snakemake-plugin-jekyll 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (74) hide show
  1. checksums.yaml +7 -0
  2. data/COPYRIGHT +15 -0
  3. data/LICENSE +21 -0
  4. data/NOTICE +21 -0
  5. data/README.md +93 -0
  6. data/_includes/_gh_link.html +8 -0
  7. data/_includes/_info_bar.html +5 -0
  8. data/_includes/_reading_time.html +12 -0
  9. data/_includes/accordion.html +131 -0
  10. data/_includes/editable.html +5 -0
  11. data/_includes/favicons.html +17 -0
  12. data/_includes/feedback.html +58 -0
  13. data/_includes/footer.html +8 -0
  14. data/_includes/head.html +11 -0
  15. data/_includes/landing.html +132 -0
  16. data/_includes/navigation.html +25 -0
  17. data/_includes/policy/legend.html +4 -0
  18. data/_includes/policy/rule.html +13 -0
  19. data/_includes/scrolltop.html +33 -0
  20. data/_includes/sidebar.html +22 -0
  21. data/_includes/site-footer.html +14 -0
  22. data/_includes/toc.html +35 -0
  23. data/_layouts/default.html +15 -0
  24. data/_layouts/docs.html +88 -0
  25. data/_layouts/page-two-col.html +22 -0
  26. data/_layouts/page.html +11 -0
  27. data/_layouts/redirect.html +13 -0
  28. data/assets/css/main.css +5399 -0
  29. data/assets/css/style.css +268 -0
  30. data/assets/css/vendors.min.css +3 -0
  31. data/assets/images/demo.png +0 -0
  32. data/assets/images/icons/icon-download-form.png +0 -0
  33. data/assets/images/icons/icon-download.png +0 -0
  34. data/assets/images/icons/open-iconic/sprite.min.svg +1 -0
  35. data/assets/images/phila-skyline.jpg +0 -0
  36. data/assets/images/stately-logo.png +0 -0
  37. data/assets/images/theme-sidebar.png +0 -0
  38. data/assets/images/theme.png +0 -0
  39. data/assets/img/brands.svg +1336 -0
  40. data/assets/img/favicon/android-icon-144x144.png +0 -0
  41. data/assets/img/favicon/android-icon-192x192.png +0 -0
  42. data/assets/img/favicon/android-icon-36x36.png +0 -0
  43. data/assets/img/favicon/android-icon-48x48.png +0 -0
  44. data/assets/img/favicon/android-icon-72x72.png +0 -0
  45. data/assets/img/favicon/android-icon-96x96.png +0 -0
  46. data/assets/img/favicon/apple-icon-114x114.png +0 -0
  47. data/assets/img/favicon/apple-icon-120x120.png +0 -0
  48. data/assets/img/favicon/apple-icon-144x144.png +0 -0
  49. data/assets/img/favicon/apple-icon-152x152.png +0 -0
  50. data/assets/img/favicon/apple-icon-180x180.png +0 -0
  51. data/assets/img/favicon/apple-icon-57x57.png +0 -0
  52. data/assets/img/favicon/apple-icon-60x60.png +0 -0
  53. data/assets/img/favicon/apple-icon-72x72.png +0 -0
  54. data/assets/img/favicon/apple-icon-76x76.png +0 -0
  55. data/assets/img/favicon/apple-icon-precomposed.png +0 -0
  56. data/assets/img/favicon/apple-icon.png +0 -0
  57. data/assets/img/favicon/browserconfig.xml +2 -0
  58. data/assets/img/favicon/favicon-16x16.png +0 -0
  59. data/assets/img/favicon/favicon-32x32.png +0 -0
  60. data/assets/img/favicon/favicon-96x96.png +0 -0
  61. data/assets/img/favicon/favicon.ico +0 -0
  62. data/assets/img/favicon/manifest.json +41 -0
  63. data/assets/img/favicon/ms-icon-144x144.png +0 -0
  64. data/assets/img/favicon/ms-icon-150x150.png +0 -0
  65. data/assets/img/favicon/ms-icon-310x310.png +0 -0
  66. data/assets/img/favicon/ms-icon-70x70.png +0 -0
  67. data/assets/img/snakemake-logo.png +0 -0
  68. data/assets/img/snakemake-square.png +0 -0
  69. data/assets/img/solid.svg +2996 -0
  70. data/assets/js/home.js +57 -0
  71. data/assets/js/jquery-3.3.1/jquery-3.3.1.js +10364 -0
  72. data/assets/js/jquery-3.3.1/jquery-3.3.1.min.js +2 -0
  73. data/assets/js/vendors.min.js +1 -0
  74. metadata +132 -0
checksums.yaml ADDED
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+ ---
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+ SHA256:
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+ metadata.gz: 90395d10d0256ef5bbbec27012b645833e6c738e2d94fcb3f35d8799db8a9e24
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+ data.tar.gz: 1ffb4aea56b7d12080b4eb394ac241098abe458fa47ba32f44e1209a23685150
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+ SHA512:
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+ metadata.gz: 211f9ed2e418f9a7238ccd843b4b7361a6ff6ef7e5a0724b1945ddeabd66a1668d9af913dc169378911182246c13689c8cdf364b75665e10a41617d2d7459b95
7
+ data.tar.gz: 1c7479b7d77492ce9539938106322613c8eac59c67dad0b13a92cca3d469457a240a9ff36bf50f9e470cf26c7c6b946af32fcb736dbf59f266c2b38e42ad75ee
data/COPYRIGHT ADDED
@@ -0,0 +1,15 @@
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+ Intellectual Property Notice
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+ ----------------------------
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+
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+ HPCIC DevTools is licensed under the MIT license (LICENSE).
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+
