sequenceserver 2.0.0 → 2.2.0
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Potentially problematic release.
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- checksums.yaml +4 -4
- data/bin/sequenceserver +7 -2
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/formatter.rb +13 -4
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +69 -33
- data/lib/sequenceserver/config.rb +52 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/makeblastdb.rb +80 -72
- data/lib/sequenceserver/pool.rb +1 -1
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/report.rb +1 -5
- data/lib/sequenceserver/routes.rb +92 -9
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +3 -3
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +9 -2
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +369 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/advanced_parameters.spec.js +36 -0
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/sequences.js +32 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +155 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +58 -0
- data/public/js/visualisation_helpers.js +1 -1
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/11.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/17.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
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|
98
|
-
var b = browserify('main.js')
|
99
|
-
, output = fs.createWriteStream('bundle.js')
|
100
|
-
|
101
|
-
b.transform(envify({
|
102
|
-
NODE_ENV: 'development'
|
103
|
-
}))
|
104
|
-
b.bundle().pipe(output)
|
105
|
-
```
|
106
|
-
|
107
|
-
## Purging `process.env` ##
|
108
|
-
|
109
|
-
By default, environment variables that are not defined will be left untouched.
|
110
|
-
This is because in some cases, you might want to run an envify transform over
|
111
|
-
your source more than once, and removing these values would make that
|
112
|
-
impossible.
|
113
|
-
|
114
|
-
However, if any references to `process.env` are remaining after transforming
|
115
|
-
your source with envify, browserify will automatically insert its shim for
|
116
|
-
Node's process object, which will increase the size of your bundle. This weighs
|
117
|
-
in at around 2KB, so if you're trying to be conservative with your bundle size
|
118
|
-
you can "purge" these remaining variables such that any missing ones are simply
|
119
|
-
replaced with undefined.
|
120
|
-
|
121
|
-
To do so through the command-line, simply use the subarg syntax and include
|
122
|
-
`purge` after `envify`, e.g.:
|
123
|
-
|
124
|
-
``` bash
|
125
|
-
browserify index.js -t [ envify purge --NODE_ENV development ]
|
126
|
-
```
|
127
|
-
|
128
|
-
Or if you're using the module API, you can pass `_: "purge"` into your
|
129
|
-
arguments like so:
|
130
|
-
|
131
|
-
``` javascript
|
132
|
-
b.transform(envify({
|
133
|
-
_: 'purge'
|
134
|
-
, NODE_ENV: 'development'
|
135
|
-
}))
|
136
|
-
```
|
137
|
-
|
138
|
-
## Contributors ##
|
139
|
-
|
140
|
-
* [hughsk](http://github.com/hughsk)
|
141
|
-
* [benjamn](http://github.com/benjamn)
|
142
|
-
* [zag2art](http://github.com/zag2art)
|
143
|
-
* [bjoerge](http://github.com/bjoerge)
|
144
|
-
* [andreypopp](http://github.com/andreypopp)
|
145
|
-
