stamina 0.4.0 → 0.5.0
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- data/CHANGELOG.md +22 -5
- data/LICENCE.md +2 -2
- data/bin/stamina +1 -7
- data/lib/stamina.rb +10 -19
- metadata +54 -333
- data/.gemtest +0 -0
- data/Gemfile +0 -2
- data/Gemfile.lock +0 -37
- data/Manifest.txt +0 -16
- data/README.md +0 -78
- data/Rakefile +0 -23
- data/example/adl/automaton.adl +0 -49
- data/example/adl/sample.adl +0 -53
- data/example/basic/characteristic_sample.adl +0 -32
- data/example/basic/target.adl +0 -9
- data/example/competition/31_test.adl +0 -1500
- data/example/competition/31_training.adl +0 -1759
- data/lib/stamina/abbadingo.rb +0 -2
- data/lib/stamina/abbadingo/random_dfa.rb +0 -48
- data/lib/stamina/abbadingo/random_sample.rb +0 -146
- data/lib/stamina/adl.rb +0 -298
- data/lib/stamina/automaton.rb +0 -1263
- data/lib/stamina/automaton/complete.rb +0 -36
- data/lib/stamina/automaton/equivalence.rb +0 -55
- data/lib/stamina/automaton/metrics.rb +0 -78
- data/lib/stamina/automaton/minimize.rb +0 -25
- data/lib/stamina/automaton/minimize/hopcroft.rb +0 -116
- data/lib/stamina/automaton/minimize/pitchies.rb +0 -64
- data/lib/stamina/automaton/strip.rb +0 -16
- data/lib/stamina/automaton/walking.rb +0 -363
- data/lib/stamina/classifier.rb +0 -52
- data/lib/stamina/command.rb +0 -45
- data/lib/stamina/command/abbadingo_dfa.rb +0 -81
- data/lib/stamina/command/abbadingo_samples.rb +0 -40
- data/lib/stamina/command/adl2dot.rb +0 -71
- data/lib/stamina/command/classify.rb +0 -48
- data/lib/stamina/command/help.rb +0 -27
- data/lib/stamina/command/infer.rb +0 -141
- data/lib/stamina/command/metrics.rb +0 -51
- data/lib/stamina/command/robustness.rb +0 -22
- data/lib/stamina/command/score.rb +0 -35
- data/lib/stamina/errors.rb +0 -23
- data/lib/stamina/ext/math.rb +0 -20
- data/lib/stamina/induction/blue_fringe.rb +0 -265
- data/lib/stamina/induction/commons.rb +0 -156
- data/lib/stamina/induction/rpni.rb +0 -186
- data/lib/stamina/induction/union_find.rb +0 -377
- data/lib/stamina/input_string.rb +0 -123
- data/lib/stamina/loader.rb +0 -1
- data/lib/stamina/markable.rb +0 -42
- data/lib/stamina/sample.rb +0 -267
- data/lib/stamina/scoring.rb +0 -213
- data/lib/stamina/utils.rb +0 -1
- data/lib/stamina/utils/decorate.rb +0 -81
- data/lib/stamina/version.rb +0 -14
- data/stamina.gemspec +0 -191
- data/stamina.noespec +0 -32
- data/tasks/debug_mail.rake +0 -78
- data/tasks/debug_mail.txt +0 -13
- data/tasks/gem.rake +0 -68
- data/tasks/spec_test.rake +0 -79
- data/tasks/unit_test.rake +0 -77
- data/tasks/yard.rake +0 -51
- data/test/stamina/abbadingo/random_dfa_test.rb +0 -16
- data/test/stamina/abbadingo/random_sample_test.rb +0 -78
- data/test/stamina/adl_test.rb +0 -516
- data/test/stamina/automaton/classifier_test.rb +0 -259
- data/test/stamina/automaton/complete_test.rb +0 -58
- data/test/stamina/automaton/equivalence_test.rb +0 -120
- data/test/stamina/automaton/metrics_test.rb +0 -36
- data/test/stamina/automaton/minimize/hopcroft_test.rb +0 -15
- data/test/stamina/automaton/minimize/minimize_test.rb +0 -55
- data/test/stamina/automaton/minimize/pitchies_test.rb +0 -15
- data/test/stamina/automaton/minimize/rice_edu_10.adl +0 -16
- data/test/stamina/automaton/minimize/rice_edu_10.min.adl +0 -13
- data/test/stamina/automaton/minimize/rice_edu_13.adl +0 -13
- data/test/stamina/automaton/minimize/rice_edu_13.min.adl +0 -7
- data/test/stamina/automaton/minimize/should_strip_1.adl +0 -8
- data/test/stamina/automaton/minimize/should_strip_1.min.adl +0 -6
- data/test/stamina/automaton/minimize/unknown_1.adl +0 -16
- data/test/stamina/automaton/minimize/unknown_1.min.adl +0 -12
- data/test/stamina/automaton/strip_test.rb +0 -36
- data/test/stamina/automaton/to_dot_test.rb +0 -64
- data/test/stamina/automaton/walking/dfa_delta_test.rb +0 -39
- data/test/stamina/automaton/walking_test.rb +0 -206
- data/test/stamina/automaton_additional_test.rb +0 -190
- data/test/stamina/automaton_test.rb +0 -1104
- data/test/stamina/exit.rb +0 -3
- data/test/stamina/induction/blue_fringe_test.rb +0 -83
- data/test/stamina/induction/induction_test.rb +0 -70
- data/test/stamina/induction/redblue_mergesamestatebug_expected.adl +0 -19
- data/test/stamina/induction/redblue_mergesamestatebug_pta.dot +0 -64
- data/test/stamina/induction/redblue_mergesamestatebug_sample.adl +0 -9
- data/test/stamina/induction/redblue_universal_expected.adl +0 -4
- data/test/stamina/induction/redblue_universal_sample.adl +0 -5
- data/test/stamina/induction/rpni_inria_expected.adl +0 -7
- data/test/stamina/induction/rpni_inria_sample.adl +0 -9
- data/test/stamina/induction/rpni_test.rb +0 -129
