simple_bioc 0.0.5 → 0.0.6

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Files changed (46) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +13 -0
  3. data/html/BioCMerger.html +748 -0
  4. data/html/BioCReader.html +138 -146
  5. data/html/BioCWriter.html +84 -131
  6. data/html/README_md.html +79 -100
  7. data/html/SimpleBioC/Annotation.html +70 -113
  8. data/html/SimpleBioC/Collection.html +70 -113
  9. data/html/SimpleBioC/Document.html +76 -119
  10. data/html/SimpleBioC/Location.html +70 -113
  11. data/html/SimpleBioC/Node.html +72 -115
  12. data/html/SimpleBioC/NodeBase.html +63 -108
  13. data/html/SimpleBioC/Passage.html +74 -117
  14. data/html/SimpleBioC/Relation.html +85 -115
  15. data/html/SimpleBioC/Sentence.html +74 -117
  16. data/html/SimpleBioC.html +221 -129
  17. data/html/created.rid +16 -15
  18. data/html/css/fonts.css +167 -0
  19. data/html/css/rdoc.css +590 -0
  20. data/html/fonts/Lato-Light.ttf +0 -0
  21. data/html/fonts/Lato-LightItalic.ttf +0 -0
  22. data/html/fonts/Lato-Regular.ttf +0 -0
  23. data/html/fonts/Lato-RegularItalic.ttf +0 -0
  24. data/html/fonts/SourceCodePro-Bold.ttf +0 -0
  25. data/html/fonts/SourceCodePro-Regular.ttf +0 -0
  26. data/html/index.html +71 -53
  27. data/html/js/darkfish.js +32 -26
  28. data/html/js/jquery.js +4 -18
  29. data/html/js/navigation.js.gz +0 -0
  30. data/html/js/search.js +20 -5
  31. data/html/js/search_index.js +1 -1
  32. data/html/js/search_index.js.gz +0 -0
  33. data/html/js/searcher.js.gz +0 -0
  34. data/html/table_of_contents.html +379 -136
  35. data/lib/simple_bioc/bioc_merger.rb +209 -0
  36. data/lib/simple_bioc/relation.rb +1 -1
  37. data/lib/simple_bioc/version.rb +1 -1
  38. data/lib/simple_bioc.rb +8 -4
  39. data/spec/file_check_spec.rb +14 -1
  40. data/xml/PMC2133144.xml +3 -0
  41. data/xml/merge/9864355.xml +1 -0
  42. data/xml/merge/9864355_1.xml +1 -0
  43. data/xml/merge/9864355_2.xml +1974 -0
  44. data/xml/merge/9864355_3.xml +1 -0
  45. data/xml/merge/output.xml +6742 -0
  46. metadata +21 -2
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: simple_bioc
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  version: !ruby/object:Gem::Version
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- version: 0.0.5
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+ version: 0.0.6
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  platform: ruby
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  authors:
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  - Dongseop Kwon
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2015-06-22 00:00:00.000000000 Z
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+ date: 2015-12-07 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: nokogiri
@@ -123,6 +123,7 @@ files:
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  - LICENSE.txt
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  - README.md
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  - Rakefile
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+ - html/BioCMerger.html
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  - html/BioCReader.html
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  - html/BioCWriter.html
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  - html/README_md.html
@@ -137,6 +138,14 @@ files:
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  - html/SimpleBioC/Relation.html
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  - html/SimpleBioC/Sentence.html
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  - html/created.rid
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+ - html/css/fonts.css
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+ - html/css/rdoc.css
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+ - html/fonts/Lato-Light.ttf
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+ - html/fonts/Lato-LightItalic.ttf
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+ - html/fonts/Lato-Regular.ttf
146
+ - html/fonts/Lato-RegularItalic.ttf
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+ - html/fonts/SourceCodePro-Bold.ttf
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+ - html/fonts/SourceCodePro-Regular.ttf
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  - html/images/add.png
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  - html/images/arrow_up.png
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  - html/images/brick.png
@@ -166,13 +175,17 @@ files:
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  - html/js/darkfish.js
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  - html/js/jquery.js
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  - html/js/navigation.js
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+ - html/js/navigation.js.gz
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  - html/js/search.js
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  - html/js/search_index.js
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+ - html/js/search_index.js.gz
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  - html/js/searcher.js
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+ - html/js/searcher.js.gz
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  - html/rdoc.css
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  - html/table_of_contents.html
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  - lib/simple_bioc.rb
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  - lib/simple_bioc/annotation.rb
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+ - lib/simple_bioc/bioc_merger.rb
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  - lib/simple_bioc/bioc_reader.rb
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  - lib/simple_bioc/bioc_writer.rb
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  - lib/simple_bioc/collection.rb
@@ -190,6 +203,7 @@ files:
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  - spec/file_check_spec.rb
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  - spec/simple_bioc_spec.rb
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  - xml/BioC.dtd
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+ - xml/PMC2133144.xml
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  - xml/PMID-8557975-simplified-sentences-tokens.xml
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  - xml/PMID-8557975-simplified-sentences.xml
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  - xml/abbr.key
@@ -201,6 +215,11 @@ files:
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  - xml/everything.xml
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  - xml/lemma.key
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  - xml/lemma.xml
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+ - xml/merge/9864355.xml
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+ - xml/merge/9864355_1.xml
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+ - xml/merge/9864355_2.xml
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+ - xml/merge/9864355_3.xml
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+ - xml/merge/output.xml
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  - xml/pos.key
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  - xml/pos.xml
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  - xml/sentence.key