scicom 0.3.0-java → 0.4.0-java
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- checksums.yaml +4 -4
- data/README.md +239 -55
- data/Rakefile +58 -5
- data/config.rb +34 -2
- data/doc/Array.html +153 -0
- data/doc/Java/OrgRenjinSexp/LogicalArrayVector.html +120 -0
- data/doc/Java/OrgRenjinSexp/StringArrayVector.html +133 -0
- data/doc/Java/RbScicom/MDDoubleVector.html +133 -0
- data/doc/MDArray.html +153 -0
- data/doc/MergeObservable.html +347 -0
- data/doc/NegRange.html +166 -0
- data/doc/PackageManager.html +823 -0
- data/doc/PackageManager/ParseXML.html +595 -0
- data/doc/Range.html +243 -0
- data/doc/Renjin.html +2210 -0
- data/doc/Renjin/Attributes.html +401 -0
- data/doc/Renjin/Closure.html +181 -0
- data/doc/Renjin/ComplexVector.html +557 -0
- data/doc/Renjin/DataFrame.html +258 -0
- data/doc/Renjin/Environment.html +279 -0
- data/doc/Renjin/Function.html +243 -0
- data/doc/Renjin/Index.html +628 -0
- data/doc/Renjin/List.html +398 -0
- data/doc/Renjin/Logical.html +352 -0
- data/doc/Renjin/Primitive.html +181 -0
- data/doc/Renjin/RBSexp.html +1151 -0
- data/doc/Renjin/RubySexp.html +498 -0
- data/doc/Renjin/Vector.html +3163 -0
- data/doc/RinRuby.html +2079 -0
- data/doc/_index.html +365 -0
- data/doc/class_list.html +58 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +57 -0
- data/doc/css/style.css +339 -0
- data/doc/file.README.html +159 -0
- data/doc/file_list.html +60 -0
- data/doc/frames.html +26 -0
- data/doc/index.html +159 -0
- data/doc/js/app.js +219 -0
- data/doc/js/full_list.js +181 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +939 -0
- data/doc/top-level-namespace.html +679 -0
- data/lib/JRubyR/attributes.rb +5 -2
- data/lib/JRubyR/callback.rb +115 -0
- data/lib/JRubyR/environment.rb +0 -1
- data/lib/JRubyR/indexed.rb +139 -0
- data/lib/JRubyR/list.rb +0 -16
- data/lib/JRubyR/logical_value.rb +0 -1
- data/lib/JRubyR/rbsexp.rb +20 -131
- data/lib/JRubyR/renjin.rb +201 -71
- data/lib/JRubyR/vector.rb +16 -15
- data/lib/scicom.rb +1 -3
- data/target/helper.jar +0 -0
- data/test/test_R_interface.rb +1 -1
- data/test/test_array.rb +1 -1
- data/test/test_assign_mdarray.rb +1 -1
- data/test/test_assign_mdarray_2d.rb +1 -1
- data/test/test_assign_mdarray_3d.rb +1 -1
- data/test/test_attributes.rb +1 -1
- data/test/test_basic.rb +7 -5
- data/test/test_callback.rb +176 -0
- data/test/test_complete.rb +1 -1
- data/test/test_creation.rb +29 -5
- data/test/test_dataframe.rb +1 -1
- data/test/test_factor.rb +1 -1
- data/test/test_functions.rb +13 -10
- data/test/test_linear_model.rb +1 -1
- data/test/test_list.rb +49 -10
- data/test/test_matrix.rb +6 -6
- data/test/test_operators.rb +1 -1
- data/test/test_package.rb +5 -5
- data/test/test_vector.rb +13 -7
- data/vendor/aether-api-1.0.2.v20150114.jar +0 -0
- data/vendor/aether-connector-basic-1.0.2.v20150114.jar +0 -0
- data/vendor/aether-impl-1.0.2.v20150114.jar +0 -0
- data/vendor/aether-spi-1.0.2.v20150114.jar +0 -0
- data/vendor/aether-transport-file-1.0.2.v20150114.jar +0 -0
- data/vendor/aether-transport-http-1.0.2.v20150114.jar +0 -0
- data/vendor/aether-util-1.0.2.v20150114.jar +0 -0
- data/vendor/aopalliance-1.0.jar +0 -0
- data/vendor/asm-3.3.1.jar +0 -0
- data/vendor/asm-5.0.4.jar +0 -0
- data/vendor/asm-commons-5.0.4.jar +0 -0
- data/vendor/asm-tree-5.0.4.jar +0 -0
- data/vendor/asm-util-5.0.4.jar +0 -0
- data/vendor/blas-0.8.jar +0 -0
- data/vendor/cdi-api-1.0.jar +0 -0
- data/vendor/codemodel-2.6.jar +0 -0
- data/vendor/collections-generic-4.01.jar +0 -0
- data/vendor/commons-codec-1.6.jar +0 -0
- data/vendor/commons-compress-1.4.1.jar +0 -0
- data/vendor/commons-logging-1.1.1.jar +0 -0
- data/vendor/commons-math-2.2.jar +0 -0
- data/vendor/commons-vfs2-2.0.jar +0 -0
- data/vendor/datasets-0.8.1891.jar +0 -0
- data/vendor/f2jutil-0.8.jar +0 -0
- data/vendor/gcc-runtime-0.8.1891.jar +0 -0
- data/vendor/grDevices-0.8.1891.jar +0 -0
- data/vendor/graphics-0.8.1891.jar +0 -0
- data/vendor/guava-17.0.jar +0 -0
- data/vendor/httpclient-4.2.6.jar +0 -0
- data/vendor/httpcore-4.2.5.jar +0 -0
- data/vendor/javax.inject-1.jar +0 -0
- data/vendor/jcl-over-slf4j-1.6.2.jar +0 -0
- data/vendor/joda-time-2.0.jar +0 -0
- data/vendor/jsr250-api-1.0.jar +0 -0
- data/vendor/jtransforms-2.4.jar +0 -0
- data/vendor/jung-api-2.0.1.jar +0 -0
- data/vendor/jung-graph-impl-2.0.1.jar +0 -0
- data/vendor/lapack-0.8.jar +0 -0
- data/vendor/maven-aether-provider-3.1.0.jar +0 -0
- data/vendor/maven-model-3.1.0.jar +0 -0
- data/vendor/maven-model-builder-3.1.0.jar +0 -0
- data/vendor/maven-repository-metadata-3.1.0.jar +0 -0
- data/vendor/maven-scm-api-1.4.jar +0 -0
- data/vendor/maven-scm-provider-svn-commons-1.4.jar +0 -0
- data/vendor/maven-scm-provider-svnexe-1.4.jar +0 -0
- data/vendor/maven-settings-3.1.0.jar +0 -0
- data/vendor/maven-settings-builder-3.1.0.jar +0 -0
- data/vendor/methods-0.8.1891.jar +0 -0
- data/vendor/netlib-java-0.9.3-renjin-patched-2.jar +0 -0
- data/vendor/org.eclipse.sisu.inject-0.0.0.M2a.jar +0 -0
- data/vendor/org.eclipse.sisu.plexus-0.0.0.M2a.jar +0 -0
- data/vendor/plexus-cipher-1.4.jar +0 -0
- data/vendor/plexus-classworlds-2.4.jar +0 -0
- data/vendor/plexus-component-annotations-1.5.5.jar +0 -0
- data/vendor/plexus-interpolation-1.16.jar +0 -0
- data/vendor/plexus-sec-dispatcher-1.3.jar +0 -0
