sequenceserver 1.0.12 → 1.0.13
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- checksums.yaml +5 -5
- data/lib/sequenceserver.rb +15 -5
- data/lib/sequenceserver/version.rb +1 -1
- data/package.json +1 -1
- metadata +28 -27
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
|
2
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-
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3
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-
metadata.gz:
|
4
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-
data.tar.gz:
|
2
|
+
SHA1:
|
3
|
+
metadata.gz: 27440af8f5d8ce9e70210cf4b8157120e7397cb7
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4
|
+
data.tar.gz: 58345841df90a6db706484cb25a4d477f17c1609
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
|
6
|
+
metadata.gz: 915f51a622ea38d66de3889dfb81bde84aab556969a7ee081f330c1d9612bf1aa6f21fe8abd64d56de6a860502444919c969b1a63da4bc753b0c2fd670005ed9
|
7
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+
data.tar.gz: ea80934ffb512ffac89419ed491bfccbf647d2d27fea42b0ee625333fb849baf0f4dcb0541f42297d58478557c095c8dba15d13e7469208eee9ed9b588cdcd84
|
data/lib/sequenceserver.rb
CHANGED
@@ -77,10 +77,14 @@ module SequenceServer
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77
77
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puts
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78
78
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puts '** Thank you for using SequenceServer :).'
|
79
79
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puts ' Please cite: '
|
80
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-
puts ' Priyam A, Woodcroft BJ, Rai V,
|
81
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-
puts '
|
82
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-
puts '
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83
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-
puts '
|
80
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+
puts ' Priyam A, Woodcroft BJ, Rai V, Moghul I, Munagala A, Ter F,'
|
81
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+
puts ' Chowdhary H, Pieniak I, Maynard LJ, Gibbins MA, Moon H,'
|
82
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+
puts ' Davis-Richardson A, Uludag M, Watson-Haigh N, Challis R,'
|
83
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+
puts ' Nakamura H, Favreau E, Gómez EA, Pluskal T, Leonard G,'
|
84
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+
puts ' Rumpf W & Wurm Y.'
|
85
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+
puts ' Sequenceserver: A modern graphical user interface for'
|
86
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+
puts ' custom BLAST databases.'
|
87
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+
puts ' Molecular Biology and Evolution (2019)'
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84
88
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end
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85
89
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86
90
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# Rack-interface.
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@@ -182,7 +186,9 @@ module SequenceServer
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182
186
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fail BLAST_NOT_INSTALLED unless command? 'blastdbcmd'
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183
187
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version = `blastdbcmd -version`.split[1]
|
184
188
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fail BLAST_NOT_EXECUTABLE if !$CHILD_STATUS.success? || version.empty?
|
185
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-
|
189
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+
if (parse_version(version) <=> parse_version(MINIMUM_BLAST_VERSION)) < 0
|
190
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+
fail BLAST_NOT_COMPATIBLE, version
|
191
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+
end
|
186
192
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end
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187
193
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|
188
194
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def server_url
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@@ -212,5 +218,9 @@ module SequenceServer
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212
218
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def command?(command)
|
213
219
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system("which #{command} > /dev/null 2>&1")
|
214
220
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end
|
221
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+
|
222
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+
def parse_version(version_string)
|
223
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+
version_string.split('.').map(&:to_i)
|
224
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+
end
|
215
225
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end
|
216
226
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end
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data/package.json
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: sequenceserver
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3
3
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version: !ruby/object:Gem::Version
|
4
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-
version: 1.0.