* [jupl](http://github.com/jupl)
|
@@ -1,17 +0,0 @@
|
|
1
|
-
#!/usr/bin/env node
|
2
|
-
|
3
|
-
var envify = require('../')
|
4
|
-
, fs = require('fs')
|
5
|
-
|
6
|
-
if (process.argv[2]) {
|
7
|
-
fs.createReadStream(process.argv[2], { encoding: 'utf8' })
|
8
|
-
.pipe(envify(process.argv[2]))
|
9
|
-
.pipe(process.stdout)
|
10
|
-
} else {
|
11
|
-
process.stdin.resume()
|
12
|
-
process.stdin
|
13
|
-
.pipe(envify(__filename))
|
14
|
-
.pipe(process.stdout)
|
15
|
-
}
|
16
|
-
|
17
|
-
|
@@ -1,33 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var through = require("through"),
|
4
|
-
jstransform = require("jstransform"),
|
5
|
-
createVisitors = require("./visitors");
|
6
|
-
var processEnvPattern = /\bprocess\.env\b/;
|
7
|
-
module.exports = function(rootEnv) {
|
8
|
-
rootEnv = rootEnv || process.env || {};
|
9
|
-
return function envify(file, argv) {
|
10
|
-
if (/\.json$/.test(file))
|
11
|
-
return through();
|
12
|
-
var buffer = [];
|
13
|
-
argv = argv || {};
|
14
|
-
return through(write, flush);
|
15
|
-
function write(data) {
|
16
|
-
buffer.push(data);
|
17
|
-
}
|
18
|
-
function flush() {
|
19
|
-
var source = buffer.join('');
|
20
|
-
if (processEnvPattern.test(source)) {
|
21
|
-
try {
|
22
|
-
var visitors = createVisitors([argv, rootEnv]);
|
23
|
-
source = jstransform.transform(visitors, source).code;
|
24
|
-
} catch (err) {
|
25
|
-
return this.emit('error', err);
|
26
|
-
}
|
27
|
-
}
|
28
|
-
this.queue(source);
|
29
|
-
this.queue(null);
|
30
|
-
}
|
31
|
-
};
|
32
|
-
};
|
33
|
-
})(require("process"));
|
@@ -1,35 +0,0 @@
|
|
1
|
-
{
|
2
|
-
"name": "envify",
|
3
|
-
"version": "3.4.0",
|
4
|
-
"description": "Selectively replace Node-style environment variables with plain strings.",
|
5
|
-
"main": "index.js",
|
6
|
-
"scripts": {
|
7
|
-
"test": "node test.js | tap-spec"
|
8
|
-
},
|
9
|
-
"bin": {
|
10
|
-
"envify": "bin/envify"
|
11
|
-
},
|
12
|
-
"repository": {
|
13
|
-
"type": "git",
|
14
|
-
"url": "git://github.com/hughsk/envify.git"
|
15
|
-
},
|
16
|
-
"author": "Hugh Kennedy <hughskennedy@gmail.com> (http://hughskennedy.com/)",
|
17
|
-
"license": "MIT",
|
18
|
-
"devDependencies": {
|
19
|
-
"tap-spec": "^1.0.1",
|
20
|
-
"tape": "~2.3.2"
|
21
|
-
},
|
22
|
-
"dependencies": {
|
23
|
-
"through": "~2.3.4",
|
24
|
-
"jstransform": "^10.0.1"
|
25
|
-
},
|
26
|
-
"keywords": [
|
27
|
-
"environment",
|
28
|
-
"variables",
|
29
|
-
"browserify",
|
30
|
-
"browserify-transform",
|
31
|
-
"transform",
|
32
|
-
"source",
|
33
|
-
"configuration"
|
34
|
-
]
|
35
|
-
}
|
@@ -1,33 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var Syntax = require("jstransform").Syntax;
|
4
|
-
var utils = require("jstransform/src/utils");
|
5
|
-
function create(envs) {
|
6
|
-
var args = [].concat(envs[0]._ || []).concat(envs[1]._ || []);
|
7
|
-
var purge = args.indexOf('purge') !== -1;
|
8
|
-
function visitProcessEnv(traverse, node, path, state) {
|
9
|
-
var key = node.property.name || node.property.value;
|
10
|
-
for (var i = 0; i < envs.length; i++) {
|
11
|
-
var value = envs[i][key];
|
12
|
-
if (value !== undefined) {
|
13
|
-
replaceEnv(node, state, value);
|
14
|
-
return false;
|
15
|
-
}
|
16
|
-
}
|
17
|
-
if (purge) {
|
18
|
-
