silicium 0.0.2
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- data/Gemfile +8 -0
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- data/docs/Object.html +117 -0
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- data/docs/js/searcher.js +229 -0
- data/docs/js/searcher.js.gz +0 -0
- data/docs/table_of_contents.html +608 -0
- data/lib/geometry.rb +236 -0
- data/lib/graph.rb +164 -0
- data/lib/numerical_integration.rb +147 -0
- data/lib/optimization.rb +144 -0
- data/lib/plotter.rb +96 -0
- data/lib/silicium/version.rb +3 -0
- data/lib/silicium.rb +5 -0
- data/lib/theory_of_probability.rb +227 -0
- data/silicium.gemspec +39 -0
- metadata +185 -0
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class Silicium::Graphs::OrientedGraph
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<pre><span class="ruby-comment"># File lib/graph.rb, line 23</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">add_vertex!</span>(<span class="ruby-identifier">vertex_id</span>)
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<span class="ruby-keyword">if</span> <span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">vertex_id</span>)
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<pre><span class="ruby-comment"># File lib/graph.rb, line 43</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">adjacted_with</span>(<span class="ruby-identifier">vertex</span>)
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<span class="ruby-identifier">raise</span> <span class="ruby-constant">GraphError</span>.<span class="ruby-identifier">new</span>(<span class="ruby-node">"Graph does not contain vertex #{vertex}"</span>)
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<span class="method-name">delete_edge!</span><span
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<pre><span class="ruby-comment"># File lib/graph.rb, line 125</span>
|
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|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">delete_edge!</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>)
|
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355
|
+
<span class="ruby-keyword">if</span> <span class="ruby-identifier">has_edge?</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>)
|
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<span class="ruby-ivar">@vertices</span>[<span class="ruby-identifier">from</span>].<span class="ruby-identifier">delete</span>(<span class="ruby-identifier">to</span>)
|
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+
<span class="ruby-ivar">@edge_labels</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-constant">Pair</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>))
|
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<span class="ruby-keyword">end</span>
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-delete_vertex-21" class="method-detail ">
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|
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<span class="method-name">delete_vertex!</span><span
|
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class="method-args">(vertex)</span>
|
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375
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</div>
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|
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|
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<div class="method-source-code" id="delete_vertex-21-source">
|
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|
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<pre><span class="ruby-comment"># File lib/graph.rb, line 111</span>
|
|
390
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">delete_vertex!</span>(<span class="ruby-identifier">vertex</span>)
|
|
391
|
+
<span class="ruby-keyword">if</span> <span class="ruby-identifier">has_vertex?</span>(<span class="ruby-identifier">vertex</span>)
|
|
392
|
+
<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">key</span><span class="ruby-operator">|</span>
|
|
393
|
+
<span class="ruby-identifier">delete_edge!</span>(<span class="ruby-identifier">key</span>, <span class="ruby-identifier">vertex</span>)
|
|
394
|
+
<span class="ruby-keyword">end</span>
|
|
395
|
+
<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-identifier">vertex</span>)
|
|
396
|
+
<span class="ruby-ivar">@vertex_labels</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-identifier">vertex</span>)
|
|
397
|
+
|
|
398
|
+
<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">keys</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">key</span><span class="ruby-operator">|</span>
|
|
399
|
+
<span class="ruby-ivar">@edge_labels</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-constant">Pair</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">vertex</span>, <span class="ruby-identifier">key</span>))
|
|
400
|
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<span class="ruby-keyword">end</span>
|
|
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|
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<span class="ruby-keyword">end</span>
|
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|
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<span class="ruby-keyword">end</span></pre>
|
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|
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|
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|
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|
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|
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</div>
|
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|
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|
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|
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|
|
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|
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<div id="method-i-edge_label_number" class="method-detail ">
|
|
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|
+
|
|
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|
+
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|
|
416
|
+
<span class="method-name">edge_label_number</span><span
|
|
417
|
+
class="method-args">()</span>
|
|
418
|
+
|
|
419
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
420
|
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|
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|
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</div>
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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<div class="method-source-code" id="edge_label_number-source">
|
|
432
|
+
<pre><span class="ruby-comment"># File lib/graph.rb, line 99</span>
|
|
433
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">edge_label_number</span>
|
|
434
|
+
<span class="ruby-ivar">@edge_labels</span>.<span class="ruby-identifier">count</span>
|
|
435
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
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</div>
|
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|
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|
|
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|
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|
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|
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|
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|
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</div>
|
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|
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|
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|