- data/test/stamina/induction/rpni_test_pta.dot +0 -22
- data/test/stamina/induction/rpni_universal_expected.adl +0 -4
- data/test/stamina/induction/rpni_universal_sample.adl +0 -4
- data/test/stamina/induction/union_find_test.rb +0 -124
- data/test/stamina/input_string_test.rb +0 -323
- data/test/stamina/markable_test.rb +0 -70
- data/test/stamina/randdfa.adl +0 -66
- data/test/stamina/sample.adl +0 -4
- data/test/stamina/sample_classify_test.rb +0 -149
- data/test/stamina/sample_test.rb +0 -290
- data/test/stamina/scoring_test.rb +0 -63
- data/test/stamina/small_dfa.dot +0 -16
- data/test/stamina/small_dfa.gif +0 -0
- data/test/stamina/small_nfa.dot +0 -18
- data/test/stamina/small_nfa.gif +0 -0
- data/test/stamina/stamina_test.rb +0 -80
- data/test/stamina/utils/decorate_test.rb +0 -65
- data/test/test_all.rb +0 -7
data/lib/stamina/utils.rb
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require 'stamina/utils/decorate'
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module Stamina
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module Utils
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#
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# Decorates states of an automaton by applying a propagation rule
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# until a fix point is reached.
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#
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class Decorate
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# The key to use to maintain the decoration on states (:invariant
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# is used by default)
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attr_writer :decoration_key
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# Creates a decoration algorithm instance
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def initialize(decoration_key = :invariant)
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@decoration_key = decoration_key
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@suppremum = nil
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@propagate = nil
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end
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# Installs a suppremum function through a block.
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def set_suppremum(&block)
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raise ArgumentError, 'Suppremum expected through a block' if block.nil?
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raise ArgumentError, 'Block of arity 2 expected' unless block.arity==2
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@suppremum = block
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end
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# Installs a propagate function through a block.
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def set_propagate(&block)
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raise ArgumentError, 'Propagate expected through a block' if block.nil?
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raise ArgumentError, 'Block of arity 2 expected' unless block.arity==2
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@propagate = block
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end
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# Computes the suppremum between two decorations. By default, this method
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# looks for a suppremum function installed with set_suppremum. If not found,
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# it tries calling a suppremum method on d0. If not found it raises an error.
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# This method may be overriden.
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def suppremum(d0, d1)
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return @suppremum.call(d0, d1) if @suppremum
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return d0.suppremum(d1) if d0.respond_to?(:suppremum)
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raise "No suppremum function installed or implemented by decorations"
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end
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# Computes the propagation rule. By default, this method looks for a propagate
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# function installed with set_propagate. If not found, it tries calling a +
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# method on deco. If not found it raises an error.
