simple_bioc 0.0.10 → 0.0.11
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- checksums.yaml +4 -4
- data/lib/simple_bioc/bioc_merger.rb +2 -2
- data/lib/simple_bioc/node_base.rb +4 -0
- data/lib/simple_bioc/version.rb +1 -1
- data/spec/file_check_spec.rb +11 -0
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
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3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 3a4b12838e8618ee607ff56a7170cda15e0f242c
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4
|
+
data.tar.gz: 275bff96a672d49519d81b47fb97f00d1eda0ad4
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5
5
|
SHA512:
|
6
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-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
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+
metadata.gz: c6a49eada64585f46811c22d6e76f3791ab24b4f8ef961aac2c7ff6bf6e19d764c54f35f519d6fad2eddbeff324bc9819fdecb318579cc55fc022b7ee73b702b
|
7
|
+
data.tar.gz: a835ff1a99236baf0ebcfca85069c1821b137cb9412feb873a277579cb55d1d052699e0782ccb9fddfdc7ed1c4caedc3b8be44d26d4066262c1d5492cc72e886
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@@ -63,11 +63,11 @@ module BioCMerger
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|
63
63
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p_d.text = p_d.sentences.map{|s| s.text}.join(" ") if blank?(p_d.text)
|
64
64
|
p_d.sentences.each do |s|
|
65
65
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s.annotations.each do |a|
|
66
|
-
a.
|
66
|
+
a.clear_sentence
|
67
67
|
p_d.annotations << a
|
68
68
|
end
|
69
69
|
s.relations.each do |r|
|
70
|
-
r.
|
70
|
+
r.clear_sentence
|
71
71
|
p_d.relations << r
|
72
72
|
end
|
73
73
|
end
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data/lib/simple_bioc/version.rb
CHANGED
data/spec/file_check_spec.rb
CHANGED
@@ -26,6 +26,17 @@ describe "File Check" do
|
|
26
26
|
col5 = SimpleBioC.from_xml("./xml/merge/output.xml")
|
27
27
|
end
|
28
28
|
|
29
|
+
it "should merge same documents successfully" do
|
30
|
+
col1 = SimpleBioC.from_xml("./xml/10330397_gene.xml")
|
31
|
+
col2 = SimpleBioC.from_xml("./xml/10330397_ppimention.xml")
|
32
|
+
|
33
|
+
SimpleBioC.merge(col1, col2)
|
34
|
+
output = SimpleBioC.to_xml(col1)
|
35
|
+
File.write("./xml/merge/output.xml", output)
|
36
|
+
puts "merge2"
|
37
|
+
col5 = SimpleBioC.from_xml("./xml/merge/output.xml")
|
38
|
+
end
|
39
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+
|
29
40
|
it "should merge documents successfully with different order" do
|
30
41
|
col4 = SimpleBioC.from_xml("./xml/merge/9864355.xml")
|
31
42
|
col3 = SimpleBioC.from_xml("./xml/merge/9864355_1.xml")
|
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: simple_bioc
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.0.
|
4
|
+
version: 0.0.11
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Dongseop Kwon
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2016-01-
|
11
|
+
date: 2016-01-15 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: nokogiri
|