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|
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<div id="method-i-edge_number" class="method-detail ">
|
|
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|
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|
|
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|
+
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|
|
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|
+
<span class="method-name">edge_number</span><span
|
|
450
|
+
class="method-args">()</span>
|
|
451
|
+
|
|
452
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
453
|
+
|
|
454
|
+
</div>
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
|
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|
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|
|
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|
+
|
|
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|
+
|
|
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|
+
<div class="method-source-code" id="edge_number-source">
|
|
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|
+
<pre><span class="ruby-comment"># File lib/graph.rb, line 87</span>
|
|
466
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">edge_number</span>
|
|
467
|
+
<span class="ruby-identifier">res</span> = <span class="ruby-value">0</span>
|
|
468
|
+
<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">values</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">item</span><span class="ruby-operator">|</span>
|
|
469
|
+
<span class="ruby-identifier">res</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">item</span>.<span class="ruby-identifier">count</span>
|
|
470
|
+
<span class="ruby-keyword">end</span>
|
|
471
|
+
<span class="ruby-identifier">res</span>
|
|
472
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
+
</div>
|
|
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|
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|
|
475
|
+
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|
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|
|
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|
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|
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|
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|
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|
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|
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</div>
|
|
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|
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|
|
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|
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|
|
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|
+
<div id="method-i-get_edge_label" class="method-detail ">
|
|
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|
+
|
|
485
|
+
<div class="method-heading">
|
|
486
|
+
<span class="method-name">get_edge_label</span><span
|
|
487
|
+
class="method-args">(from, to)</span>
|
|
488
|
+
|
|
489
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
490
|
+
|
|
491
|
+
</div>
|
|
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|
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|
|
493
|
+
|
|
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|
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<div class="method-description">
|
|
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|
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|
|
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|
|
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|
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|
|
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|
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|
|
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|
+
|
|
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|
+
|
|
501
|
+
<div class="method-source-code" id="get_edge_label-source">
|
|
502
|
+
<pre><span class="ruby-comment"># File lib/graph.rb, line 67</span>
|
|
503
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">get_edge_label</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>)
|
|
504
|
+
<span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">from</span>) <span class="ruby-operator">||</span> <span class="ruby-operator">!</span> <span class="ruby-ivar">@vertices</span>[<span class="ruby-identifier">from</span>].<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">to</span>)
|
|
505
|
+
<span class="ruby-identifier">raise</span> <span class="ruby-constant">GraphError</span>.<span class="ruby-identifier">new</span>(<span class="ruby-node">"Graph does not contain edge (#{from}, #{to})"</span>)
|
|
506
|
+
<span class="ruby-keyword">end</span>
|
|
507
|
+
|
|
508
|
+
<span class="ruby-ivar">@edge_labels</span>[<span class="ruby-constant">Pair</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>)]
|
|
509
|
+
<span class="ruby-keyword">end</span></pre>
|
|
510
|
+
</div>
|
|
511
|
+
|
|
512
|
+
</div>
|
|
513
|
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|
|
514
|
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|
|
515
|
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|
|
516
|
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|
|
517
|
+
</div>
|
|
518
|
+
|
|
519
|
+
|
|
520
|
+
<div id="method-i-get_vertex_label" class="method-detail ">
|
|
521
|
+
|
|
522
|
+
<div class="method-heading">
|
|
523
|
+
<span class="method-name">get_vertex_label</span><span
|
|
524
|
+
class="method-args">(vertex)</span>
|
|
525
|
+
|
|
526
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
527
|
+
|
|
528
|
+
</div>
|
|
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|
+
|
|
530
|
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|
|
531
|
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<div class="method-description">
|
|
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|
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|
|
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|
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|
|
534
|
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|
|
535
|
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|
|
536
|
+
|
|
537
|
+
|
|
538
|
+
<div class="method-source-code" id="get_vertex_label-source">
|
|
539
|
+
<pre><span class="ruby-comment"># File lib/graph.rb, line 75</span>
|
|
540
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">get_vertex_label</span>(<span class="ruby-identifier">vertex</span>)
|
|
541
|
+
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">vertex</span>)
|
|
542
|
+
<span class="ruby-identifier">raise</span> <span class="ruby-constant">GraphError</span>.<span class="ruby-identifier">new</span>(<span class="ruby-node">"Graph does not contain vertex #{vertex}"</span>)
|
|
543
|
+
<span class="ruby-keyword">end</span>
|
|
544
|
+
|
|
545
|
+
<span class="ruby-ivar">@vertex_labels</span>[<span class="ruby-identifier">vertex</span>]
|
|
546
|
+
<span class="ruby-keyword">end</span></pre>
|
|
547
|
+
</div>
|
|
548
|
+
|
|
549
|
+
</div>
|
|
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|
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|
|
551
|
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|
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552
|
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|
|
553
|
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|
|
554
|
+
</div>
|
|
555
|
+
|
|
556
|
+
|
|
557
|
+
<div id="method-i-has_edge-3F" class="method-detail ">
|
|
558
|
+
|
|
559
|
+
<div class="method-heading">
|
|
560
|
+
<span class="method-name">has_edge?</span><span
|
|
561
|
+
class="method-args">(from, to)</span>