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# This method may be overriden.
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def propagate(deco, edge)
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return @propagate.call(deco, edge) if @propagate
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return deco.+(edge) if deco.respond_to?(:+)
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raise "No propagate function installed or implemented by decorations"
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end
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# Executes the propagation algorithm on a given automaton.
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def execute(fa, bottom, d0)
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# install initial decoration
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fa.states.each do |s|
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s[@decoration_key] = (s.initial? ? d0 : bottom)
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end
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# fix-point loop starting with initial states
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to_explore = fa.initial_states
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until to_explore.empty?
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source = to_explore.pop
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source.out_edges.each do |edge|
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target = edge.target
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p_decor = propagate(source[@decoration_key], edge)
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p_decor = suppremum(target[@decoration_key], p_decor)
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unless p_decor == target[@decoration_key]
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target[@decoration_key] = p_decor
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to_explore << target unless to_explore.include?(target)
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end
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end
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end
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fa
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end
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end # class Decorate
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end # module Utils
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end # module Stamina
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data/lib/stamina/version.rb
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# We require your library, mainly to have access to the VERSION number.
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# Feel free to set $version manually.
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$LOAD_PATH.unshift File.expand_path('../lib', __FILE__)
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require "stamina/version"
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$version = Stamina::Version.to_s
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# This is your Gem specification. Default values are provided so that your library
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# should be correctly packaged given what you have described in the .noespec file.
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#
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Gem::Specification.new do |s|
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################################################################### ABOUT YOUR GEM
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# Gem name (required)
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s.name = "stamina"
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# Gem version (required)
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s.version = $version
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# A short summary of this gem
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#
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# This is displayed in `gem list -d`.
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s.summary = "Automaton and Regular Inference Toolkit"
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# A long description of this gem (required)
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#
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# The description should be more detailed than the summary. For example,
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# you might wish to copy the entire README into the description.
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s.description = "Stamina is an automaton and regular inference toolkit initially developped for the baseline \nof the Stamina Competition (stamina.chefbe.net)."
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# The URL of this gem home page (optional)
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s.homepage = "http://stamina.chefbe.net/"
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# Gem publication date (required but auto)
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# you know what you do!
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#
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# s.date = Time.now.strftime('%Y-%m-%d')
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# s.rubyforge_project = nil
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################################################################### ABOUT THE AUTHORS
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# The list of author names who wrote this gem.
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#
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# If you are providing multiple authors and multiple emails they should be
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# in the same order.
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#
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s.authors = ["Bernard Lambeau"]
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# Contact emails for this gem
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# If you are providing multiple authors and multiple emails they should be
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# in the same order.
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# NOTE: Somewhat strangly this attribute is always singular!
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# Don't replace by s.emails = ...
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s.email = ["blambeau@gmail.com"]
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################################################################### PATHS, FILES, BINARIES
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# Paths in the gem to add to $LOAD_PATH when this gem is
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# activated (required).
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################################################################### REQUIREMENTS & INSTALL
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# Remember the gem version requirements operators and schemes:
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s.add_development_dependency("yard", "~> 0.6.4")
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s.add_development_dependency("bluecloth", "~> 2.0.9")
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s.add_development_dependency("wlang", "~> 0.10.1")
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# The version of ruby required by this gem
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#
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################################################################### SECURITY
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# The key used to sign this gem. See Gem::Security for details.
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|
-
#
|
172
|
-
# s.signing_key = nil
|
173
|
-
|
174
|
-
# The certificate chain used to sign this gem. See Gem::Security for
|
175
|
-
# details.
|
176
|
-
#
|
177
|
-
# s.cert_chain = []
|
178
|
-
|
179
|
-
################################################################### RDOC
|
180
|
-
|
181
|
-
# An ARGV style array of options to RDoc
|
182
|
-
#
|
183
|
-
# See 'rdoc --help' about this
|
184
|
-
#
|
185
|
-
s.rdoc_options = []
|
186
|
-
|
187
|
-
# Extra files to add to RDoc such as README
|
188
|
-
#
|
189
|
-
s.extra_rdoc_files = Dir["README.md"] + Dir["CHANGELOG.md"] + Dir["LICENCE.md"]