replaceEnv(node, state, undefined);
|
19
|
-
}
|
20
|
-
return false;
|
21
|
-
}
|
22
|
-
function replaceEnv(node, state, value) {
|
23
|
-
utils.catchup(node.range[0], state);
|
24
|
-
utils.append(JSON.stringify(value), state);
|
25
|
-
utils.move(node.range[1], state);
|
26
|
-
}
|
27
|
-
visitProcessEnv.test = function(node, path, state) {
|
28
|
-
return (node.type === Syntax.MemberExpression && !(path[0].type === Syntax.AssignmentExpression && path[0].left === node) && node.property.type === (node.computed ? Syntax.Literal : Syntax.Identifier) && node.object.computed === false && node.object.type === Syntax.MemberExpression && node.object.object.type === Syntax.Identifier && node.object.object.name === 'process' && node.object.property.type === Syntax.Identifier && node.object.property.name === 'env');
|
29
|
-
};
|
30
|
-
return [visitProcessEnv];
|
31
|
-
}
|
32
|
-
module.exports = create;
|
33
|
-
})(require("process"));
|
@@ -1 +0,0 @@
|
|
1
|
-
module.exports = require("npm:envify@3.4.0/index");
|
@@ -1,90 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var fs,
|
4
|
-
esprima,
|
5
|
-
fname,
|
6
|
-
content,
|
7
|
-
options,
|
8
|
-
syntax;
|
9
|
-
if (typeof require === 'function') {
|
10
|
-
fs = require("fs");
|
11
|
-
esprima = require("esprima");
|
12
|
-
} else if (typeof load === 'function') {
|
13
|
-
try {
|
14
|
-
load('esprima.js');
|
15
|
-
} catch (e) {
|
16
|
-
load('../esprima.js');
|
17
|
-
}
|
18
|
-
}
|
19
|
-
if (typeof console === 'undefined' && typeof process === 'undefined') {
|
20
|
-
console = {log: print};
|
21
|
-
fs = {readFileSync: readFile};
|
22
|
-
process = {
|
23
|
-
argv: arguments,
|
24
|
-
exit: quit
|
25
|
-
};
|
26
|
-
process.argv.unshift('esparse.js');
|
27
|
-
process.argv.unshift('rhino');
|
28
|
-
}
|
29
|
-
function showUsage() {
|
30
|
-
console.log('Usage:');
|
31
|
-
console.log(' esparse [options] file.js');
|
32
|
-
console.log();
|
33
|
-
console.log('Available options:');
|
34
|
-
console.log();
|
35
|
-
console.log(' --comment Gather all line and block comments in an array');
|
36
|
-
console.log(' --loc Include line-column location info for each syntax node');
|
37
|
-
console.log(' --range Include index-based range for each syntax node');
|
38
|
-
console.log(' --raw Display the raw value of literals');
|
39
|
-
console.log(' --tokens List all tokens in an array');
|
40
|
-
console.log(' --tolerant Tolerate errors on a best-effort basis (experimental)');
|
41
|
-
console.log(' -v, --version Shows program version');
|
42
|
-
console.log();
|
43
|
-
process.exit(1);
|
44
|
-
}
|
45
|
-
if (process.argv.length <= 2) {
|
46
|
-
showUsage();
|
47
|
-
}
|
48
|
-
options = {};
|
49
|
-
process.argv.splice(2).forEach(function(entry) {
|
50
|
-
if (entry === '-h' || entry === '--help') {
|
51
|
-
showUsage();
|
52
|
-
} else if (entry === '-v' || entry === '--version') {
|
53
|
-
console.log('ECMAScript Parser (using Esprima version', esprima.version, ')');
|
54
|
-
console.log();
|
55
|
-
process.exit(0);
|
56
|
-
} else if (entry === '--comment') {
|
57
|
-
options.comment = true;
|
58
|
-
} else if (entry === '--loc') {
|
59
|
-
options.loc = true;
|
60
|
-
} else if (entry === '--range') {
|
61
|
-
options.range = true;
|
62
|
-