|
|
562
|
+
|
|
563
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
564
|
+
|
|
565
|
+
</div>
|
|
566
|
+
|
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567
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|
|
568
|
+
<div class="method-description">
|
|
569
|
+
|
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570
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571
|
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|
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|
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<div class="method-source-code" id="has_edge-3F-source">
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<pre><span class="ruby-comment"># File lib/graph.rb, line 107</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">has_edge?</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>)
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<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">from</span>) <span class="ruby-operator">&&</span> <span class="ruby-ivar">@vertices</span>[<span class="ruby-identifier">from</span>].<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">to</span>)
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-has_vertex-3F" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">has_vertex?</span><span
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class="method-args">(vertex)</span>
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<span class="method-click-advice">click to toggle source</span>
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<div class="method-source-code" id="has_vertex-3F-source">
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<pre><span class="ruby-comment"># File lib/graph.rb, line 103</span>
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610
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">has_vertex?</span>(<span class="ruby-identifier">vertex</span>)
|
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611
|
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<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">vertex</span>)
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-label_edge-21" class="method-detail ">
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<span class="method-name">label_edge!</span><span
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class="method-args">(from, to, label)</span>
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<span class="method-click-advice">click to toggle source</span>
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<pre><span class="ruby-comment"># File lib/graph.rb, line 51</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">label_edge!</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>, <span class="ruby-identifier">label</span>)
|
|
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|
+
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">from</span>) <span class="ruby-operator">&&</span> <span class="ruby-ivar">@vertices</span>[<span class="ruby-identifier">from</span>].<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">to</span>)
|
|
645
|
+
<span class="ruby-identifier">raise</span> <span class="ruby-constant">GraphError</span>.<span class="ruby-identifier">new</span>(<span class="ruby-node">"Graph does not contain edge (#{from}, #{to})"</span>)
|
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646
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<span class="ruby-keyword">end</span>
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|
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<span class="ruby-ivar">@edge_labels</span>[<span class="ruby-constant">Pair</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">from</span>, <span class="ruby-identifier">to</span>)] = <span class="ruby-identifier">label</span>
|
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-label_vertex-21" class="method-detail ">
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<span class="method-name">label_vertex!</span><span
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class="method-args">(vertex, label)</span>
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665
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</div>
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<div class="method-source-code" id="label_vertex-21-source">
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<pre><span class="ruby-comment"># File lib/graph.rb, line 59</span>
|
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|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">label_vertex!</span>(<span class="ruby-identifier">vertex</span>, <span class="ruby-identifier">label</span>)
|
|
681
|
+
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">has_key?</span>(<span class="ruby-identifier">vertex</span>)
|
|
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|
+
<span class="ruby-identifier">raise</span> <span class="ruby-constant">GraphError</span>.<span class="ruby-identifier">new</span>(<span class="ruby-node">"Graph does not contain vertex #{vertex}"</span>)
|
|
683
|
+
<span class="ruby-keyword">end</span>
|
|
684
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|
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685
|
+
<span class="ruby-ivar">@vertex_labels</span>[<span class="ruby-identifier">vertex</span>] = <span class="ruby-identifier">label</span>
|
|
686
|
+
<span class="ruby-keyword">end</span></pre>
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</div>
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</div>
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<div id="method-i-vertex_label_number" class="method-detail ">
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|
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+
<div class="method-heading">
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700
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+
<span class="method-name">vertex_label_number</span><span
|
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701
|
+
class="method-args">()</span>
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702
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</div>
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<pre><span class="ruby-comment"># File lib/graph.rb, line 95</span>
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717
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+
<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">vertex_label_number</span>
|
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718
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+
<span class="ruby-ivar">@vertex_labels</span>.<span class="ruby-identifier">count</span>
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<span class="ruby-keyword">end</span></pre>
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<pre><span class="ruby-comment"># File lib/graph.rb, line 83</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier ruby-title">vertex_number</span>
|
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+
<span class="ruby-ivar">@vertices</span>.<span class="ruby-identifier">count</span>
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<footer id="validator-badges" role="contentinfo">
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<p><a href="https://validator.w3.org/check/referer">Validate</a>
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<p>Generated by <a href="https://ruby.github.io/rdoc/">RDoc</a> 6.2.0.
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<p>Based on <a href="http://deveiate.org/projects/Darkfish-RDoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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