snakemake-plugin-jekyll 0.0.1
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- checksums.yaml +7 -0
- data/COPYRIGHT +15 -0
- data/LICENSE +21 -0
- data/NOTICE +21 -0
- data/README.md +93 -0
- data/_includes/_gh_link.html +8 -0
- data/_includes/_info_bar.html +5 -0
- data/_includes/_reading_time.html +12 -0
- data/_includes/accordion.html +131 -0
- data/_includes/editable.html +5 -0
- data/_includes/favicons.html +17 -0
- data/_includes/feedback.html +58 -0
- data/_includes/footer.html +8 -0
- data/_includes/head.html +11 -0
- data/_includes/landing.html +132 -0
- data/_includes/navigation.html +25 -0
- data/_includes/policy/legend.html +4 -0
- data/_includes/policy/rule.html +13 -0
- data/_includes/scrolltop.html +33 -0
- data/_includes/sidebar.html +22 -0
- data/_includes/site-footer.html +14 -0
- data/_includes/toc.html +35 -0
- data/_layouts/default.html +15 -0
- data/_layouts/docs.html +88 -0
- data/_layouts/page-two-col.html +22 -0
- data/_layouts/page.html +11 -0
- data/_layouts/redirect.html +13 -0
- data/assets/css/main.css +5399 -0
- data/assets/css/style.css +268 -0
- data/assets/css/vendors.min.css +3 -0
- data/assets/images/demo.png +0 -0
- data/assets/images/icons/icon-download-form.png +0 -0
- data/assets/images/icons/icon-download.png +0 -0
- data/assets/images/icons/open-iconic/sprite.min.svg +1 -0
- data/assets/images/phila-skyline.jpg +0 -0
- data/assets/images/stately-logo.png +0 -0
- data/assets/images/theme-sidebar.png +0 -0
- data/assets/images/theme.png +0 -0
- data/assets/img/brands.svg +1336 -0
- data/assets/img/favicon/android-icon-144x144.png +0 -0
- data/assets/img/favicon/android-icon-192x192.png +0 -0
- data/assets/img/favicon/android-icon-36x36.png +0 -0
- data/assets/img/favicon/android-icon-48x48.png +0 -0
- data/assets/img/favicon/android-icon-72x72.png +0 -0
- data/assets/img/favicon/android-icon-96x96.png +0 -0
- data/assets/img/favicon/apple-icon-114x114.png +0 -0
- data/assets/img/favicon/apple-icon-120x120.png +0 -0
- data/assets/img/favicon/apple-icon-144x144.png +0 -0
- data/assets/img/favicon/apple-icon-152x152.png +0 -0
- data/assets/img/favicon/apple-icon-180x180.png +0 -0
- data/assets/img/favicon/apple-icon-57x57.png +0 -0
- data/assets/img/favicon/apple-icon-60x60.png +0 -0
- data/assets/img/favicon/apple-icon-72x72.png +0 -0
- data/assets/img/favicon/apple-icon-76x76.png +0 -0
- data/assets/img/favicon/apple-icon-precomposed.png +0 -0
- data/assets/img/favicon/apple-icon.png +0 -0
- data/assets/img/favicon/browserconfig.xml +2 -0
- data/assets/img/favicon/favicon-16x16.png +0 -0
- data/assets/img/favicon/favicon-32x32.png +0 -0
- data/assets/img/favicon/favicon-96x96.png +0 -0
- data/assets/img/favicon/favicon.ico +0 -0
- data/assets/img/favicon/manifest.json +41 -0
- data/assets/img/favicon/ms-icon-144x144.png +0 -0
- data/assets/img/favicon/ms-icon-150x150.png +0 -0
- data/assets/img/favicon/ms-icon-310x310.png +0 -0
- data/assets/img/favicon/ms-icon-70x70.png +0 -0
- data/assets/img/snakemake-logo.png +0 -0
- data/assets/img/snakemake-square.png +0 -0
- data/assets/img/solid.svg +2996 -0
- data/assets/js/home.js +57 -0
- data/assets/js/jquery-3.3.1/jquery-3.3.1.js +10364 -0
- data/assets/js/jquery-3.3.1/jquery-3.3.1.min.js +2 -0
- data/assets/js/vendors.min.js +1 -0
- metadata +132 -0
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<div id="td-sidebar-menu" class="td-sidebar__inner">
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<!-- TODO we need search here -->
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<!--<form class="td-sidebar__search d-flex align-items-center">
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<input type="search" class="form-control td-search-input" placeholder="Search this site..." aria-label="Search this site..." autocomplete="off">
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<button class="btn btn-link td-sidebar__toggle d-md-none p-0 ml-3 fas fa-bars" type="button" data-toggle="collapse" data-target="#td-section-nav" aria-controls="td-docs-nav" aria-expanded="false" aria-label="Toggle section navigation">
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</button>
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</form>-->
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<nav class="collapse td-sidebar-nav pt-2" id="td-section-nav">
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<ul class="list-style-none">
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{% for section in site.data.menus.[page.sidebar] %}
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{% capture sectionUrl %}
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{{ section.url | replace: "/", "" }}
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{% endcapture %}
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{% capture pageUrl %}
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{{ page.url | replace: "/", "" }}
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{% endcapture %}
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<li class="side-nav-item border-bottom m-0{% if pageUrl == sectionUrl %} active{% endif %} js-side-nav-item"><a href="{{ site.baseurl }}/{{ section.url }}" class="side-nav-link py-2 d-block{% if pageUrl == sectionUrl %} active js-side-nav-link-active{% endif %}">{{ section.title }}</a></li>
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{% endfor %}
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</ul>
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</nav>
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</div>
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<footer class="bg-darkest py-6">
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<div class="container-lg px-4">
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<div class="col-lg-8 dim">
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{% unless site.footer_logo_file == nil %}<img src="{{ site.footer_logo_file | absolute_url }}" alt="{{ site.title }}" class="float-left mr-4 dim">{% endunless %}
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<p class="text-serif text-white text-small">
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{% if site.footer_text == nil or site.footer_text == false %}
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This site is using the Stately theme,<br>© Copyright 2016, under the terms of the <a href="https://github.com/pmarsceill/stately/blob/master/LICENSE.txt" class="text-white text-underline">MIT License</a>.
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{% else %}
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{{ site.footer_text }}
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{% endif %}