} else if (entry === '--raw') {
|
63
|
-
options.raw = true;
|
64
|
-
} else if (entry === '--tokens') {
|
65
|
-
options.tokens = true;
|
66
|
-
} else if (entry === '--tolerant') {
|
67
|
-
options.tolerant = true;
|
68
|
-
} else if (entry.slice(0, 2) === '--') {
|
69
|
-
console.log('Error: unknown option ' + entry + '.');
|
70
|
-
process.exit(1);
|
71
|
-
} else if (typeof fname === 'string') {
|
72
|
-
console.log('Error: more than one input file.');
|
73
|
-
process.exit(1);
|
74
|
-
} else {
|
75
|
-
fname = entry;
|
76
|
-
}
|
77
|
-
});
|
78
|
-
if (typeof fname !== 'string') {
|
79
|
-
console.log('Error: no input file.');
|
80
|
-
process.exit(1);
|
81
|
-
}
|
82
|
-
try {
|
83
|
-
content = fs.readFileSync(fname, 'utf-8');
|
84
|
-
syntax = esprima.parse(content, options);
|
85
|
-
console.log(JSON.stringify(syntax, null, 4));
|
86
|
-
} catch (e) {
|
87
|
-
console.log('Error: ' + e.message);
|
88
|
-
process.exit(1);
|
89
|
-
}
|
90
|
-
})(require("process"));
|
@@ -1,145 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var fs,
|
4
|
-
system,
|
5
|
-
esprima,
|
6
|
-
options,
|
7
|
-
fnames,
|
8
|
-
count;
|
9
|
-
if (typeof esprima === 'undefined') {
|
10
|
-
if (typeof phantom === 'object') {
|
11
|
-
fs = require("fs");
|
12
|
-
system = require("system");
|
13
|
-
esprima = require("./esprima");
|
14
|
-
} else if (typeof require === 'function') {
|
15
|
-
fs = require("fs");
|
16
|
-
esprima = require("esprima");
|
17
|
-
} else if (typeof load === 'function') {
|
18
|
-
try {
|
19
|
-
load('esprima.js');
|
20
|
-
} catch (e) {
|
21
|
-
load('../esprima.js');
|
22
|
-
}
|
23
|
-
}
|
24
|
-
}
|
25
|
-
if (typeof phantom === 'object') {
|
26
|
-
fs.readFileSync = fs.read;
|
27
|
-
process = {
|
28
|
-
argv: [].slice.call(system.args),
|
29
|
-
exit: phantom.exit
|
30
|
-
};
|
31
|
-
process.argv.unshift('phantomjs');
|
32
|
-
}
|
33
|
-
if (typeof console === 'undefined' && typeof process === 'undefined') {
|
34
|
-
console = {log: print};
|
35
|
-
fs = {readFileSync: readFile};
|
36
|
-
process = {
|
37
|
-
argv: arguments,
|
38
|
-
exit: quit
|
39
|
-
};
|
40
|
-
process.argv.unshift('esvalidate.js');
|
41
|
-
process.argv.unshift('rhino');
|
42
|
-
}
|
43
|
-
function showUsage() {
|
44
|
-
console.log('Usage:');
|
45
|
-
console.log(' esvalidate [options] file.js');
|
46
|
-
console.log();
|
47
|
-
console.log('Available options:');
|
48
|
-
console.log();
|
49
|
-
console.log(' --format=type Set the report format, plain (default) or junit');
|
50
|
-
console.log(' -v, --version Print program version');
|
51
|
-
console.log();
|
52
|
-
process.exit(1);
|
53
|
-
}
|
54
|
-
if (process.argv.length <= 2) {
|
55
|
-
showUsage();
|
56
|
-
}
|
57
|
-
options = {format: 'plain'};
|
58
|
-
fnames = [];
|
59
|
-
process.argv.splice(2).forEach(function(entry) {
|
60
|
-
if (entry === '-h' || entry === '--help') {
|
61
|
-
showUsage();
|
62
|
-
} else if (entry === '-v' || entry === '--version') {
|
63
|
-
console.log('ECMAScript Validator (using Esprima version', esprima.version, ')');
|
64
|
-
console.log();
|
65
|
-
process.exit(0);
|
66
|
-
} else if (entry.slice(0, 9) === '--format=') {
|
67
|
-
options.format = entry.slice(9);
|
68
|
-
if (options.format !== 'plain' && options.format !== 'junit') {
