sequenceserver 2.0.0 → 2.2.0
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Potentially problematic release.
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- checksums.yaml +4 -4
- data/bin/sequenceserver +7 -2
- data/lib/sequenceserver/api_errors.rb +24 -2
- data/lib/sequenceserver/blast/formatter.rb +13 -4
- data/lib/sequenceserver/blast/job.rb +41 -7
- data/lib/sequenceserver/blast/report.rb +69 -33
- data/lib/sequenceserver/config.rb +52 -27
- data/lib/sequenceserver/job.rb +13 -3
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/makeblastdb.rb +80 -72
- data/lib/sequenceserver/pool.rb +1 -1
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/report.rb +1 -5
- data/lib/sequenceserver/routes.rb +92 -9
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +3 -3
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +9 -2
- data/public/config.js +149 -143
- data/public/css/sequenceserver.css +44 -3
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +16 -8
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +42 -113
- data/public/js/dnd.js +164 -0
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +80 -67
- data/public/js/hits_overview.js +2 -2
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +319 -59
- data/public/js/report.js +369 -269
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -1011
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +262 -83
- data/public/js/tests/advanced_parameters.spec.js +36 -0
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/sequences.js +32 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +155 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +58 -0
- data/public/js/visualisation_helpers.js +1 -1
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -15
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
- data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
- data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
- data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
- data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
- data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
- data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
- data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
- data/public/vendor/npm/react-dom@18.0.0.js +1 -0
- data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react@18.0.0/README.md +13 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.development.js +837 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.production.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-dev-runtime.profiling.min.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.development.js +849 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.production.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react-jsx-runtime.profiling.min.js +38 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.development.js +1746 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.production.min.js +26 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.development.js +10 -0
- data/public/vendor/npm/react@18.0.0/cjs/react.shared-subset.production.min.js +12 -0
- data/public/vendor/npm/react@18.0.0/index.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-dev-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/jsx-runtime.js +9 -0
- data/public/vendor/npm/react@18.0.0/package.json +47 -0
- data/public/vendor/npm/react@18.0.0/react.shared-subset.js +9 -0
- data/public/vendor/npm/react@18.0.0/umd/react.development.js +2186 -0
- data/public/vendor/npm/react@18.0.0/umd/react.production.min.js +33 -0
- data/public/vendor/npm/react@18.0.0/umd/react.profiling.min.js +33 -0
- data/public/vendor/npm/react@18.0.0.js +1 -0
- data/public/vendor/npm/readable-stream@1.1.14/LICENSE +18 -0
- data/public/vendor/npm/readable-stream@1.1.14/duplex.js +2 -0
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_duplex.js +5 -5
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_passthrough.js +3 -3
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_readable.js +10 -10
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_transform.js +4 -4
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/lib/_stream_writable.js +6 -6
- data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/package.json +1 -1
- data/public/vendor/npm/readable-stream@1.1.14/passthrough.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/readable.js +13 -0
- data/public/vendor/npm/readable-stream@1.1.14/transform.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14/writable.js +2 -0
- data/public/vendor/npm/readable-stream@1.1.14.js +1 -0
- data/public/vendor/npm/scheduler@0.21.0/LICENSE +21 -0
- data/public/vendor/npm/scheduler@0.21.0/README.md +9 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.development.js +530 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_mock.production.min.js +20 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.development.js +153 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler-unstable_post_task.production.min.js +14 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.development.js +444 -0
- data/public/vendor/npm/scheduler@0.21.0/cjs/scheduler.production.min.js +19 -0
- data/public/vendor/npm/scheduler@0.21.0/index.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/package.json +36 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.development.js +701 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler-unstable_mock.production.min.js +21 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.development.js +154 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.production.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/umd/scheduler.profiling.min.js +148 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_mock.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0/unstable_post_task.js +9 -0
