sequenceserver 1.0.12 → 1.0.13

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Files changed (5) hide show
  1. checksums.yaml +5 -5
  2. data/lib/sequenceserver.rb +15 -5
  3. data/lib/sequenceserver/version.rb +1 -1
  4. data/package.json +1 -1
  5. metadata +28 -27
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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+ SHA1:
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+ metadata.gz: 27440af8f5d8ce9e70210cf4b8157120e7397cb7
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+ data.tar.gz: 58345841df90a6db706484cb25a4d477f17c1609
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  SHA512:
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- metadata.gz: d6e9d8df0a4cbc246b8769b031d81bbe973cff10d60ec56e60b8b5569cbf19d461d3483ec02b708676b574298a38d4986c1f770bf810f96828ac4403cf6e801b
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- data.tar.gz: 72334eb52319dbfb0506a936f058fcbe2944b07e82efefff931597e3051bf83937b0c4171d0ca4fba2792e1b74b109d949c10392723bc4b245fed347691745bf
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+ metadata.gz: 915f51a622ea38d66de3889dfb81bde84aab556969a7ee081f330c1d9612bf1aa6f21fe8abd64d56de6a860502444919c969b1a63da4bc753b0c2fd670005ed9
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+ data.tar.gz: ea80934ffb512ffac89419ed491bfccbf647d2d27fea42b0ee625333fb849baf0f4dcb0541f42297d58478557c095c8dba15d13e7469208eee9ed9b588cdcd84
data/lib/sequenceserver.rb CHANGED
@@ -77,10 +77,14 @@ module SequenceServer
77
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  puts
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  puts '** Thank you for using SequenceServer :).'
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  puts ' Please cite: '
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- puts ' Priyam A, Woodcroft BJ, Rai V, Munagala A, Moghul I, Ter F,'
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- puts ' Gibbins MA, Moon H, Leonard G, Rumpf W & Wurm Y. 2015.'
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- puts ' Sequenceserver: a modern graphical user interface for'
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- puts ' custom BLAST databases. biorxiv doi: 10.1101/033142.'
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+ puts ' Priyam A, Woodcroft BJ, Rai V, Moghul I, Munagala A, Ter F,'
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+ puts ' Chowdhary H, Pieniak I, Maynard LJ, Gibbins MA, Moon H,'
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+ puts ' Davis-Richardson A, Uludag M, Watson-Haigh N, Challis R,'
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+ puts ' Nakamura H, Favreau E, Gómez EA, Pluskal T, Leonard G,'
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+ puts ' Rumpf W & Wurm Y.'
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+ puts ' Sequenceserver: A modern graphical user interface for'
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+ puts ' custom BLAST databases.'
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+ puts ' Molecular Biology and Evolution (2019)'
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  end
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  # Rack-interface.
@@ -182,7 +186,9 @@ module SequenceServer
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  fail BLAST_NOT_INSTALLED unless command? 'blastdbcmd'
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  version = `blastdbcmd -version`.split[1]
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  fail BLAST_NOT_EXECUTABLE if !$CHILD_STATUS.success? || version.empty?
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- fail BLAST_NOT_COMPATIBLE, version unless version >= MINIMUM_BLAST_VERSION
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+ if (parse_version(version) <=> parse_version(MINIMUM_BLAST_VERSION)) < 0
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+ fail BLAST_NOT_COMPATIBLE, version
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+ end
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  end
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  def server_url
@@ -212,5 +218,9 @@ module SequenceServer
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  def command?(command)
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  system("which #{command} > /dev/null 2>&1")
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  end
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+
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+ def parse_version(version_string)
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+ version_string.split('.').map(&:to_i)
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+ end
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  end
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  end
data/lib/sequenceserver/version.rb CHANGED
@@ -1,4 +1,4 @@
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  # Define version number.
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  module SequenceServer
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- VERSION = '1.0.12'
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+ VERSION = '1.0.13'
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  end
data/package.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "name": "SequenceServer",
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  "description": "BLAST search made easy!",
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- "version": "1.0.12",
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+ "version": "1.0.13",
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  "homepage": "http://www.sequenceserver.com",
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  "repository": "https://github.com/yannickwurm/sequenceserver",
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  "author": {
metadata CHANGED
@@ -1,7 +1,7 @@
1
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  --- !ruby/object:Gem::Specification
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  name: sequenceserver
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  version: !ruby/object:Gem::Version
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- version: 1.0.12
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+ version: 1.0.13
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  platform: ruby
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  authors:
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  - Anurag Priyam
@@ -11,7 +11,7 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2019-08-19 00:00:00.000000000 Z
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+ date: 2020-03-19 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: sinatra
@@ -77,22 +77,22 @@ dependencies:
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  name: slop
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 3.6.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '3.6'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 3.6.0
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 3.6.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '3.6'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 3.6.0
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  - !ruby/object:Gem::Dependency
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  name: rack-test
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  requirement: !ruby/object:Gem::Requirement
@@ -117,22 +117,22 @@ dependencies:
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  name: rspec
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 2.8.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '2.8'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 2.8.0
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 2.8.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '2.8'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 2.8.0
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  - !ruby/object:Gem::Dependency
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  name: rake
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  requirement: !ruby/object:Gem::Requirement
@@ -157,22 +157,22 @@ dependencies:
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  name: rubocop
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 0.31.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '0.31'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 0.31.0
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 0.31.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '0.31'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 0.31.0
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  - !ruby/object:Gem::Dependency
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  name: capybara
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  requirement: !ruby/object:Gem::Requirement
@@ -197,22 +197,22 @@ dependencies:
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  name: capybara-webkit
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 1.3.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '1.3'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 1.3.0
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: 1.3.0
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: '1.3'
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 1.3.0
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  - !ruby/object:Gem::Dependency
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  name: codeclimate-test-reporter
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  requirement: !ruby/object:Gem::Requirement
@@ -683,7 +683,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubygems_version: 3.0.1
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+ rubyforge_project:
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+ rubygems_version: 2.5.2.3
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  signing_key:
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  specification_version: 4
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  summary: BLAST search made easy!