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+ Copyrights and patents in this project are retained by
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+ contributors. No copyright assignment is required to contribute to
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+ HPCIC DevTools.
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+
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+ SPDX usage
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+ ------------
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+
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+ Individual files contain SPDX tags instead of the full license text.
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+ This enables machine processing of license information based on the SPDX
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+ License Identifiers that are available here: https://spdx.org/licenses/
data/LICENSE ADDED
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+ MIT License
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+
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+ Copyright (c) 2022-2023 LLNS, LLC and other HPCIC DevTools Developers.
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
data/NOTICE ADDED
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+ This work was produced under the auspices of the U.S. Department of
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+ Energy by Lawrence Livermore National Laboratory under Contract
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+ DE-AC52-07NA27344.
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+
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+ This work was prepared as an account of work sponsored by an agency of
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+ the United States Government. Neither the United States Government nor
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+ Lawrence Livermore National Security, LLC, nor any of their employees
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+ makes any warranty, expressed or implied, or assumes any legal liability
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+ or responsibility for the accuracy, completeness, or usefulness of any
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+ information, apparatus, product, or process disclosed, or represents that
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+ its use would not infringe privately owned rights.
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+
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+ Reference herein to any specific commercial product, process, or service
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+ by trade name, trademark, manufacturer, or otherwise does not necessarily
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+ constitute or imply its endorsement, recommendation, or favoring by the
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+ United States Government or Lawrence Livermore National Security, LLC.
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+
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+ The views and opinions of authors expressed herein do not necessarily
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+ state or reflect those of the United States Government or Lawrence
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+ Livermore National Security, LLC, and shall not be used for advertising
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+ or product endorsement purposes.
data/README.md ADDED
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+ # Snakemake Plugin Jekyll Docs Template
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+
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+ ![assets/img/snakemake-logo.png](assets/img/snakemake-logo.png)
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+
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+ This is a Snakemake jekyll template intended for plugin authors to easily deploy
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+ documentation alongside their repositories. Snakemake currently supports the following
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+ plugin types:
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+
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+ - [Executor Plugins](https://github.com/snakemake/snakemake-interface-executor-plugins)
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+
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+ ## Usage
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+
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+ Using the theme is easy - just add it as a `remote_theme` to your config yaml.
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+ We will be providing an example site (to use as a template) soon!
