seqtrimnext 2.0.29 → 2.0.30
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- data/History.txt +5 -0
- data/README.rdoc +7 -1
- data/lib/seqtrimnext.rb +2 -2
- data/lib/seqtrimnext/classes/install_requirements.rb +3 -3
- metadata +1 -1
data/History.txt
CHANGED
data/README.rdoc
CHANGED
@@ -86,9 +86,15 @@ To get additional help and list available templates and databases:
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*You can use RVM to install ruby:
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Download latest certificates (maybe you don't need them):
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$ curl -O http://curl.haxx.se/ca/cacert.pem
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$ export CURL_CA_BUNDLE=`pwd`/cacert.pem # add this to your .bashrc or
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equivalent
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Install RVM:
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$ bash < <(curl -
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$ bash < <(curl -k https://rvm.beginrescueend.com/install/rvm)
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Setup environment:
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data/lib/seqtrimnext.rb
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@@ -86,18 +86,18 @@ private
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@external_requirements['blastn']= "You need to install Blast+ 2.2.24 or greater and make sure it is available in your path (export PATH=$PATH:path_to_blast).\nYou can download it from ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/"
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@external_requirements['cd-hit-454']= "Download from http://code.google.com/p/cdhit/downloads/list"
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@external_requirements['gnuplot']= "Download from http://www.gnuplot.info/download.html"
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# @external_requirements['gnuplot']= "Download from http://www.gnuplot.info/download.html"
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# @external_requirements['pepe']= ""
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# @ruby_requirements = { 'n2array' => "" ,
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@ruby_requirements['narray'] = ''
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@ruby_requirements['gnuplot'] = ''
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# @ruby_requirements['gnuplot'] = ''
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@ruby_requirements['term-ansicolor'] = ''
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@ruby_requirements['xml-simple'] = ''
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@ruby_requirements['scbi_blast'] = ''
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@ruby_requirements['
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@ruby_requirements['scbi_mapreduce'] = ''
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@ruby_requirements['scbi_fasta'] = ''
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@ruby_requirements['scbi_fastq'] = ''
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@ruby_requirements['scbi_plot'] = ''
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