|
190
|
-
|
191
|
-
end
|
data/stamina.noespec
DELETED
@@ -1,32 +0,0 @@
|
|
1
|
-
# Noe template for ruby gem libraries (https://github.com/blambeau/noe) - short version
|
2
|
-
# Run 'noe show-spec' and 'noe help show-spec' for additional details.
|
3
|
-
template-info:
|
4
|
-
name: "ruby"
|
5
|
-
version: 1.3.0
|
6
|
-
variables:
|
7
|
-
lower:
|
8
|
-
stamina
|
9
|
-
upper:
|
10
|
-
Stamina
|
11
|
-
version:
|
12
|
-
0.4.0
|
13
|
-
summary: |-
|
14
|
-
Automaton and Regular Inference Toolkit
|
15
|
-
description: |-
|
16
|
-
Stamina is an automaton and regular inference toolkit initially developped for the baseline
|
17
|
-
of the Stamina Competition (stamina.chefbe.net).
|
18
|
-
authors:
|
19
|
-
- name: Bernard Lambeau
|
20
|
-
email: blambeau@gmail.com
|
21
|
-
links:
|
22
|
-
- http://stamina.chefbe.net/
|
23
|
-
- http://github.com/blambeau/stamina
|
24
|
-
dependencies:
|
25
|
-
- {name: quickl, version: "~> 0.2.0", groups: [runtime]}
|
26
|
-
- {name: rake, version: "~> 0.8.7", groups: [development]}
|
27
|
-
- {name: bundler, version: "~> 1.0", groups: [development]}
|
28
|
-
- {name: rspec, version: "~> 2.4.0", groups: [development]}
|
29
|
-
- {name: yard, version: "~> 0.6.4", groups: [development]}
|
30
|
-
- {name: bluecloth, version: "~> 2.0.9", groups: [development]}
|
31
|
-
- {name: wlang, version: "~> 0.10.1", groups: [development]}
|
32
|
-
- {name: gnuplot, version: "~> 2.3.6", groups: [development]}
|
data/tasks/debug_mail.rake
DELETED
@@ -1,78 +0,0 @@
|
|
1
|
-
# Installs a rake task for debuging the announcement mail.
|
2
|
-
#
|
3
|
-
# This file installs the 'rake debug_mail' that flushes an announcement mail
|
4
|
-
# for your library on the standard output. It is automatically generated
|
5
|
-
# by Noe from your .noespec file, and should therefore be configured there,
|
6
|
-
# under the variables/rake_tasks/debug_mail entry, as illustrated below:
|
7
|
-
#
|
8
|
-
# variables:
|
9
|
-
# rake_tasks:
|
10
|
-
# debug_mail:
|
11
|
-
# rx_changelog_sections: /^#/
|
12
|
-
# nb_changelog_sections: 1
|
13
|
-
# ...
|
14
|
-
#
|
15
|
-
# If you have specific needs requiring manual intervention on this file,
|
16
|
-
# don't forget to set safe-override to false in your noe specification:
|
17
|
-
#
|
18
|
-
# template-info:
|
19
|
-
# manifest:
|
20
|
-
# tasks/debug_mail.rake:
|
21
|
-
# safe-override: false
|
22
|
-
#
|
23
|
-
# The mail template used can be found in debug_mail.txt. That file may be
|
24
|
-
# changed to tune the mail you want to send. If you do so, don't forget to
|
25
|
-
# add a manifest entry in your .noespec file to avoid overriding you
|
26
|
-
# changes. The mail template uses wlang, with parentheses for block
|
27
|
-
# delimiters.
|
28
|
-
#
|
29
|
-
# template-info:
|
30
|
-
# manifest:
|
31
|
-
# tasks/debug_mail.txt:
|
32
|
-
# safe-override: false
|
33
|
-
#
|
34
|
-
begin
|
35
|
-
require 'wlang'
|
36
|
-
require 'yaml'
|
37
|
-
|
38
|
-
desc "Debug the release announcement mail"
|
39
|
-
task :debug_mail do
|
40
|
-
# Check that a .noespec file exists
|
41
|
-
noespec_file = File.expand_path('../../stamina.noespec', __FILE__)
|
42
|
-
unless File.exists?(noespec_file)
|
43
|
-
raise "Unable to find .noespec project file, sorry."