|
69
|
-
console.log('Error: unknown report format ' + options.format + '.');
|
70
|
-
process.exit(1);
|
71
|
-
}
|
72
|
-
} else if (entry.slice(0, 2) === '--') {
|
73
|
-
console.log('Error: unknown option ' + entry + '.');
|
74
|
-
process.exit(1);
|
75
|
-
} else {
|
76
|
-
fnames.push(entry);
|
77
|
-
}
|
78
|
-
});
|
79
|
-
if (fnames.length === 0) {
|
80
|
-
console.log('Error: no input file.');
|
81
|
-
process.exit(1);
|
82
|
-
}
|
83
|
-
if (options.format === 'junit') {
|
84
|
-
console.log('<?xml version="1.0" encoding="UTF-8"?>');
|
85
|
-
console.log('<testsuites>');
|
86
|
-
}
|
87
|
-
count = 0;
|
88
|
-
fnames.forEach(function(fname) {
|
89
|
-
var content,
|
90
|
-
timestamp,
|
91
|
-
syntax,
|
92
|
-
name;
|
93
|
-
try {
|
94
|
-
content = fs.readFileSync(fname, 'utf-8');
|
95
|
-
if (content[0] === '#' && content[1] === '!') {
|
96
|
-
content = '//' + content.substr(2, content.length);
|
97
|
-
}
|
98
|
-
timestamp = Date.now();
|
99
|
-
syntax = esprima.parse(content, {tolerant: true});
|
100
|
-
if (options.format === 'junit') {
|
101
|
-
name = fname;
|
102
|
-
if (name.lastIndexOf('/') >= 0) {
|
103
|
-
name = name.slice(name.lastIndexOf('/') + 1);
|
104
|
-
}
|
105
|
-
console.log('<testsuite name="' + fname + '" errors="0" ' + ' failures="' + syntax.errors.length + '" ' + ' tests="' + syntax.errors.length + '" ' + ' time="' + Math.round((Date.now() - timestamp) / 1000) + '">');
|
106
|
-
syntax.errors.forEach(function(error) {
|
107
|
-
var msg = error.message;
|
108
|
-
msg = msg.replace(/^Line\ [0-9]*\:\ /, '');
|
109
|
-
console.log(' <testcase name="Line ' + error.lineNumber + ': ' + msg + '" ' + ' time="0">');
|
110
|
-
console.log(' <error type="SyntaxError" message="' + error.message + '">' + error.message + '(' + name + ':' + error.lineNumber + ')' + '</error>');
|
111
|
-
console.log(' </testcase>');
|
112
|
-
});
|
113
|
-
console.log('</testsuite>');
|
114
|
-
} else if (options.format === 'plain') {
|
115
|
-
syntax.errors.forEach(function(error) {
|
116
|
-
var msg = error.message;
|
117
|
-
msg = msg.replace(/^Line\ [0-9]*\:\ /, '');
|
118
|
-
msg = fname + ':' + error.lineNumber + ': ' + msg;
|
119
|
-
console.log(msg);
|
120
|
-
++count;
|
121
|
-
});
|
122
|
-
}
|
123
|
-
} catch (e) {
|
124
|
-
++count;
|
125
|
-
if (options.format === 'junit') {
|
126
|
-
console.log('<testsuite name="' + fname + '" errors="1" failures="0" tests="1" ' + ' time="' + Math.round((Date.now() - timestamp) / 1000) + '">');
|
127
|
-
console.log(' <testcase name="' + e.message + '" ' + ' time="0">');
|
128
|
-
console.log(' <error type="ParseError" message="' + e.message + '">' + e.message + '(' + fname + ((e.lineNumber) ? ':' + e.lineNumber : '') + ')</error>');
|
129
|
-
console.log(' </testcase>');
|
130
|
-
console.log('</testsuite>');
|
131
|
-
} else {
|
132
|
-
console.log('Error: ' + e.message);
|
133
|
-
}
|
134
|
-
}
|
135
|
-
});
|
136
|
-
if (options.format === 'junit') {
|
137
|
-
console.log('</testsuites>');
|
138
|
-
}
|
139
|
-
if (count > 0) {
|
140
|
-
process.exit(1);
|
141
|
-
}
|
142
|
-
if (count === 0 && typeof phantom === 'object') {
|
143
|
-
process.exit(0);
|
144
|
-
}
|
145
|
-
})(require("process"));
|