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</p>
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</div>
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</div>
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</footer>
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data/_includes/toc.html
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<script
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src="{{ site.baseurl }}/assets/js/jquery-3.3.1/jquery-3.3.1.min.js"
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integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8="
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crossorigin="anonymous"></script>
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<script>
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$(document).ready(function() {
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var toc = $('#TOC');
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// Select each header
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sections = $('.td-content h1');
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$.each(sections, function(idx, v) {
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section = $(v);
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var div_id = $(section).attr('id');
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var div_text = section.text().split('¶')[0];
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var parent = $("#" + div_id)
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var content = '<li id="link_' + div_id + '"><a href="#' + div_id + '" title="' + div_text +'">' + div_text +'</a></li>';
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$(toc).append(content);
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// Add section code to subnavigation
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var children = $('<ul></ul>')
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var contenders = $("#" + div_id).nextUntil("h1");
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$.each(contenders, function(idx, contender){
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if($(contender).is('h2') || $(contender).is('h3')) {
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var contender_id = $(contender).attr('id');
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var contender_text = $(contender).text().split('¶')[0];
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var content = '<li><a href="#' + contender_id + '" title="' + contender_text +'">' + contender_text +'</a></li>';
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children.append(content);
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}
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})
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$("#link_" + div_id).append(children);
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});
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});
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</script>
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<!DOCTYPE html>
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<html>
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{% include head.html %}
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<body class="bg-darkest">
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{% unless site.info_bar == nil or site.info_bar == false %}
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{% include _info_bar.html %}
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{% endunless %}
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{% include navigation.html %}
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<div class="{% if page.bg-color %}{{ page.bg-color }}{% else %}bg-white{% endif %}">{{ content }}</div>
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{% include site-footer.html %}
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</body>
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</html>
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data/_layouts/docs.html
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---
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layout: page
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---
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<style>
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.menu-list {
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line-height: 1.25;
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width: 300px;
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font-size: .85em;
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}
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.nav__sub-title {
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display: block;
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margin: 0.5rem 0;
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padding: 0.25rem 0;
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padding-top: 30px;
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font-family: -apple-system, BlinkMacSystemFont, "Roboto", "Segoe UI", "Helvetica Neue", "Lucida Grande", Arial, sans-serif;
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font-size: .75em;
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font-weight: bold;
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text-transform: uppercase;
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border-bottom: 1px solid #f2f3f3;
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}
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.menu-list a {
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border-radius: 2px;
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color: #4a4a4a;
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display: block;
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padding: .5em .75em;
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}
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.menu-list a:hover {
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background-color: #f5f5f5;
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color: #363636;
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}
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.menu-list a.is-active {
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background-color: #3273dc;
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color: #fff;
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}
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.menu-list li ul {