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+
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+ ```bash
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+ # Theme for docs
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+ plugins:
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+ - jekyll-remote-theme
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+
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+ remote_theme: snakemake/snakemake-plugin-docs-jekyll
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+ ```
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+
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+ And add
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+
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+ ```
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+ gem "jekyll-remote-theme"
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+ ```
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+
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+ to your Gemfile.
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+
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+ ### Add a Page
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+
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+ And then you can add any pages with the following front end matter (header)
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+ to use the documentation template.
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+
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+ ```
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+ ---
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+ title: plugin
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+ layout: docs
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+ permalink: /cmake/
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+ ---
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+ ```
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+
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+ ### Add a Sidebar
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+
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+ To add a sidebar to your pages, create a file under `_data/menus/` that is named
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+ according to your sidebar, e.g., `_data/menus/mysidebar.yaml` for a sidebar named `mysidebar`.
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+ The file should be a flat list of names and urls:
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+
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+ ```yaml
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+ - title: My Page
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+ url: "mypage"
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+ - title: Root of Site
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+ url: ""
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+ ```
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+
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+ And then you can add this to the front end matter of pages where you want it to appear:
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+
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+ ```
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+ ---
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+ title: plugin
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+ layout: docs
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+ sidebar: mysidebar
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+ permalink: /pagename/
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+ ---
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+ ```
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+
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+ ## Development
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+
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+ If you want to use the gem, it is built during CI, and release is currently done from the command line:
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+
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+ ```bash
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+ $ /bin/bash script/release.sh
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+ ```
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+
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+ But this isn't required since we can use `jekyll-remote-theme` and use it directly from GitHub.
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+ If you do release, you should bump the version in [snakemake-plugin-docs-jekyll.gemspec](snakemake-plugin-docs-jekyll.gemspec)
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+ and be on the main branch.
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+
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+
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+ ## License
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+
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+ HPCIC DevTools is distributed under the terms of the MIT license.
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+ All new contributions must be made under this license.
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+
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+ See [LICENSE](https://github.com/converged-computing/cloud-select/blob/main/LICENSE),
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+ [COPYRIGHT](https://github.com/converged-computing/cloud-select/blob/main/COPYRIGHT), and
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+ [NOTICE](https://github.com/converged-computing/cloud-select/blob/main/NOTICE) for details.
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+
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+ SPDX-License-Identifier: (MIT)
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+
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+ LLNL-CODE- 842614
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+ {% unless site.github_link == nil or site.github_link == false %}
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+ <div class="border-top mb-0 pt-4 mt-5 text-gray">
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+ <h5>This page is open source</h5>
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+ <p class="text-small">
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+ <a target="_blank" href="{{ site.github.repository_url }}/edit/{{ site.github_pages_branch }}/{{ page.path }}">Help improve its content by opening a Pull Request on GitHub</a>.