- data/public/vendor/npm/scheduler@0.21.0.js +1 -0
- data/public/vendor/npm/stream-browserify@1.0.0/index.js +7 -7
- data/public/vendor/npm/stream-browserify@1.0.0/test/buf.js +5 -5
- data/public/vendor/npm/stream-browserify@1.0.0.js +1 -1
- data/public/vendor/npm/string_decoder@0.10.31/index.js +2 -2
- data/public/vendor/npm/string_decoder@0.10.31.js +1 -1
- data/public/vendor/npm/util@0.10.3/support/isBuffer.js +1 -1
- data/public/vendor/npm/util@0.10.3/test/browser/inspect.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/browser/is.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/debug.js +4 -4
- data/public/vendor/npm/util@0.10.3/test/node/format.js +2 -2
- data/public/vendor/npm/util@0.10.3/test/node/inspect.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/log.js +3 -3
- data/public/vendor/npm/util@0.10.3/test/node/util.js +3 -3
- data/public/vendor/npm/util@0.10.3/util.js +3 -3
- data/public/vendor/npm/util@0.10.3.js +1 -1
- data/public/vendor/npm/vm-browserify@0.0.4/LICENSE +18 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/bundle.js +376 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/entry.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/index.html +9 -0
- data/public/vendor/npm/vm-browserify@0.0.4/example/run/server.js +6 -0
- data/public/vendor/npm/vm-browserify@0.0.4/index.js +139 -0
- data/public/vendor/npm/vm-browserify@0.0.4/package.json +46 -0
- data/public/vendor/npm/vm-browserify@0.0.4/readme.markdown +67 -0
- data/public/vendor/npm/vm-browserify@0.0.4/test/vm.js +34 -0
- data/public/vendor/npm/vm-browserify@0.0.4.js +1 -0
- data/public/vendor/npm/webshim@1.15.8/Gruntfile.js +4 -4
- data/public/vendor/npm/webshim@1.15.8/build/combobuild.js +2 -2
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/color-picker.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/10.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/11.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/combos/17.js +1 -1
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- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/es6.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/excanvas.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/form-number-date-ui.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-html4.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/moxie/js/moxie-swf.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/dev/shims/sizzle.js +1 -1
- data/public/vendor/npm/webshim@1.15.8/js-webshim/minified/shims/es6.js +1 -1
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var ReactDOMSelection = require("./ReactDOMSelection");
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var ReactInputSelection = {
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hasSelectionCapabilities: function(elem) {
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selection = {
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selection = {
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("production" !== process.env.NODE_ENV ? invariant(isValidID(ancestorID) && isValidID(destinationID), 'getNextDescendantID(%s, %s): Received an invalid React DOM ID.', ancestorID, destinationID) : invariant(isValidID(ancestorID) && isValidID(destinationID)));
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("production" !== process.env.NODE_ENV ? invariant(isAncestorIDOf(ancestorID, destinationID), 'getNextDescendantID(...): React has made an invalid assumption about ' + 'the DOM hierarchy. Expected `%s` to be an ancestor of `%s`.', ancestorID, destinationID) : invariant(isAncestorIDOf(ancestorID, destinationID)));
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("production" !== process.env.NODE_ENV ? invariant(isValidID(longestCommonID), 'getFirstCommonAncestorID(%s, %s): Expected a valid React DOM ID: %s', oneID, twoID, longestCommonID) : invariant(isValidID(longestCommonID)));
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stop = stop || '';
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("production" !== process.env.NODE_ENV ? invariant(traverseUp || isAncestorIDOf(start, stop), 'traverseParentPath(%s, %s, ...): Cannot traverse from two IDs that do ' + 'not have a parent path.', start, stop) : invariant(traverseUp || isAncestorIDOf(start, stop)));
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("production" !== process.env.NODE_ENV ? invariant(depth++ < MAX_TREE_DEPTH, 'traverseParentPath(%s, %s, ...): Detected an infinite loop while ' + 'traversing the React DOM ID tree. This may be due to malformed IDs: %s', start, stop) : invariant(depth++ < MAX_TREE_DEPTH));
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traverseEnterLeave: function(leaveID, enterID, cb, upArg, downArg) {
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* This source code is licensed under the BSD-style license found in the
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* LICENSE file in the root directory of this source tree. An additional grant
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* @providesModule ReactInstanceMap
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/**
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* `ReactInstanceMap` maintains a mapping from a public facing stateful
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* instance (key) and the internal representation (value). This allows public
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* methods to accept the user facing instance as an argument and map them back
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* to internal methods.
