seqtrimnext 2.0.29 → 2.0.30
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/History.txt +5 -0
- data/README.rdoc +7 -1
- data/lib/seqtrimnext.rb +2 -2
- data/lib/seqtrimnext/classes/install_requirements.rb +3 -3
- metadata +1 -1
data/History.txt
CHANGED
data/README.rdoc
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@@ -86,9 +86,15 @@ To get additional help and list available templates and databases:
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*You can use RVM to install ruby:
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Download latest certificates (maybe you don't need them):
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$ curl -O http://curl.haxx.se/ca/cacert.pem
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$ export CURL_CA_BUNDLE=`pwd`/cacert.pem # add this to your .bashrc or
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equivalent
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Install RVM:
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$ bash < <(curl -
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$ bash < <(curl -k https://rvm.beginrescueend.com/install/rvm)
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Setup environment:
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data/lib/seqtrimnext.rb
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@@ -86,18 +86,18 @@ private
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@external_requirements['blastn']= "You need to install Blast+ 2.2.24 or greater and make sure it is available in your path (export PATH=$PATH:path_to_blast).\nYou can download it from ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/"
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@external_requirements['cd-hit-454']= "Download from http://code.google.com/p/cdhit/downloads/list"
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@external_requirements['gnuplot']= "Download from http://www.gnuplot.info/download.html"
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# @external_requirements['gnuplot']= "Download from http://www.gnuplot.info/download.html"
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# @external_requirements['pepe']= ""
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# @ruby_requirements = { 'n2array' => "" ,
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@ruby_requirements['narray'] = ''
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@ruby_requirements['gnuplot'] = ''
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# @ruby_requirements['gnuplot'] = ''
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@ruby_requirements['term-ansicolor'] = ''
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@ruby_requirements['xml-simple'] = ''
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@ruby_requirements['scbi_blast'] = ''
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@ruby_requirements['
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@ruby_requirements['scbi_mapreduce'] = ''
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@ruby_requirements['scbi_fasta'] = ''
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@ruby_requirements['scbi_fastq'] = ''
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@ruby_requirements['scbi_plot'] = ''
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