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+ </p>
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+ </div>
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+ {% endunless %}
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+ <div class="py-2">
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+ <div class="{% if page.url == '/home/' %}container-lg-home{% else %}container-lg{% endif %} px-4">
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+ <p class="mb-0 text-white text-small">{{ site.info_bar_text }}</p>
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+ </div>
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+ </div>
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+ <span title="Estimated read time">
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+ {% if post.content != nil %}
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+ {% assign words = post.content | number_of_words %}
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+ {% else %}
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+ {% assign words = content | number_of_words %}
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+ {% endif %}
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+ {% if words < 360 %}
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+ 1 min
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+ {% else %}
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+ {{ words | divided_by:180 }} min
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+ {% endif %}
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+ </span>
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+ <style>
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+ .accordion {
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+ width: 100%;
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+ background: #fff;
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+ text-align: left;
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+ }
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+ .accordion:hover {
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+ background-color: #F7F7F7;
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+ }
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+ .accordion__trigger {
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+ -webkit-appearance: none;
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+ -moz-appearance: none;
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+ appearance: none;
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+ font-size: inherit;
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+ /* text-transform: uppercase; */
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+ letter-spacing: 2px;
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+ padding: 1rem 1.5rem;
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+ background: #333;
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+ color: white;
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+ cursor: pointer;
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+ transition: 0.3s ease;
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+ border: 0 none;
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+ border-bottom: 1px solid #555;
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+ width: 100%;
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+ text-align: left;
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+ margin: 0;
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+ position: relative;
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+ }
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+ .accordion__trigger::after {
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+ content: "";
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+ position: absolute;
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+ right: 20px;
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+ top: calc(50% - 5px);
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+ width: 0;
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+ height: 0;
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+ border-left: 10px solid transparent;
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+ border-right: 10px solid transparent;
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+ border-top: 10px solid #fff;
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+ transform: rotate(0deg);
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+ transform-origin: center;
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+ transition: transform 0.5s;
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+ }
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+ .accordion__trigger[aria-expanded="true"]::after {
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+ transform: rotate(180deg);
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+ }
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+ .accordion__copy {
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+ overflow: hidden;
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+ padding: 0 1.5rem 0 1.5rem;
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+ color: #666;
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+ line-height: 1.6;
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+ font-size: 1rem;
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+ font-weight: 500;
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+ max-height: 0;
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+ visibility: hidden;
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+ transition: visibility 0.5s, padding 0.5s, max-height 0.5s;
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+ }
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+ .accordion__copy--open {
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+ visibility: visible;
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+ }
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+ .accordion__copy__pic {
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+ width: 100px;
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+ height: auto;
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+ float: right;
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+ margin: 0 0 0 20px;
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+ }
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+ @media (min-width: 540px) {
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+ .container__head {
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+ font-size: 2rem;
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+ }
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+ .accordion__copy__pic {
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+ width: 180px;
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+ }
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+ }
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+
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+ </style>
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+
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+ <script>
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+ // Thank you https://codepen.io/sgestrella/pen/byjPgQ
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+ (function () {
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+ const headings = document.querySelectorAll(".accordion__heading");
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+ const triggers = [];
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+ const accordionContents = document.querySelectorAll(".accordion__copy");
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+ const copyOpenClass = "accordion__copy--open";
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+
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+ headings.forEach((h, i) => {
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+ let btn = h.querySelector("button");
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+ triggers.push(btn);
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+ let target = h.nextElementSibling;
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+ btn.onclick = () => {
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+ let expanded = btn.getAttribute("aria-expanded") === "true";
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+ if (expanded) {
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+ closeItem(target, btn);
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+ } else {
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+ openItem(target, btn);