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*/
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// TODO: Replace this with ES6: var ReactInstanceMap = new Map();
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var ReactInstanceMap = {
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/**
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* This API should be called `delete` but we'd have to make sure to always
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* transform these to strings for IE support. When this transform is fully
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* supported we can rename it.
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},
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get: function(key) {
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},
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has: function(key) {
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return key._reactInternalInstance !== undefined;
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},
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set: function(key, value) {
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key._reactInternalInstance = value;
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}
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};
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module.exports = ReactInstanceMap;
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/* */
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'use strict';
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var React = require("./React");
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function ReactLink(value, requestChange) {
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this.value = value;
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this.requestChange = requestChange;
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}
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function createLinkTypeChecker(linkType) {
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var shapes = {
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value: typeof linkType === 'undefined' ? React.PropTypes.any.isRequired : linkType.isRequired,
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requestChange: React.PropTypes.func.isRequired
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};
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}
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ReactLink.PropTypes = {link: createLinkTypeChecker};
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module.exports = ReactLink;
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/* */
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'use strict';
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var adler32 = require("./adler32");
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var ReactMarkupChecksum = {
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CHECKSUM_ATTR_NAME: 'data-react-checksum',
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addChecksumToMarkup: function(markup) {
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var checksum = adler32(markup);
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return markup.replace('>', ' ' + ReactMarkupChecksum.CHECKSUM_ATTR_NAME + '="' + checksum + '">');
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},
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canReuseMarkup: function(markup, element) {
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var existingChecksum = element.getAttribute(ReactMarkupChecksum.CHECKSUM_ATTR_NAME);
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existingChecksum = existingChecksum && parseInt(existingChecksum, 10);
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var markupChecksum = adler32(markup);
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|
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return markupChecksum === existingChecksum;
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}
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};
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|
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/* */
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(function(process) {
|
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'use strict';
|
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var DOMProperty = require("./DOMProperty");
|
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var ReactBrowserEventEmitter = require("./ReactBrowserEventEmitter");
|
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var ReactCurrentOwner = require("./ReactCurrentOwner");
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var ReactElement = require("./ReactElement");
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var ReactElementValidator = require("./ReactElementValidator");
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var ReactEmptyComponent = require("./ReactEmptyComponent");
|
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var ReactInstanceHandles = require("./ReactInstanceHandles");
|
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var ReactInstanceMap = require("./ReactInstanceMap");
|
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var ReactMarkupChecksum = require("./ReactMarkupChecksum");
|
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var ReactPerf = require("./ReactPerf");
|
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var ReactReconciler = require("./ReactReconciler");
|
