simple_bioc 0.0.10 → 0.0.11

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 38665d005a277e7bd83304fe0773618a2f242d54
-  data.tar.gz: 7101cfef679db82fbebc46d209b132a5a0952b6b
+  metadata.gz: 3a4b12838e8618ee607ff56a7170cda15e0f242c
+  data.tar.gz: 275bff96a672d49519d81b47fb97f00d1eda0ad4
 SHA512:
-  metadata.gz: 9b57ddecef7b4ed0654736a34dbf64af7a9096cb7a7b10bef11ed48bf4caa01540053177e9ae39c30bfe68c5eab81e8f755ee7030c5cfec2fe1cae4afed8f4da
-  data.tar.gz: e306a112cf15ccc092e93478226e35ce9f391fc456371791e4f0e74838efcfe05a7f26c0216ebd5e1a0fd93dbef1ee469c5479596189003e5bc1d12be56c4e0a
+  metadata.gz: c6a49eada64585f46811c22d6e76f3791ab24b4f8ef961aac2c7ff6bf6e19d764c54f35f519d6fad2eddbeff324bc9819fdecb318579cc55fc022b7ee73b702b
+  data.tar.gz: a835ff1a99236baf0ebcfca85069c1821b137cb9412feb873a277579cb55d1d052699e0782ccb9fddfdc7ed1c4caedc3b8be44d26d4066262c1d5492cc72e886

data/lib/simple_bioc/bioc_merger.rb

@@ -63,11 +63,11 @@ module BioCMerger
           p_d.text = p_d.sentences.map{|s| s.text}.join(" ") if blank?(p_d.text)
           p_d.sentences.each do |s|
             s.annotations.each do |a|
-              a.sentence = nil
+              a.clear_sentence
               p_d.annotations << a
             end
             s.relations.each do |r|
-              r.sentence = nil
+              r.clear_sentence
               p_d.relations << r
             end
           end

data/lib/simple_bioc/node_base.rb

@@ -13,5 +13,9 @@ module SimpleBioC
       @passage  = @sentence.passage unless @sentence.nil?
       @document = @passage.document unless @passage.nil?
     end
+
+    def clear_sentence
+      @sentence = nil
+    end
   end
 end

data/lib/simple_bioc/version.rb

@@ -1,3 +1,3 @@
 module SimpleBioC
-  VERSION = "0.0.10"
+  VERSION = "0.0.11"
 end

data/spec/file_check_spec.rb

@@ -26,6 +26,17 @@ describe "File Check" do
     col5 = SimpleBioC.from_xml("./xml/merge/output.xml")
   end 
 
+  it "should merge same documents successfully" do
+    col1 = SimpleBioC.from_xml("./xml/10330397_gene.xml")
+    col2 = SimpleBioC.from_xml("./xml/10330397_ppimention.xml")
+
+    SimpleBioC.merge(col1, col2)
+    output = SimpleBioC.to_xml(col1)
+    File.write("./xml/merge/output.xml", output)
+    puts "merge2"
+    col5 = SimpleBioC.from_xml("./xml/merge/output.xml")
+  end 
+
   it "should merge documents successfully with different order" do
     col4 = SimpleBioC.from_xml("./xml/merge/9864355.xml")
     col3 = SimpleBioC.from_xml("./xml/merge/9864355_1.xml")

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: simple_bioc
 version: !ruby/object:Gem::Version
-  version: 0.0.10
+  version: 0.0.11
 platform: ruby
 authors:
 - Dongseop Kwon
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-01-14 00:00:00.000000000 Z
+date: 2016-01-15 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: nokogiri