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+ }
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+ };
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+ });
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+ function closeAllExpandedItems() {
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+ const expandedTriggers = triggers.filter(
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+ (t) => t.getAttribute("aria-expanded") === "true"
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+ );
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+ const expandedCopy = Array.from(accordionContents).filter((c) =>
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+ c.classList.value.includes(copyOpenClass)
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+ );
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+ expandedTriggers.forEach((trigger) => {
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+ trigger.setAttribute("aria-expanded", false);
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+ });
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+ expandedCopy.forEach((copy) => {
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+ copy.classList.remove(copyOpenClass);
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+ copy.style.maxHeight = 0;
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+ copy.style.padding = "0 1.5rem 0 1.5rem";
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+ });
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+ }
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+ function closeItem(target, btn) {
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+ closeAllExpandedItems();
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+ btn.setAttribute("aria-expanded", false);
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+ target.classList.remove(copyOpenClass);
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+ target.style.maxHeight = 0;
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+ target.style.padding = "0 1.5rem 0 1.5rem";
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+ }
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+ function openItem(target, btn) {
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+ closeAllExpandedItems();
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+ btn.setAttribute("aria-expanded", true);
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+ target.classList.add(copyOpenClass);
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+ target.style.maxHeight = target.scrollHeight + "px";
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+ target.style.padding = "1rem 1.5rem 2rem 1.5rem";
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+ }
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+ setTimeout(() => triggers[0].click(), 750);
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+ })();
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+
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+ </script>
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+ <div style="padding-top:30px">
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+ <a href="{{ site.repo }}/edit/{% if site.github_branch %}{{ site.github_branch }}{% else %}main{% endif %}/{{ page.path }}" target="_blank"><i class="fa fa-edit fa-fw"></i> Edit this page</a><br>
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+ <a href="{{ site.repo }}/issues/new?labels={% if page.editable %}{{ page.editable }}{% else %}question{% endif %}&title=Question:&body=Question on: {{ site.repo }}/tree/{% if site.github_branch %}{{ site.github_branch }}{% else %}main{% endif %}/{{ page.path }}" target="_blank"><i class="fab fa-github fa-fw"></i> Create documentation issue</a><br>
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+ <a href="{{ site.repo }}/issues/new" target="_blank"><i class="fas fa-tasks fa-fw"></i> Create project issue</a>
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+ </div>
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+ <link rel="apple-touch-icon" sizes="57x57" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-57x57.png">
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+ <link rel="apple-touch-icon" sizes="60x60" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-60x60.png">
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+ <link rel="apple-touch-icon" sizes="72x72" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-72x72.png">
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+ <link rel="apple-touch-icon" sizes="76x76" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-76x76.png">
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+ <link rel="apple-touch-icon" sizes="114x114" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-114x114.png">
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+ <link rel="apple-touch-icon" sizes="120x120" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-120x120.png">
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+ <link rel="apple-touch-icon" sizes="144x144" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-144x144.png">
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+ <link rel="apple-touch-icon" sizes="152x152" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-152x152.png">
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+ <link rel="apple-touch-icon" sizes="180x180" href="{{ site.baseurl }}/assets/img/favicon/apple-icon-180x180.png">
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+ <link rel="icon" type="image/png" sizes="192x192" href="{{ site.baseurl }}/assets/img/favicon/android-icon-192x192.png">
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+ <link rel="icon" type="image/png" sizes="32x32" href="{{ site.baseurl }}/assets/img/favicon/favicon-32x32.png">
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+ <link rel="icon" type="image/png" sizes="96x96" href="{{ site.baseurl }}/assets/img/favicon/favicon-96x96.png">
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+ <link rel="icon" type="image/png" sizes="16x16" href="{{ site.baseurl }}/assets/img/favicon/favicon-16x16.png">
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+ <link rel="manifest" href="{{ site.baseurl }}/assets/img/favicon/manifest.json">
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+ <meta name="msapplication-TileColor" content="#ffffff">
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+ <meta name="msapplication-TileImage" content="/ms-icon-144x144.png">
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+ <meta name="theme-color" content="#ffffff
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+ {% if site.feedback %}<style>
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+ .feedback--answer {
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+ display: inline-block;
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+ }
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+ .feedback--answer-no {
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+ margin-left: 1em;
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+ }
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+ .feedback--response {
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+ display: none;
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+ margin-top: 1em;
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+ }
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+ .feedback--response__visible {
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+ display: block;
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+ }
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+ </style>
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+ <h5 class="feedback--title">Feedback</h5>
17
+ <p class="feedback--question">Was this page helpful?</p>
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+ <button class="feedback--answer feedback--answer-yes">Yes</button>
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+ <button class="feedback--answer feedback--answer-no">No</button>
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+ <p class="feedback--response feedback--response-yes">
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+ Glad to hear it! Please <a href="{{ site.repo }}/issues/new">tell us how we can improve</a>.
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+ </p>
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+ <p class="feedback--response feedback--response-no">
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+ Sorry to hear that. Please <a href="{{ site.repo }}/issues/new">tell us how we can improve</a>.