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var ReactUpdateQueue = require("./ReactUpdateQueue");
|
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|
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var ReactUpdates = require("./ReactUpdates");
|
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|
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var emptyObject = require("./emptyObject");
|
18
|
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var containsNode = require("./containsNode");
|
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|
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var getReactRootElementInContainer = require("./getReactRootElementInContainer");
|
20
|
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var instantiateReactComponent = require("./instantiateReactComponent");
|
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|
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var invariant = require("./invariant");
|
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|
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var setInnerHTML = require("./setInnerHTML");
|
23
|
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var shouldUpdateReactComponent = require("./shouldUpdateReactComponent");
|
24
|
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var warning = require("./warning");
|
25
|
-
var SEPARATOR = ReactInstanceHandles.SEPARATOR;
|
26
|
-
var ATTR_NAME = DOMProperty.ID_ATTRIBUTE_NAME;
|
27
|
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var nodeCache = {};
|
28
|
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var ELEMENT_NODE_TYPE = 1;
|
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|
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var DOC_NODE_TYPE = 9;
|
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|
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var instancesByReactRootID = {};
|
31
|
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var containersByReactRootID = {};
|
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if ("production" !== process.env.NODE_ENV) {
|
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|
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var rootElementsByReactRootID = {};
|
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|
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}
|
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|
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var findComponentRootReusableArray = [];
|
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|
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function firstDifferenceIndex(string1, string2) {
|
37
|
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var minLen = Math.min(string1.length, string2.length);
|
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|
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for (var i = 0; i < minLen; i++) {
|
39
|
-
if (string1.charAt(i) !== string2.charAt(i)) {
|
40
|
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return i;
|
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|
-
}
|
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|
-
}
|
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|
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return string1.length === string2.length ? -1 : minLen;
|
44
|
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}
|
45
|
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function getReactRootID(container) {
|
46
|
-
var rootElement = getReactRootElementInContainer(container);
|
47
|
-
return rootElement && ReactMount.getID(rootElement);
|
48
|
-
}
|
49
|
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function getID(node) {
|
50
|
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var id = internalGetID(node);
|
51
|
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if (id) {
|
52
|
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if (nodeCache.hasOwnProperty(id)) {
|
53
|
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var cached = nodeCache[id];
|
54
|
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if (cached !== node) {
|
55
|
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("production" !== process.env.NODE_ENV ? invariant(!isValid(cached, id), 'ReactMount: Two valid but unequal nodes with the same `%s`: %s', ATTR_NAME, id) : invariant(!isValid(cached, id)));
|
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nodeCache[id] = node;
|
57
|
-
}
|
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|
-
} else {
|
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|
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nodeCache[id] = node;
|
60
|
-
}
|
61
|
-
}
|
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|
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return id;
|
63
|
-
}
|
64
|
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function internalGetID(node) {
|
65
|
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return node && node.getAttribute && node.getAttribute(ATTR_NAME) || '';
|
66
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}
|
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|
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function setID(node, id) {
|
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|
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var oldID = internalGetID(node);
|
69
|
-
if (oldID !== id) {
|
70
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delete nodeCache[oldID];
|
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}
|
72
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node.setAttribute(ATTR_NAME, id);
|
73
|
