocop (0.47.1)
|
246
|
+
parser (>= 2.3.3.1, < 3.0)
|
247
|
+
powerpack (~> 0.1)
|
248
|
+
rainbow (>= 1.99.1, < 3.0)
|
249
|
+
ruby-progressbar (~> 1.7)
|
250
|
+
unicode-display_width (~> 1.0, >= 1.0.1)
|
251
|
+
ruby-progressbar (1.8.1)
|
252
|
+
rubyzip (1.2.0)
|
253
|
+
safe_yaml (1.0.4)
|
254
|
+
sass (3.4.23)
|
255
|
+
simplecov (0.9.2)
|
256
|
+
docile (~> 1.1.0)
|
257
|
+
multi_json (~> 1.0)
|
258
|
+
simplecov-html (~> 0.9.0)
|
259
|
+
simplecov-console (0.2.0)
|
260
|
+
colorize
|
261
|
+
hirb
|
262
|
+
simplecov
|
263
|
+
simplecov-html (0.9.0)
|
264
|
+
sprockets (3.7.1)
|
265
|
+
concurrent-ruby (~> 1.0)
|
266
|
+
rack (> 1, < 3)
|
267
|
+
sprockets-rails (3.2.0)
|
268
|
+
actionpack (>= 4.0)
|
269
|
+
activesupport (>= 4.0)
|
270
|
+
sprockets (>= 3.0.0)
|
271
|
+
stash-sword (0.1.5)
|
272
|
+
rest-client (~> 2.0, = 2.0.0)
|
273
|
+
typesafe_enum (~> 0.1, >= 0.1.7)
|
274
|
+
xml-mapping_extensions (~> 0.4, >= 0.4.1)
|
275
|
+
stash-wrapper (0.1.11.1)
|
276
|
+
typesafe_enum (~> 0.1, >= 0.1.7)
|
277
|
+
xml-mapping_extensions (~> 0.4, >= 0.4.2)
|
278
|
+
stash_ezid_datacite (0.1.5)
|
279
|
+
ezid-client (~> 1.5)
|
280
|
+
thor (0.19.4)
|
281
|
+
thread_safe (0.3.5)
|
282
|
+
turbolinks (5.0.1)
|
283
|
+
turbolinks-source (~> 5)
|
284
|
+
turbolinks-source (5.0.0)
|
285
|
+
typesafe_enum (0.1.7)
|
286
|
+
tzinfo (1.2.2)
|
287
|
+
thread_safe (~> 0.1)
|
288
|
+
unf (0.1.4)
|
289
|
+
unf_ext
|
290
|
+
unf_ext (0.0.7.2)
|
291
|
+
unicode-display_width (1.1.3)
|
292
|
+
webmock (1.24.6)
|
293
|
+
addressable (>= 2.3.6)
|
294
|
+
crack (>= 0.3.2)
|
295
|
+
hashdiff
|
296
|
+
wicked_pdf (1.1.0)
|
297
|
+
wkhtmltopdf-binary (0.12.3.1)
|
298
|
+
xml-mapping (0.10.0)
|
299
|
+
xml-mapping_extensions (0.4.7)
|
300
|
+
mime-types (~> 2.5)
|
301
|
+
typesafe_enum (~> 0.1, >= 0.1.5)
|
302
|
+
xml-mapping (~> 0.10)
|
303
|
+
yard (0.9.8)
|
304
|
+
|
305
|
+
PLATFORMS
|
306
|
+
ruby
|
307
|
+
|
308
|
+
DEPENDENCIES
|
309
|
+
bundler (~> 1.7)
|
310
|
+
database_cleaner (~> 1.5)
|
311
|
+
diffy (~> 3.1)
|
312
|
+
equivalent-xml (~> 0.6.0)
|
313
|
+
mysql2 (~> 0.3)
|
314
|
+
rake (~> 10.4)
|
315
|
+
rspec (~> 3.2)
|
316
|
+
rubocop (~> 0.47)
|
317
|
+
simplecov (~> 0.9.2)
|
318
|
+
simplecov-console (~> 0.2.0)
|
319
|
+
stash-merritt!
|
320
|
+
stash_datacite!
|
321
|
+
stash_engine!
|
322
|
+
webmock (~> 1.24)
|
323
|
+
yard (~> 0.8)
|
324
|
+
|
325
|
+
BUNDLED WITH
|
326
|
+
1.13.7
|
data/LICENSE.md
ADDED
@@ -0,0 +1,22 @@
|
|
1
|
+
The MIT License (MIT)
|
2
|
+
|
3
|
+
Copyright (c) 2017 The Regents of the University of California
|
4
|
+
|
5
|
+
Permission is hereby granted, free of charge, to any person obtaining
|
6
|
+
a copy of this software and associated documentation files (the
|
7
|
+
"Software"), to deal in the Software without restriction, including
|
8
|
+
without limitation the rights to use, copy, modify, merge, publish,
|
9
|
+
distribute, sublicense, and/or sell copies of the Software, and to
|
10
|
+
permit persons to whom the Software is furnished to do so, subject to
|
11
|
+
the following conditions:
|
12
|
+
|
13
|
+
The above copyright notice and this permission notice shall be
|
14
|
+
included in all copies or substantial portions of the Software.