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+ </p>
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+ <script>
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+ const yesButton = document.querySelector('.feedback--answer-yes');
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+ const noButton = document.querySelector('.feedback--answer-no');
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+ const yesResponse = document.querySelector('.feedback--response-yes');
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+ const noResponse = document.querySelector('.feedback--response-no');
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+ const disableButtons = () => {
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+ yesButton.disabled = true;
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+ noButton.disabled = true;
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+ };
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+ const sendFeedback = (value) => {
36
+ if (typeof ga !== 'function') return;
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+ const args = {
38
+ command: 'send',
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+ hitType: 'event',
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+ category: 'Helpful',
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+ action: 'click',
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+ label: window.location.pathname,
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+ value: value
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+ };
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+ ga(args.command, args.hitType, args.category, args.action, args.label, args.value);
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+ };
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+ yesButton.addEventListener('click', () => {
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+ yesResponse.classList.add('feedback--response__visible');
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+ disableButtons();
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+ sendFeedback(1);
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+ });
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+ noButton.addEventListener('click', () => {
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+ noResponse.classList.add('feedback--response__visible');
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+ disableButtons();
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+ sendFeedback(0);
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+ });
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+ </script>{% endif %}<br/>
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+
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+ <footer class="footer">
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+ <p>{{ site.description }}</p>
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+ <p>
4
+ &copy; {{ 'now' | date: "%Y" }} <a class="highlight-link" href="https://github.com/snakemake/" target="_blank" rel="noreferrer">
5
+ Snakemake Authors and Contributors
6
+ </a>
7
+ </p>
8
+ </footer>
@@ -0,0 +1,11 @@
1
+ <head>
2
+ <meta charset="UTF-8">
3
+ <meta http-equiv="X-UA-Compatible" content="IE=Edge">
4
+ <meta name="viewport" content="width=device-width">
5
+ <title>{% if page.title %}{{ page.title }} - {% endif %}{{ site.title }}</title>
6
+ <link href="https://fonts.googleapis.com/css?family=Lato:300,400|Lora" rel="stylesheet">
7
+ <link rel="stylesheet" href="{{ site.baseurl }}/assets/css/main.css">
8
+ <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/all.min.css">
9
+ <!--<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap@5.1.1/dist/css/bootstrap.min.css"> -->
10
+ <script src="{{ site.baseurl }}/assets/js/home.js" ></script>
11
+ </head>
@@ -0,0 +1,132 @@
1
+ <!--Thank you https://longpdo.github.io/-->
2
+ <div id="landing">
3