|
44
|
-
end
|
45
|
-
|
46
|
-
# Load it as well as variables and options
|
47
|
-
noespec = YAML::load(File.read(noespec_file))
|
48
|
-
vars = noespec['variables'] || {}
|
49
|
-
|
50
|
-
# Changes are taken from CHANGELOG
|
51
|
-
logs = Dir[File.expand_path("../../CHANGELOG.*", __FILE__)]
|
52
|
-
unless logs.size == 1
|
53
|
-
abort "Unable to find a changelog file"
|
54
|
-
end
|
55
|
-
|
56
|
-
# Load interesting changesets
|
57
|
-
changes, end_found = [], 0
|
58
|
-
File.readlines(logs.first).select{|line|
|
59
|
-
if line =~ /^#/
|
60
|
-
break if end_found >= 1
|
61
|
-
end_found += 1
|
62
|
-
end
|
63
|
-
changes << line
|
64
|
-
}
|
65
|
-
vars['changes'] = changes.join
|
66
|
-
|
67
|
-
# WLang template
|
68
|
-
template = File.expand_path('../debug_mail.txt', __FILE__)
|
69
|
-
|
70
|
-
# Let's go!
|
71
|
-
$stdout << WLang::file_instantiate(template, vars, "wlang/active-text")
|
72
|
-
end
|
73
|
-
|
74
|
-
rescue LoadError
|
75
|
-
task :debug_mail do
|
76
|
-
abort "wlang is not available. Try 'gem install wlang'"
|
77
|
-
end
|
78
|
-
end
|
data/tasks/debug_mail.txt
DELETED
data/tasks/gem.rake
DELETED
@@ -1,68 +0,0 @@
|
|
1
|
-
# Installs rake tasks for gemming and packaging
|
2
|
-
#
|
3
|
-
# This file installs the 'rake package', 'rake gem' tasks and associates
|
4
|
-
# (clobber_package, repackage, ...). It is automatically generated by Noe
|
5
|
-
# from your .noespec file, and should therefore be configured there, under
|
6
|
-
# the variables/rake_tasks/gem entry, as illustrated below:
|
7
|
-
#
|
8
|
-
# variables:
|
9
|
-
# rake_tasks:
|
10
|
-
# gem:
|
11
|
-
# package_dir: pkg
|
12
|
-
# need_tar: false
|
13
|
-
# need_tar_gz: false
|
14
|
-
# need_tar_bz2: false
|
15
|
-
# need_zip: false
|
16
|
-
# ...
|
17
|
-
#
|
18
|
-
# If you have specific needs requiring manual intervention on this file,
|
19
|
-
# don't forget to set safe-override to false in your noe specification:
|
20
|
-
#
|
21
|
-
# template-info:
|
22
|
-
# manifest:
|
23
|
-
# tasks/gem.rake:
|
24
|
-
# safe-override: false
|
25
|
-
#
|
26
|
-
begin
|
27
|
-
require 'rubygems/package_task'
|
28
|
-
Gem::PackageTask.new($gemspec) do |t|
|
29
|
-
|
30
|
-
# Name of the package
|
31
|
-
t.name = $gemspec.name
|
32
|
-
|
33
|
-
# Version of the package
|
34
|
-
t.version = $gemspec.version
|
35
|
-
|
36
|
-
# Directory used to store the package files
|
37
|
-
t.package_dir = "pkg"
|
38
|
-
|
39
|
-
# True if a gzipped tar file (tgz) should be produced
|
40
|
-
t.need_tar = false
|
41
|
-
|
42
|
-
# True if a gzipped tar file (tar.gz) should be produced
|
43
|
-
t.need_tar_gz = false
|
44
|
-
|
45
|
-
# True if a bzip2'd tar file (tar.bz2) should be produced
|
46
|
-
t.need_tar_bz2 = false
|
47
|
-
|
48
|
-
# True if a zip file should be produced (default is false)
|
49
|
-
t.need_zip = false
|
50
|
-
|
51
|
-
# List of files to be included in the package.
|
52
|
-
t.package_files = $gemspec.files
|
53
|
-
|
54
|
-
# Tar command for gzipped or bzip2ed archives.
|
55
|
-
t.tar_command = "tar"
|
56
|
-
|
57
|
-
# Zip command for zipped archives.
|
58
|
-
t.zip_command = "zip"
|
59
|
-
|
60
|
-
end
|
61
|
-
rescue LoadError
|
62
|
-
task :gem do
|
63
|
-
abort 'rubygems/package_task is not available. You should verify your rubygems installation'
|
64
|
-
end
|
65
|
-
task :package do
|
66
|
-
abort 'rubygems/package_task is not available. You should verify your rubygems installation'
|
67
|
-
end
|
68
|
-
end
|