simple_bioc 0.0.5 → 0.0.6

Sign up to get free protection for your applications and to get access to all the features.
Files changed (46) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +13 -0
  3. data/html/BioCMerger.html +748 -0
  4. data/html/BioCReader.html +138 -146
  5. data/html/BioCWriter.html +84 -131
  6. data/html/README_md.html +79 -100
  7. data/html/SimpleBioC/Annotation.html +70 -113
  8. data/html/SimpleBioC/Collection.html +70 -113
  9. data/html/SimpleBioC/Document.html +76 -119
  10. data/html/SimpleBioC/Location.html +70 -113
  11. data/html/SimpleBioC/Node.html +72 -115
  12. data/html/SimpleBioC/NodeBase.html +63 -108
  13. data/html/SimpleBioC/Passage.html +74 -117
  14. data/html/SimpleBioC/Relation.html +85 -115
  15. data/html/SimpleBioC/Sentence.html +74 -117
  16. data/html/SimpleBioC.html +221 -129
  17. data/html/created.rid +16 -15
  18. data/html/css/fonts.css +167 -0
  19. data/html/css/rdoc.css +590 -0
  20. data/html/fonts/Lato-Light.ttf +0 -0
  21. data/html/fonts/Lato-LightItalic.ttf +0 -0
  22. data/html/fonts/Lato-Regular.ttf +0 -0
  23. data/html/fonts/Lato-RegularItalic.ttf +0 -0
  24. data/html/fonts/SourceCodePro-Bold.ttf +0 -0
  25. data/html/fonts/SourceCodePro-Regular.ttf +0 -0
  26. data/html/index.html +71 -53
  27. data/html/js/darkfish.js +32 -26
  28. data/html/js/jquery.js +4 -18
  29. data/html/js/navigation.js.gz +0 -0
  30. data/html/js/search.js +20 -5
  31. data/html/js/search_index.js +1 -1
  32. data/html/js/search_index.js.gz +0 -0
  33. data/html/js/searcher.js.gz +0 -0
  34. data/html/table_of_contents.html +379 -136
  35. data/lib/simple_bioc/bioc_merger.rb +209 -0
  36. data/lib/simple_bioc/relation.rb +1 -1
  37. data/lib/simple_bioc/version.rb +1 -1
  38. data/lib/simple_bioc.rb +8 -4
  39. data/spec/file_check_spec.rb +14 -1
  40. data/xml/PMC2133144.xml +3 -0
  41. data/xml/merge/9864355.xml +1 -0
  42. data/xml/merge/9864355_1.xml +1 -0
  43. data/xml/merge/9864355_2.xml +1974 -0
  44. data/xml/merge/9864355_3.xml +1 -0
  45. data/xml/merge/output.xml +6742 -0
  46. metadata +21 -2
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA1:
3
- metadata.gz: 7f41d51c5fdefb00b99d4fc0dfcd79e3f2f7738b
4
- data.tar.gz: 6ca95848028aa0b04b2b44fb3563111218cd5c26
3
+ metadata.gz: 7ed9fab44494192914d7688d3c5a470d3eeba17c
4
+ data.tar.gz: 5143198cbfbb6c484298a52c9bfc2a80575046c8
5
5
  SHA512:
6
- metadata.gz: fb18148c22f361d66ca12413e1f0c34cbfcc1d03cc65ede1e6f08a44978e0406455ddbadf727b8802b4bde9d6360f1dce2a42d45e7cedae44db5818ea847b939
7
- data.tar.gz: cb892612b41da3f73e9edc58836f290ff04a348e86869a487e92af577274e058f51b6b1eedcddab194926e7fcf3bc3f10634a01510baa33a7d3da62b83e926af
6
+ metadata.gz: 9767bc966d034b03af040c217e768e678fff7af58043699dba6b49de9ff086bb73f4146c1cf88b25b65e32ded4af7719cd90e0c999e45109511416ffa328c116
7
+ data.tar.gz: 30efd08ecc35fbd78a781caa39c381a8d57e25fb4530a7547f5768548d5929beae55c782f6f7dda9c469a4423cc55fbdfc93d06fdc67ac495c71415d74bc2a06
data/.gitignore CHANGED
@@ -16,3 +16,16 @@ tmp
16
16
  .yardoc
17
17
  _yardoc
18
18
  doc/
19
+
20
+ # OS X
21
+ .DS_Store*
22
+ Icon?
23
+ ._*
24
+
25
+ # Windows
26
+ Thumbs.db
27
+ ehthumbs.db
28
+ Desktop.ini
29
+
30
+ # Linux
31
+ .directory