+ <img src="assets/img/brands.svg"/>
4
+ <div class="landing-title">
5
+ <h1>
6
+ <span class="highlight-title"><a href="{{ site.baseurl }}/home/"><img src="{{ site.baseurl }}/assets/img/snakemake-logo.png"/></a></span>
7
+ </h1>
8
+ <h1>
9
+ <span id="typing"></span>
10
+ </h1>
11
+ <div class="landing-icons">
12
+
13
+ <a class="social-link" aria-label="Home" href="{{ site.baseurl }}/home/">
14
+ <svg viewBox="0 0 200 200" class="circle">
15
+ <circle cx="100" cy="100" r="80" />
16
+ </svg>
17
+ <div class="social">
18
+ <svg class="social-svg" viewBox="0 0 48 48">
19
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/solid.svg#home"| prepend: site.baseurl }}"></use>
20
+ </svg>
21
+ </div>
22
+ <span class="label">Home</span>
23
+ </a>
24
+
25
+ <a class="social-link" aria-label="Builds" href="https://snakemake.github.io/snakemake-workflow-catalog/">
26
+ <svg viewBox="0 0 200 200" class="circle">
27
+ <circle cx="100" cy="100" r="80" />
28
+ </svg>
29
+ <div class="social">
30
+ <svg class="social-svg" viewBox="0 0 48 48">
31
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/solid.svg#square"| prepend: site.baseurl }}"></use>
32
+ </svg>
33
+ </div>
34
+ <span class="label">Workflows</span>
35
+ </a>
36
+
37
+ {% if site.email != null %}
38
+ <a class="social-link email" aria-label="My E-Mail" href="mailto:{{site.email}}">
39
+ <svg viewBox="0 0 200 200" class="circle">
40
+ <circle cx="100" cy="100" r="80" />
41
+ </svg>
42
+ <div class="social">
43
+ <svg class="social-svg" viewBox="0 0 48 48">
44
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/solid.svg#envelope" | prepend: site.baseurl }}""></use>
45
+ </svg>
46
+ </div>
47
+ <span class="label">E-Mail</span>
48
+ </a>
49
+ {% endif %}
50
+
51
+ {% if site.github_username != null %}
52
+ <a class="social-link" aria-label="My GitHub" target="_blank" rel="noreferrer"
53
+ href="https://github.com/{{site.github_username}}"
54
+ >
55
+ <svg viewBox="0 0 200 200" class="circle">
56
+ <circle cx="100" cy="100" r="80" />
57
+ </svg>
58
+ <div class="social">
59
+ <svg class="social-svg" viewBox="0 0 48 48">
60
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/brands.svg#github" | prepend: site.baseurl }}"></use>
61
+ </svg>
62
+ </div>
63
+ <span class="label">GitHub</span>
64
+ </a>
65
+ {% endif %}
66
+
67
+ {% if site.codepen_username != null %}
68
+ <a class="social-link" aria-label="My Codepen" target="_blank" rel="noreferrer"
69
+ href="https://codepen.io/{{site.codepen_username}}"
70
+ >
71
+ <svg viewBox="0 0 200 200" class="circle">
72
+ <circle cx="100" cy="100" r="80" />
73
+ </svg>
74
+ <div class="social">
75
+ <svg class="social-svg" viewBox="0 0 48 48">
76
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/brands.svg#codepen" | prepend: site.baseurl }}"></use>
77
+ </svg>
78
+ </div>
79
+ <span class="label">CodePen</span>
80
+ </a>
81
+ {% endif %}
82
+
83
+ {% if site.dev_username != null %}
84
+ <a class="social-link" aria-label="My DEV" target="_blank" rel="noreferrer"
85
+ href="https://dev.to/{{site.dev_username}}"
86
+ >
87
+ <svg viewBox="0 0 200 200" class="circle">
88
+ <circle cx="100" cy="100" r="80" />
89
+ </svg>
90
+ <div class="social">
91
+ <svg class="social-svg" viewBox="0 0 48 48">
92
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/brands.svg#dev" | prepend: site.baseurl }}"></use>
93
+ </svg>
94
+ </div>
95
+ <span class="label">DEV</span>
96
+ </a>
97
+ {% endif %}
98
+
99
+ {% if site.linkedin_username != null %}
100
+ <a class="social-link linkedin" aria-label="My LinkedIn" target="_blank"
101
+ rel="noreferrer" href="https://www.linkedin.com/{{site.linkedin_username}}"
102
+ >
103
+ <svg viewBox="0 0 200 200" class="circle">
104
+ <circle cx="100" cy="100" r="80" />
105
+ </svg>
106
+ <div class="social">
107
+ <svg class="social-svg" viewBox="0 0 48 48">
108
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/brands.svg#linkedin-in" | prepend: site.baseurl }}"></use>