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nodeCache[id] = node;
|
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|
-
}
|
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|
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function getNode(id) {
|
76
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if (!nodeCache.hasOwnProperty(id) || !isValid(nodeCache[id], id)) {
|
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nodeCache[id] = ReactMount.findReactNodeByID(id);
|
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}
|
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return nodeCache[id];
|
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}
|
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function getNodeFromInstance(instance) {
|
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var id = ReactInstanceMap.get(instance)._rootNodeID;
|
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if (ReactEmptyComponent.isNullComponentID(id)) {
|
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return null;
|
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|
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}
|
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if (!nodeCache.hasOwnProperty(id) || !isValid(nodeCache[id], id)) {
|
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nodeCache[id] = ReactMount.findReactNodeByID(id);
|
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}
|
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return nodeCache[id];
|
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}
|
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function isValid(node, id) {
|
92
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if (node) {
|
93
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("production" !== process.env.NODE_ENV ? invariant(internalGetID(node) === id, 'ReactMount: Unexpected modification of `%s`', ATTR_NAME) : invariant(internalGetID(node) === id));
|
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var container = ReactMount.findReactContainerForID(id);
|
95
|
-
if (container && containsNode(container, node)) {
|
96
|
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return true;
|
97
|
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}
|
98
|
-
}
|
99
|
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return false;
|
100
|
-
}
|
101
|
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function purgeID(id) {
|
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|
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delete nodeCache[id];
|
103
|
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}
|
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|
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var deepestNodeSoFar = null;
|
105
|
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function findDeepestCachedAncestorImpl(ancestorID) {
|
106
|
-
var ancestor = nodeCache[ancestorID];
|
107
|
-
if (ancestor && isValid(ancestor, ancestorID)) {
|
108
|
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deepestNodeSoFar = ancestor;
|
109
|
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} else {
|
110
|
-
return false;
|
111
|
-
}
|
112
|
-
}
|
113
|
-
function findDeepestCachedAncestor(targetID) {
|
114
|
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deepestNodeSoFar = null;
|
115
|
-
ReactInstanceHandles.traverseAncestors(targetID, findDeepestCachedAncestorImpl);
|
116
|
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var foundNode = deepestNodeSoFar;
|
117
|
-
deepestNodeSoFar = null;
|
118
|
-
return foundNode;
|
119
|
-
}
|
120
|
-
function mountComponentIntoNode(componentInstance, rootID, container, transaction, shouldReuseMarkup) {
|
121
|
-
var markup = ReactReconciler.mountComponent(componentInstance, rootID, transaction, emptyObject);
|
122
|
-
componentInstance._isTopLevel = true;
|
123
|
-
ReactMount._mountImageIntoNode(markup, container, shouldReuseMarkup);
|
124
|
-
}
|
125
|
-
function batchedMountComponentIntoNode(componentInstance, rootID, container, shouldReuseMarkup) {
|
126
|
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var transaction = ReactUpdates.ReactReconcileTransaction.getPooled();
|
127
|
-
transaction.perform(mountComponentIntoNode, null, componentInstance, rootID, container, transaction, shouldReuseMarkup);
|
128
|
-
ReactUpdates.ReactReconcileTransaction.release(transaction);
|
129
|
-
}
|
130
|
-
var ReactMount = {
|
131
|
-
_instancesByReactRootID: instancesByReactRootID,
|
132
|
-
scrollMonitor: function(container, renderCallback) {
|
133
|
-
renderCallback();
|
134
|
-
},
|
135
|
-
_updateRootComponent: function(prevComponent, nextElement, container, callback) {
|
136
|
-
if ("production" !== process.env.NODE_ENV) {
|
137
|
-
ReactElementValidator.checkAndWarnForMutatedProps(nextElement);
|
138
|
-
}
|
139
|
-
ReactMount.scrollMonitor(container, function() {
|
140
|
-
ReactUpdateQueue.enqueueElementInternal(prevComponent, nextElement);
|
141
|
-
if (callback) {
|
142
|
-
ReactUpdateQueue.enqueueCallbackInternal(prevComponent, callback);
|
143
|
-
}
|
144
|
-
});
|
145
|
-
if ("production" !== process.env.NODE_ENV) {
|
146
|
-
rootElementsByReactRootID[getReactRootID(container)] = getReactRootElementInContainer(container);
|
147
|
-
}
|
148
|
-
return prevComponent;
|
149
|
-
},
|
150
|
-
_registerComponent: function(nextComponent, container) {
|
151
|
-
("production" !== process.env.NODE_ENV ? invariant(container && ((container.nodeType === ELEMENT_NODE_TYPE || container.nodeType === DOC_NODE_TYPE)), '_registerComponent(...): Target container is not a DOM element.') : invariant(container && ((container.nodeType === ELEMENT_NODE_TYPE || container.nodeType === DOC_NODE_TYPE))));
