seqtrimnext 2.0.29 → 2.0.30

data/History.txt

@@ -1,3 +1,8 @@
+=== 2.0.30 2011-06-14
+
+Removed gnuplot as a prerequisite
+
 === 2.0.29 2011-06-06
 
 * Initial public release on rubygems
+

data/README.rdoc

@@ -86,9 +86,15 @@ To get additional help and list available templates and databases:
 
 *You can use RVM to install ruby:
 
+Download latest certificates (maybe you don't need them):
+
+  $ curl -O http://curl.haxx.se/ca/cacert.pem 
+  $ export CURL_CA_BUNDLE=`pwd`/cacert.pem # add this to your .bashrc or 
+equivalent
+
 Install RVM:
 
-  $ bash < <(curl -s https://rvm.beginrescueend.com/install/rvm)
+  $ bash < <(curl -k https://rvm.beginrescueend.com/install/rvm)
 
 Setup environment:  
   

data/lib/seqtrimnext.rb

@@ -30,8 +30,8 @@ module Seqtrimnext
   # SEQTRIM_VERSION_STAGE = 'b'
   # SEQTRIM_VERSION = "2.0.0#{SEQTRIM_VERSION_STAGE}#{SEQTRIM_VERSION_REVISION}"
   
-  VERSION = '2.0.29'
+   VERSION = '2.0.30'
   
   SEQTRIM_VERSION = VERSION
   
-end
+end

data/lib/seqtrimnext/classes/install_requirements.rb

@@ -86,18 +86,18 @@ private
    
     @external_requirements['blastn']= "You need to install Blast+ 2.2.24 or greater and make sure it is available in your path (export PATH=$PATH:path_to_blast).\nYou can download it from ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/"
     @external_requirements['cd-hit-454']= "Download from http://code.google.com/p/cdhit/downloads/list"
-    @external_requirements['gnuplot']= "Download from http://www.gnuplot.info/download.html"
+    # @external_requirements['gnuplot']= "Download from http://www.gnuplot.info/download.html"
     
     # @external_requirements['pepe']= ""
     
                 
     # @ruby_requirements = { 'n2array' => "" ,    
     @ruby_requirements['narray'] = ''
-    @ruby_requirements['gnuplot'] = ''
+    # @ruby_requirements['gnuplot'] = ''
     @ruby_requirements['term-ansicolor'] = ''
     @ruby_requirements['xml-simple'] = ''
     @ruby_requirements['scbi_blast'] = ''
-    @ruby_requirements['scbi_drb'] = ''
+    @ruby_requirements['scbi_mapreduce'] = ''
     @ruby_requirements['scbi_fasta'] = ''
     @ruby_requirements['scbi_fastq'] = ''
     @ruby_requirements['scbi_plot'] = ''

metadata

@@ -2,7 +2,7 @@
 name: seqtrimnext
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 2.0.29
+  version: 2.0.30
 platform: ruby
 authors: 
 - Dario Guerrero & Almudena Bocinos