109
+ </svg>
110
+ </div>
111
+ <span class="label">LinkedIn</span>
112
+ </a>
113
+ {% endif %}
114
+
115
+ {% if site.twitter_username != null %}
116
+ <a class="social-link twitter" aria-label="My Twitter" target="_blank"
117
+ rel="noreferrer" href="https://twitter.com/{{site.twitter_username}}"
118
+ >
119
+ <svg viewBox="0 0 200 200" class="circle">
120
+ <circle cx="100" cy="100" r="80" />
121
+ </svg>
122
+ <div class="social">
123
+ <svg class="social-svg" viewBox="0 0 48 48">
124
+ <use x="12" y="12" width="24" height="24" viewBox="0 0 48 48" xlink:href="{{ "/assets/img/brands.svg#twitter" | prepend: site.baseurl }}"></use>
125
+ </svg>
126
+ </div>
127
+ <span class="label">Twitter</span>
128
+ </a>
129
+ {% endif %}
130
+ </div>
131
+ </div>
132
+ </div>
@@ -0,0 +1,25 @@
1
+ <nav class="site-nav py-4 bg-white">
2
+ <div class="{% if page.url == '/home/' %}container-lg-home{% else %}container-lg{% endif %} px-4">
3
+ <div class="d-flex flex-justify-between flex-items-center">
4
+ <div>
5
+ <a class="heading-beta no-underline" href="/home/">{% unless site.nav_logo_file == nil %}<img src="{{ site.nav_logo_file | absolute_url }}" alt="" class="site-logo mr-2">{% endunless %}</a>
6
+ </div>
7
+ <button type="button" name="Open nav" class="site-nav-trigger js-site-nav-trigger">
8
+ nav
9
+ </button>
10
+
11
+ <ol class="site-nav-items list-style-none js-site-nav-list">
12
+ <li class="site-nav-item mb-0 mr-3 js-site-nav-item">
13
+ <a class="site-nav-link" href="https://snakemake.readthedocs.io/en/stable/project_info/faq.html">
14
+ About
15
+ </a>
16
+ </li>
17
+ <li class="site-nav-item mb-0 mr-3 js-site-nav-item">
18
+ <a class="site-nav-link" href="https://snakemake.readthedocs.io/en/stable/getting_started/installation.html">
19
+ Docs
20
+ </a>
21
+ </li>
22
+ </ol>
23
+ </div>
24
+ </div>
25
+ </nav>
@@ -0,0 +1,4 @@
1
+ <h4 id="legend">Legend</h4>
2
+ <p><a href=""><img src="https://img.shields.io/badge/M.section-N-red.svg" alt="generic badge" /></a> Designates a <strong>mandatory</strong> point (policy).</p>
3
+
4
+ <p><a href=""><img src="https://img.shields.io/badge/R.section-N-yellow.svg" alt="generic badge" /></a> Designates a <strong>recommended</strong> point (guideline).</p>
@@ -0,0 +1,13 @@
1
+ <section class="accordion__item">
2
+ <h4 class="accordion__heading"><button class="accordion__trigger">
3
+ <p> <a name="{{ rule.id }}"></a><a href="#{{ rule.id }}"><img style="float:left" src="{{ rule.badge }}" alt="{% if rule.alt %}{{ rule.alt }}{% else %}Generic badge{% endif %}"/></a>&nbsp;&nbsp; {{ rule.description }}</p>
4
+ </button></h4>
5
+ <div class="accordion__copy">
6
+ <ul style="padding-bottom:20px">
7
+ {% if rule.details %}<li><strong>Details</strong>: {{ rule.details }}</li>{% endif %}
8
+ {% if rule.rationale %}<li><strong>Rationale</strong>: {{ rule.rationale }}</li>{% endif %}
9
+ {% if rule.references %}<li><strong>Reference</strong>: {% for reference in rule.references %}<a href="{{ reference.url }}" target="_blank"><em>{{ reference.id }}</em></a>{% endfor %}</li>{% endif %}
10
+ {% if rule.examples %}<li><strong>Examples</strong>:<ul>{% for example in rule.examples %}<li>{{ example }}</li>{% endfor %}</ul></li>{% endif %}
11
+ </ul>
12
+ </div>
13
+ </section>
@@ -0,0 +1,33 @@
1
+
2
+ <style>
3
+ #uppy {
4
+ position: fixed;
5
+ bottom: 20px;
6
+ right: 30px;
7
+ z-index: 99;
8
+ border: none;
9
+ outline: none;
10
+ background-color: darkred;
11
+ color: white;
12
+ cursor: pointer;
13
+ margin:15px;
14
+ border-radius: 10px;
15
+ }
16
+
17
+ #returnTop:hover {
18
+ background-color: #555;
19
+ }
20
+ </style>
21
+
22
+ <button id="uppy" title="Return to Top" class="btn btn-lg"> <i class="fa fa-chevron-up"></i></button>
23
+
24
+ <script>
25
+ (function() {
26
+
27
+ var scrollTop = function() {
28
+ window.scrollTo(0, 0);
29
+ };
30
+ document.getElementById('uppy').onclick = scrollTop;
31
+ })();
32
+ </script>
33
+