|
152
|
-
ReactBrowserEventEmitter.ensureScrollValueMonitoring();
|
153
|
-
var reactRootID = ReactMount.registerContainer(container);
|
154
|
-
instancesByReactRootID[reactRootID] = nextComponent;
|
155
|
-
return reactRootID;
|
156
|
-
},
|
157
|
-
_renderNewRootComponent: function(nextElement, container, shouldReuseMarkup) {
|
158
|
-
("production" !== process.env.NODE_ENV ? warning(ReactCurrentOwner.current == null, '_renderNewRootComponent(): Render methods should be a pure function ' + 'of props and state; triggering nested component updates from ' + 'render is not allowed. If necessary, trigger nested updates in ' + 'componentDidUpdate.') : null);
|
159
|
-
var componentInstance = instantiateReactComponent(nextElement, null);
|
160
|
-
var reactRootID = ReactMount._registerComponent(componentInstance, container);
|
161
|
-
ReactUpdates.batchedUpdates(batchedMountComponentIntoNode, componentInstance, reactRootID, container, shouldReuseMarkup);
|
162
|
-
if ("production" !== process.env.NODE_ENV) {
|
163
|
-
rootElementsByReactRootID[reactRootID] = getReactRootElementInContainer(container);
|
164
|
-
}
|
165
|
-
return componentInstance;
|
166
|
-
},
|
167
|
-
render: function(nextElement, container, callback) {
|
168
|
-
("production" !== process.env.NODE_ENV ? invariant(ReactElement.isValidElement(nextElement), 'React.render(): Invalid component element.%s', (typeof nextElement === 'string' ? ' Instead of passing an element string, make sure to instantiate ' + 'it by passing it to React.createElement.' : typeof nextElement === 'function' ? ' Instead of passing a component class, make sure to instantiate ' + 'it by passing it to React.createElement.' : nextElement != null && nextElement.props !== undefined ? ' This may be caused by unintentionally loading two independent ' + 'copies of React.' : '')) : invariant(ReactElement.isValidElement(nextElement)));
|
169
|
-
var prevComponent = instancesByReactRootID[getReactRootID(container)];
|
170
|
-
if (prevComponent) {
|
171
|
-
var prevElement = prevComponent._currentElement;
|
172
|
-
if (shouldUpdateReactComponent(prevElement, nextElement)) {
|
173
|
-
return ReactMount._updateRootComponent(prevComponent, nextElement, container, callback).getPublicInstance();
|
174
|
-
} else {
|
175
|
-
ReactMount.unmountComponentAtNode(container);
|
176
|
-
}
|
177
|
-
}
|
178
|
-
var reactRootElement = getReactRootElementInContainer(container);
|
179
|
-
var containerHasReactMarkup = reactRootElement && ReactMount.isRenderedByReact(reactRootElement);
|
180
|
-
if ("production" !== process.env.NODE_ENV) {
|
181
|
-
if (!containerHasReactMarkup || reactRootElement.nextSibling) {
|
182
|
-
var rootElementSibling = reactRootElement;
|
183
|
-
while (rootElementSibling) {
|
184
|
-
if (ReactMount.isRenderedByReact(rootElementSibling)) {
|
185
|
-
("production" !== process.env.NODE_ENV ? warning(false, 'render(): Target node has markup rendered by React, but there ' + 'are unrelated nodes as well. This is most commonly caused by ' + 'white-space inserted around server-rendered markup.') : null);
|
186
|
-
break;
|
187
|
-
}
|
188
|
-
rootElementSibling = rootElementSibling.nextSibling;
|
189
|
-
}
|
190
|
-
}
|
191
|
-
}
|
192
|
-
var shouldReuseMarkup = containerHasReactMarkup && !prevComponent;
|
193
|
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var component = ReactMount._renderNewRootComponent(nextElement, container, shouldReuseMarkup).getPublicInstance();
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if (callback) {
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callback.call(component);
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}
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return component;
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},
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constructAndRenderComponent: function(constructor, props, container) {
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var element = ReactElement.createElement(constructor, props);
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return ReactMount.render(element, container);
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},
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constructAndRenderComponentByID: function(constructor, props, id) {
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var domNode = document.getElementById(id);
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("production" !== process.env.NODE_ENV ? invariant(domNode, 'Tried to get element with id of "%s" but it is not present on the page.', id) : invariant(domNode));
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return ReactMount.constructAndRenderComponent(constructor, props, domNode);
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},
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registerContainer: function(container) {
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var reactRootID = getReactRootID(container);
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if (reactRootID) {
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reactRootID = ReactInstanceHandles.getReactRootIDFromNodeID(reactRootID);
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}
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if (!reactRootID) {
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reactRootID = ReactInstanceHandles.createReactRootID();
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}
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containersByReactRootID[reactRootID] = container;