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4
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+
version: 1.0.13
|
5
5
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platform: ruby
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6
6
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authors:
|
7
7
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- Anurag Priyam
|
@@ -11,7 +11,7 @@ authors:
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11
11
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autorequire:
|
12
12
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bindir: bin
|
13
13
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cert_chain: []
|
14
|
-
date:
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14
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+
date: 2020-03-19 00:00:00.000000000 Z
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15
15
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dependencies:
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16
16
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- !ruby/object:Gem::Dependency
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17
17
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name: sinatra
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@@ -77,22 +77,22 @@ dependencies:
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77
77
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name: slop
|
78
78
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requirement: !ruby/object:Gem::Requirement
|
79
79
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requirements:
|
80
|
-
- - ">="
|
81
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-
- !ruby/object:Gem::Version
|
82
|
-
version: 3.6.0
|
83
80
|
- - "~>"
|
84
81
|
- !ruby/object:Gem::Version
|
85
82
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version: '3.6'
|
83
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+
- - ">="
|
84
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+
- !ruby/object:Gem::Version
|
85
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+
version: 3.6.0
|
86
86
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type: :runtime
|
87
87
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prerelease: false
|
88
88
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version_requirements: !ruby/object:Gem::Requirement
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89
89
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requirements:
|
90
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-
- - ">="
|
91
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-
- !ruby/object:Gem::Version
|
92
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-
version: 3.6.0
|
93
90
|
- - "~>"
|
94
91
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- !ruby/object:Gem::Version
|
95
92
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version: '3.6'
|
93
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+
- - ">="
|
94
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+
- !ruby/object:Gem::Version
|
95
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+
version: 3.6.0
|
96
96
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- !ruby/object:Gem::Dependency
|
97
97
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name: rack-test
|
98
98
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requirement: !ruby/object:Gem::Requirement
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@@ -117,22 +117,22 @@ dependencies:
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117
117
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name: rspec
|
118
118
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requirement: !ruby/object:Gem::Requirement
|
119
119
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requirements:
|
120
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-
- - ">="
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121
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-
- !ruby/object:Gem::Version
|
122
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-
version: 2.8.0
|
123
120
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- - "~>"
|
124
121
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- !ruby/object:Gem::Version
|
125
122
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version: '2.8'
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123
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+
- - ">="
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124
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+
- !ruby/object:Gem::Version
|
125
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+
version: 2.8.0
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126
126
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type: :development
|
127
127
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prerelease: false
|
128
128
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version_requirements: !ruby/object:Gem::Requirement
|
129
129
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requirements:
|
130
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-
- - ">="
|
131
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-
- !ruby/object:Gem::Version
|
132
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-
version: 2.8.0
|
133
130
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- - "~>"
|
134
131
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- !ruby/object:Gem::Version
|
135
132
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version: '2.8'
|
133
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+
- - ">="
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134
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+
- !ruby/object:Gem::Version
|
135
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+
version: 2.8.0
|
136
136
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- !ruby/object:Gem::Dependency
|
137
137
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name: rake
|
138
138
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requirement: !ruby/object:Gem::Requirement
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@@ -157,22 +157,22 @@ dependencies:
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157
157
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name: rubocop
|
158
158
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requirement: !ruby/object:Gem::Requirement
|
159
159
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requirements:
|
160
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-
- - ">="
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161
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-
- !ruby/object:Gem::Version
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162
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-
version: 0.31.0
|
163
160
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- - "~>"
|
164
161
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- !ruby/object:Gem::Version
|
165
162
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version: '0.31'
|
163
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+
- - ">="
|
164
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+
- !ruby/object:Gem::Version
|
165
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+
version: 0.31.0
|
166
166
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type: :development
|
167
167
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prerelease: false
|
168
168
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version_requirements: !ruby/object:Gem::Requirement
|
169
169
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requirements:
|
170
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-
- - ">="
|
171
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-
- !ruby/object:Gem::Version
|
172
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-
version: 0.31.0
|
173
170
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- - "~>"
|
174
171
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- !ruby/object:Gem::Version
|
175
172
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version: '0.31'
|
173
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+
- - ">="
|
174
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+
- !ruby/object:Gem::Version
|
175
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+
version: 0.31.0
|
176
176
|
- !ruby/object:Gem::Dependency
|
177
177
|
name: capybara
|
178
178
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requirement: !ruby/object:Gem::Requirement
|
@@ -197,22 +197,22 @@ dependencies:
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|
197
197
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name: capybara-webkit
|
198
198
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requirement: !ruby/object:Gem::Requirement
|
199
199
|
requirements:
|
200
|
-
- - ">="
|
201
|
-
- !ruby/object:Gem::Version
|
202
|
-
version: 1.3.0
|
203
200
|
- - "~>"
|
204
201
|
- !ruby/object:Gem::Version
|
205
202
|
version: '1.3'
|
203
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+
- - ">="
|
204
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+
- !ruby/object:Gem::Version
|
205
|
+
version: 1.3.0
|
206
206
|
type: :development
|
207
207
|
prerelease: false
|
208
208
|
version_requirements: !ruby/object:Gem::Requirement
|
209
209
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requirements:
|
210
|
-
- - ">="
|
211
|
-
- !ruby/object:Gem::Version
|
212
|
-
version: 1.3.0
|
213
210
|
- - "~>"
|
214
211
|
- !ruby/object:Gem::Version
|
215
212
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version: '1.3'
|
213
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+
- - ">="
|
214
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+
- !ruby/object:Gem::Version
|
215
|
+
version: 1.3.0
|
216
216
|
- !ruby/object:Gem::Dependency
|
217
217
|
name: codeclimate-test-reporter
|
218
218
|
requirement: !ruby/object:Gem::Requirement
|
@@ -683,7 +683,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
683
683
|
- !ruby/object:Gem::Version
|
684
684
|
version: '0'
|
685
685
|
requirements: []
|
686
|
-
|
686
|
+
rubyforge_project:
|
687
|
+
rubygems_version: 2.5.2.3
|
687
688
|
signing_key:
|
688
689
|
specification_version: 4
|
689
690
|
summary: BLAST search made easy!
|