|
15
|
+
|
16
|
+
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
17
|
+
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
|
18
|
+
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
19
|
+
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
|
20
|
+
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
|
21
|
+
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
|
22
|
+
WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
data/README.md
ADDED
@@ -0,0 +1,53 @@
|
|
1
|
+
# Stash::Merritt
|
2
|
+
|
3
|
+
[![Build Status](https://travis-ci.org/CDLUC3/stash-merritt.svg?branch=master)](https://travis-ci.org/CDLUC3/stash-merritt)
|
4
|
+
[![Code Climate](https://codeclimate.com/github/CDLUC3/stash-merritt.svg)](https://codeclimate.com/github/CDLUC3/stash-merritt)
|
5
|
+
[![Inline docs](http://inch-ci.org/github/CDLUC3/stash-merritt.svg)](http://inch-ci.org/github/CDLUC3/stash-merritt)
|
6
|
+
|
7
|
+
Packaging and
|
8
|
+
[SWORD 2.0](http://swordapp.github.io/SWORDv2-Profile/SWORDProfile.html)
|
9
|
+
deposit module for submitting
|
10
|
+
[Stash](https://github.com/CDLUC3/stash_engine) datasets to
|
11
|
+
[Merritt](http://www.cdlib.org/uc3/merritt/).
|
12
|
+
|
13
|
+
## Submission process
|
14
|
+
|
15
|
+
1. mint a new DOI with EZID, if not already present
|
16
|
+
1. generate:
|
17
|
+
- Datacite XML, including DOI
|
18
|
+
- Stash wrapper XML
|
19
|
+
- Dublin Core metadata XML
|
20
|
+
- DataONE manifest
|
21
|
+
- `mrt-delete.txt`, if needed
|
22
|
+
1. create ZIP archive including:
|
23
|
+
- Datacite XML
|
24
|
+
- Stash wrapper XML
|
25
|
+
- DublinCore XML
|
26
|
+
- DataONE manifest
|
27
|
+
- `mrt-delete.txt`, if present
|
28
|
+
- all user-uploaded files
|
29
|
+
1. submit to SWORD
|
30
|
+
1. determine landing page URL based on DOI
|
31
|
+
1. submit Datacite XML and landing page URL to EZID
|
32
|
+
1. clean up temporary files
|
33
|
+
|
34
|
+
## Development
|
35
|
+
|
36
|
+
### Test database creation
|
37
|
+
|
38
|
+
For compatibility with Travis, you need
|
39
|
+
|
40
|
+
1. a local MySQL installation
|
41
|
+
2. a `travis@localhost` user with no password
|
42
|
+
3. a `stash_merritt` database
|
43
|
+
4. `travis` to have all privileges on that database
|
44
|
+
|
45
|
+
This should look something like:
|
46
|
+
|
47
|
+
```
|
48
|
+
$ mysql -u root
|
49
|
+
mysql> create user 'travis'@'localhost';
|
50
|
+
mysql> create database 'stash_merritt' character set UTF8mb4 collate utf8mb4_bin;
|
51
|
+
mysql> use 'stash_merritt';
|
52
|
+
mysql> grant all on 'stash_merritt'.* to 'travis'@'localhost';
|
53
|
+
```
|
data/Rakefile
ADDED
@@ -0,0 +1,49 @@
|
|
1
|
+
# ------------------------------------------------------------
|
2
|
+
# RSpec
|
3
|
+
|
4
|
+
require 'rspec/core'
|
5
|
+
require 'rspec/core/rake_task'
|
6
|
+
|
7
|
+
namespace :spec do
|
8
|
+
desc 'Run all unit tests'
|
9
|
+
RSpec::Core::RakeTask.new(:unit) do |task|
|
10
|
+
task.rspec_opts = %w(--color --format documentation --order default)
|
11
|
+
task.pattern = 'unit/**/*_spec.rb'
|
12
|
+
end
|
13
|
+
|
14
|
+
desc 'Run all database tests'
|
15
|
+
RSpec::Core::RakeTask.new(:db) do |task|
|
16
|
+
task.rspec_opts = %w(--color --format documentation --order default)
|
17
|
+
task.pattern = 'db/**/*_spec.rb'
|
18
|
+
end
|
19
|
+
|
20
|
+
desc 'Run unit and database tests as single suite (for coverage)'
|
21
|
+
RSpec::Core::RakeTask.new(:unified) do |task|
|
22
|
+
task.rspec_opts = %w(--color --format documentation --order default)
|
23
|
+
task.pattern = '{db,unit}/**/*_spec.rb'
|
24
|
+
end
|
25
|
+
end
|
26
|
+
|
27
|
+
desc 'Run all tests'
|
28
|
+
task spec: %w(spec:unit spec:db)
|
29
|
+
|
30
|
+
# ------------------------------------------------------------
|
31
|
+
# Coverage
|
32
|
+
|
33
|
+
desc 'Run all unit tests with coverage'
|
34
|
+
task :coverage do
|
35
|
+
ENV['COVERAGE'] = 'true'
|
36
|
+
Rake::Task['spec:unified'].execute
|
37
|
+
end
|
38
|
+
|
39
|
+
# ------------------------------------------------------------
|
40
|
+
# RuboCop
|
41
|
+
|
42
|
+
require 'rubocop/rake_task'
|
43
|
+
RuboCop::RakeTask.new
|
44
|
+
|
45
|
+
# ------------------------------------------------------------
|
46
|
+
# Defaults
|
47
|
+
|
48
|
+
desc 'Run unit tests, check test coverage, run acceptance tests, check code style'
|
49
|
+
task default: [:coverage, :rubocop]
|