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return reactRootID;
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},
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unmountComponentAtNode: function(container) {
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("production" !== process.env.NODE_ENV ? warning(ReactCurrentOwner.current == null, 'unmountComponentAtNode(): Render methods should be a pure function of ' + 'props and state; triggering nested component updates from render is ' + 'not allowed. If necessary, trigger nested updates in ' + 'componentDidUpdate.') : null);
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("production" !== process.env.NODE_ENV ? invariant(container && ((container.nodeType === ELEMENT_NODE_TYPE || container.nodeType === DOC_NODE_TYPE)), 'unmountComponentAtNode(...): Target container is not a DOM element.') : invariant(container && ((container.nodeType === ELEMENT_NODE_TYPE || container.nodeType === DOC_NODE_TYPE))));
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var reactRootID = getReactRootID(container);
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var component = instancesByReactRootID[reactRootID];
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if (!component) {
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return false;
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}
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ReactMount.unmountComponentFromNode(component, container);
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delete instancesByReactRootID[reactRootID];
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delete containersByReactRootID[reactRootID];
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if ("production" !== process.env.NODE_ENV) {
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delete rootElementsByReactRootID[reactRootID];
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}
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return true;
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},
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unmountComponentFromNode: function(instance, container) {
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ReactReconciler.unmountComponent(instance);
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if (container.nodeType === DOC_NODE_TYPE) {
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container = container.documentElement;
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}
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while (container.lastChild) {
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container.removeChild(container.lastChild);
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}
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},
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findReactContainerForID: function(id) {
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var reactRootID = ReactInstanceHandles.getReactRootIDFromNodeID(id);
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var container = containersByReactRootID[reactRootID];
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if ("production" !== process.env.NODE_ENV) {
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var rootElement = rootElementsByReactRootID[reactRootID];
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if (rootElement && rootElement.parentNode !== container) {
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("production" !== process.env.NODE_ENV ? invariant(internalGetID(rootElement) === reactRootID, 'ReactMount: Root element ID differed from reactRootID.') : invariant(internalGetID(rootElement) === reactRootID));
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var containerChild = container.firstChild;
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if (containerChild && reactRootID === internalGetID(containerChild)) {
|
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rootElementsByReactRootID[reactRootID] = containerChild;
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} else {
|
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("production" !== process.env.NODE_ENV ? warning(false, 'ReactMount: Root element has been removed from its original ' + 'container. New container:', rootElement.parentNode) : null);
|
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}
|
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}
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}
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return container;
|
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|
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},
|
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|
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findReactNodeByID: function(id) {
|
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var reactRoot = ReactMount.findReactContainerForID(id);
|
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|
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return ReactMount.findComponentRoot(reactRoot, id);
|
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|
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},
|
265
|
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isRenderedByReact: function(node) {
|
266
|
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if (node.nodeType !== 1) {
|
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|
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return false;
|
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|
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}
|
269
|