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border-left: 1px solid #dbdbdb;
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margin: .75em;
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padding-left: .75em;
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}
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nav li {
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list-style: none;
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}
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</style>
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<div class="gut-lg">
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<nav class="side-nav col-md-3 float-md-left js-side-nav">
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{% if page.sidebar %}{% include sidebar.html %}{% endif %}
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<div class="d-none d-xl-block col-xl-2 td-toc d-print-none">
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<li>
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<a><span class="nav__sub-title">Contents</span></a>
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<ul class="menu-list" id="TOC">
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<!-- Links will be appended here-->
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</ul>
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</li>
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</div>
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{% include editable.html %}
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</nav>
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<div class="col-md-9 float-md-left">
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<main class="col-md-12" role="main">
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<div class="td-content">
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{{ content }}
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{% if section.links %}<div class="section-index">
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<hr class="panel-line">{% for child in section.links %}
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<div class="entry">
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<h5>
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<a href="{% if child.url %}{{ site.baseurl }}{{ child.url }}{% else %}{{ child.external_url }}{% endif %}">{{ child.title }}</a>
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</h5>
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<p>{{ child.description }}</p>
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</div>{% endfor %}
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</div>{% endif %}
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{% include feedback.html %}
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</div>
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</main>
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{% include toc.html %}
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{% include _gh_link.html %}
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</div>
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</div>
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---
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layout: page
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---
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<div class="gut-lg">
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<nav class="side-nav col-md-3 float-md-left js-side-nav">
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<ul class="list-style-none">
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{% assign pages_list = site.pages | sort:"url" %}
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{% for node in pages_list %}
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{% if node.parent == page.parent %}
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<li class="side-nav-item border-bottom m-0{% if page.url == node.url %} active{% endif %} js-side-nav-item"><a href="{{ node.url | absolute_url }}" class="side-nav-link py-2 d-block{% if page.url == node.url %} active js-side-nav-link-active{% endif %}">{{ node.title }}</a></li>
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{% endif %}
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{% endfor %}
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</ul>
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</nav>
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<div class="col-md-9 float-md-left">
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{{ content }}
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{% include _gh_link.html %}
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</div>
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</div>
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data/_layouts/page.html
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---
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layout: default
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---
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<div class="page-section markdown-body {% if page.wide == 'false' %}container-lg-home{% else %}container-lg{% endif %} px-4">
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{{ content }}
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{% if page.layout == "page" %}
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{% include _gh_link.html %}
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{% endif %}
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</div>
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<!DOCTYPE html>
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<html>
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<head>
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<link rel="canonical" href="{{ page.redirect_to }}"/>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
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<meta http-equiv="refresh" content="0;url={{ page.redirect_to }}" />
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</head>
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<body>
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<h1>Redirecting...</h1>
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<a href="{{ page.redirect_to }}">Click here if you are not redirected.<a>
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<script>location='{{ page.redirect_to }}'</script>
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</body>
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</html>
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