simple_bioc 0.0.5 → 0.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.gitignore +13 -0
- data/html/BioCMerger.html +748 -0
- data/html/BioCReader.html +138 -146
- data/html/BioCWriter.html +84 -131
- data/html/README_md.html +79 -100
- data/html/SimpleBioC/Annotation.html +70 -113
- data/html/SimpleBioC/Collection.html +70 -113
- data/html/SimpleBioC/Document.html +76 -119
- data/html/SimpleBioC/Location.html +70 -113
- data/html/SimpleBioC/Node.html +72 -115
- data/html/SimpleBioC/NodeBase.html +63 -108
- data/html/SimpleBioC/Passage.html +74 -117
- data/html/SimpleBioC/Relation.html +85 -115
- data/html/SimpleBioC/Sentence.html +74 -117
- data/html/SimpleBioC.html +221 -129
- data/html/created.rid +16 -15
- data/html/css/fonts.css +167 -0
- data/html/css/rdoc.css +590 -0
- data/html/fonts/Lato-Light.ttf +0 -0
- data/html/fonts/Lato-LightItalic.ttf +0 -0
- data/html/fonts/Lato-Regular.ttf +0 -0
- data/html/fonts/Lato-RegularItalic.ttf +0 -0
- data/html/fonts/SourceCodePro-Bold.ttf +0 -0
- data/html/fonts/SourceCodePro-Regular.ttf +0 -0
- data/html/index.html +71 -53
- data/html/js/darkfish.js +32 -26
- data/html/js/jquery.js +4 -18
- data/html/js/navigation.js.gz +0 -0
- data/html/js/search.js +20 -5
- data/html/js/search_index.js +1 -1
- data/html/js/search_index.js.gz +0 -0
- data/html/js/searcher.js.gz +0 -0
- data/html/table_of_contents.html +379 -136
- data/lib/simple_bioc/bioc_merger.rb +209 -0
- data/lib/simple_bioc/relation.rb +1 -1
- data/lib/simple_bioc/version.rb +1 -1
- data/lib/simple_bioc.rb +8 -4
- data/spec/file_check_spec.rb +14 -1
- data/xml/PMC2133144.xml +3 -0
- data/xml/merge/9864355.xml +1 -0
- data/xml/merge/9864355_1.xml +1 -0
- data/xml/merge/9864355_2.xml +1974 -0
- data/xml/merge/9864355_3.xml +1 -0
- data/xml/merge/output.xml +6742 -0
- metadata +21 -2
data/html/SimpleBioC.html
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<h3 class="section-header">Defined In</h3>
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module SimpleBioC
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<p><a href="SimpleBioC.html">SimpleBioC</a> main library</p>
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<p>parse a BioC XML file in the given path and convert it into a collection
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<span class="ruby-identifier">collection</span> = <span class="ruby-constant">SimpleBioC</span>.<span class="ruby-identifier">from_xml</span>(<span class="ruby-identifier">content</span>, {<span class="ruby-identifier">documents</span>:[<span class="ruby-value">21785578</span>, <span class="ruby-value">21488974</span>]})
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<span class="ruby-identifier">options</span>[<span class="ruby-value">:documents</span>] = <span class="ruby-identifier">options</span>[<span class="ruby-value">:documents</span>].<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">e</span><span class="ruby-operator">|</span> <span class="ruby-identifier">e</span>.<span class="ruby-identifier">to_s</span>} <span class="ruby-keyword">if</span> <span class="ruby-identifier">options</span>[<span class="ruby-value">:documents</span>].<span class="ruby-identifier">kind_of?</span>(<span class="ruby-constant">Array</span>)
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<span class="ruby-keyword">return</span> <span class="ruby-constant">BioCMerger</span>.<span class="ruby-identifier">merge</span>(<span class="ruby-identifier">dest_bioc</span>, <span class="ruby-identifier">src_bioc</span>)
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|
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<span class="ruby-identifier">output</span> = <span class="ruby-constant">SimpleBioC</span>.<span class="ruby-identifier">to_xml</span>(<span class="ruby-identifier">collection</span>, {<span class="ruby-identifier">save_with</span><span class="ruby-operator">:</span> <span class="ruby-value">0</span>})
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lib/simple_bioc/bioc_merger.rb Mon, 07 Dec 2015 15:53:30 +0900
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lib/simple_bioc/bioc_reader.rb Sun, 06 Dec 2015 21:47:53 +0900
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lib/simple_bioc/bioc_writer.rb Tue, 23 Jun 2015 05:02:37 +0900
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lib/simple_bioc/collection.rb Sun, 06 Dec 2015 22:01:55 +0900
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lib/simple_bioc/document.rb Mon, 07 Dec 2015 07:32:29 +0900
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lib/simple_bioc/location.rb Thu, 11 Jun 2015 16:42:00 +0900
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lib/simple_bioc/relation.rb Mon, 07 Dec 2015 13:54:45 +0900
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lib/simple_bioc/sentence.rb Thu, 11 Jun 2015 16:42:00 +0900
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lib/simple_bioc/version.rb Tue, 23 Jun 2015 03:50:17 +0900
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