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var id = ReactMount.getID(node);
|
270
|
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return id ? id.charAt(0) === SEPARATOR : false;
|
271
|
-
},
|
272
|
-
getFirstReactDOM: function(node) {
|
273
|
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var current = node;
|
274
|
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while (current && current.parentNode !== current) {
|
275
|
-
if (ReactMount.isRenderedByReact(current)) {
|
276
|
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return current;
|
277
|
-
}
|
278
|
-
current = current.parentNode;
|
279
|
-
}
|
280
|
-
return null;
|
281
|
-
},
|
282
|
-
findComponentRoot: function(ancestorNode, targetID) {
|
283
|
-
var firstChildren = findComponentRootReusableArray;
|
284
|
-
var childIndex = 0;
|
285
|
-
var deepestAncestor = findDeepestCachedAncestor(targetID) || ancestorNode;
|
286
|
-
firstChildren[0] = deepestAncestor.firstChild;
|
287
|
-
firstChildren.length = 1;
|
288
|
-
while (childIndex < firstChildren.length) {
|
289
|
-
var child = firstChildren[childIndex++];
|
290
|
-
var targetChild;
|
291
|
-
while (child) {
|
292
|
-
var childID = ReactMount.getID(child);
|
293
|
-
if (childID) {
|
294
|
-
if (targetID === childID) {
|
295
|
-
targetChild = child;
|
296
|
-
} else if (ReactInstanceHandles.isAncestorIDOf(childID, targetID)) {
|
297
|
-
firstChildren.length = childIndex = 0;
|
298
|
-
firstChildren.push(child.firstChild);
|
299
|
-
}
|
300
|
-
} else {
|
301
|
-
firstChildren.push(child.firstChild);
|
302
|
-
}
|
303
|
-
child = child.nextSibling;
|
304
|
-
}
|
305
|
-
if (targetChild) {
|
306
|
-
firstChildren.length = 0;
|
307
|
-
return targetChild;
|
308
|
-
}
|
309
|
-
}
|
310
|
-
firstChildren.length = 0;
|
311
|
-
("production" !== process.env.NODE_ENV ? invariant(false, 'findComponentRoot(..., %s): Unable to find element. This probably ' + 'means the DOM was unexpectedly mutated (e.g., by the browser), ' + 'usually due to forgetting a <tbody> when using tables, nesting tags ' + 'like <form>, <p>, or <a>, or using non-SVG elements in an <svg> ' + 'parent. ' + 'Try inspecting the child nodes of the element with React ID `%s`.', targetID, ReactMount.getID(ancestorNode)) : invariant(false));
|
312
|
-
},
|
313
|
-
_mountImageIntoNode: function(markup, container, shouldReuseMarkup) {
|
314
|
-
("production" !== process.env.NODE_ENV ? invariant(container && ((container.nodeType === ELEMENT_NODE_TYPE || container.nodeType === DOC_NODE_TYPE)), 'mountComponentIntoNode(...): Target container is not valid.') : invariant(container && ((container.nodeType === ELEMENT_NODE_TYPE || container.nodeType === DOC_NODE_TYPE))));
|
315
|
-
if (shouldReuseMarkup) {
|
316
|
-
var rootElement = getReactRootElementInContainer(container);
|
317
|
-
if (ReactMarkupChecksum.canReuseMarkup(markup, rootElement)) {
|
318
|
-
return;
|
319
|
-
} else {
|
320
|
-
var checksum = rootElement.getAttribute(ReactMarkupChecksum.CHECKSUM_ATTR_NAME);
|
321
|
-
rootElement.removeAttribute(ReactMarkupChecksum.CHECKSUM_ATTR_NAME);
|
322
|
-
var rootMarkup = rootElement.outerHTML;
|
323
|
-
rootElement.setAttribute(ReactMarkupChecksum.CHECKSUM_ATTR_NAME, checksum);
|
324
|
-
var diffIndex = firstDifferenceIndex(markup, rootMarkup);
|
325
|
-
var difference = ' (client) ' + markup.substring(diffIndex - 20, diffIndex + 20) + '\n (server) ' + rootMarkup.substring(diffIndex - 20, diffIndex + 20);
|
326
|
-
("production" !== process.env.NODE_ENV ? invariant(container.nodeType !== DOC_NODE_TYPE, 'You\'re trying to render a component to the document using ' + 'server rendering but the checksum was invalid. This usually ' + 'means you rendered a different component type or props on ' + 'the client from the one on the server, or your render() ' + 'methods are impure. React cannot handle this case due to ' + 'cross-browser quirks by rendering at the document root. You ' + 'should look for environment dependent code in your components ' + 'and ensure the props are the same client and server side:\n%s', difference) : invariant(container.nodeType !== DOC_NODE_TYPE));
|
327
|
-
if ("production" !== process.env.NODE_ENV) {
|
328
|
-
("production" !== process.env.NODE_ENV ? warning(false, 'React attempted to reuse markup in a container but the ' + 'checksum was invalid. This generally means that you are ' + 'using server rendering and the markup generated on the ' + 'server was not what the client was expecting. React injected ' + 'new markup to compensate which works but you have lost many ' + 'of the benefits of server rendering. Instead, figure out ' + 'why the markup being generated is different on the client ' + 'or server:\n%s', difference) : null);
|
329
|
-
}
|
330
|
-
}
|
331
|
-
}
|
332
|
-
("production" !== process.env.NODE_ENV ? invariant(container.nodeType !== DOC_NODE_TYPE, 'You\'re trying to render a component to the document but ' + 'you didn\'t use server rendering. We can\'t do this ' + 'without using server rendering due to cross-browser quirks. ' + 'See React.renderToString() for server rendering.') : invariant(container.nodeType !== DOC_NODE_TYPE));
|
333
|
-
setInnerHTML(container, markup);
|
334
|
-
},
|
335
|
-
getReactRootID: getReactRootID,
|
336
|
-
getID: getID,
|
337
|
-
setID: setID,
|
338
|
-
getNode: getNode,
|
339
|
-
getNodeFromInstance: getNodeFromInstance,
|
340
|
-
purgeID: purgeID
|
341
|
-
};
|
342
|
-
ReactPerf.measureMethods(ReactMount, 'ReactMount', {
|
343
|
-
_renderNewRootComponent: '_renderNewRootComponent',
|
344
|
-
_mountImageIntoNode: '_mountImageIntoNode'
|
345
|
-
});
|
346
|
-
module.exports = ReactMount;
|
347
|
-
})(require("process"));
|