- data/vendor/plexus-utils-1.5.6.jar +0 -0
- data/vendor/plexus-utils-3.0.10.jar +0 -0
- data/vendor/regexp-1.3.jar +0 -0
- data/vendor/renjin-aether-package-loader-0.8.1891.jar +0 -0
- data/vendor/renjin-appl-0.8.1891.jar +0 -0
- data/vendor/renjin-core-0.8.1891.jar +0 -0
- data/vendor/renjin-gnur-runtime-0.8.1891.jar +0 -0
- data/vendor/renjin-script-engine-0.8.1891.jar +0 -0
- data/vendor/sisu-guice-3.1.0-no_aop.jar +0 -0
- data/vendor/slf4j-api-1.6.2.jar +0 -0
- data/vendor/stats-0.8.1891.jar +0 -0
- data/vendor/utils-0.8.1891.jar +0 -0
- data/vendor/xerbla-0.8.jar +0 -0
- data/vendor/xz-1.0.jar +0 -0
- data/version.rb +1 -1
- metadata +229 -127
- data/cran/AppliedPredictiveModeling.jar +0 -0
- data/cran/AppliedPredictiveModeling.xml +0 -25
- data/cran/AssetPricing.jar +0 -0
- data/cran/AssetPricing.xml +0 -25
- data/lib/env.rb +0 -12
- data/lib/rinruby.rb +0 -795
- data/test/env.rb +0 -2
- data/test/test_tmp.rb +0 -67
- data/vendor/Renjin.pdf +0 -0
- data/vendor/renjin-script-engine-0.7.0-RC7-SNAPSHOT-jar-with-dependencies.jar +0 -0
data/doc/RinRuby.html
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Class: RinRuby
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— Documentation by YARD 0.8.7.6
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<span class="title">RinRuby</span>
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<dd><pre class="code"><span class='const'>Class</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='const'>Exception</span><span class='rparen'>)</span></pre></dd>
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<dd><pre class="code"><span class='const'>Class</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='const'>Exception</span><span class='rparen'>)</span></pre></dd>
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<span class="note title readonly">readonly</span>
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<span class="summary_desc"><div class='inline'>
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<p>Returns the value of attribute port_number.</p>
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<a href="#port_width-instance_method" title="#port_width (instance method)">- (Object) <strong>port_width</strong> </a>
|
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|
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</span>
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<span class="note title readonly">readonly</span>
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<span class="summary_desc"><div class='inline'>
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<p>Returns the value of attribute port_width.</p>
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</div></span>
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<li class="public ">
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<span class="summary_signature">
|
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|
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<a href="#readline-instance_method" title="#readline (instance method)">- (Object) <strong>readline</strong> </a>
|
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|
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|
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</span>
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<span class="note title readonly">readonly</span>
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<span class="summary_desc"><div class='inline'>
|
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+
<p>Returns the value of attribute readline.</p>
|
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+
</div></span>
|
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|
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</li>
|
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|
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|
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</ul>
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|
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|
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|
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<h2>
|
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+
Instance Method Summary
|
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<small>(<a href="#" class="summary_toggle">collapse</a>)</small>
|
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|
+
</h2>
|
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|
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<ul class="summary">
|
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|
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<li class="public ">
|
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+
<span class="summary_signature">
|
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+
|
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<a href="#assign-instance_method" title="#assign (instance method)">- (Object) <strong>assign</strong>(name, value) </a>
|
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+
|
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|
+
|
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+
|
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|
+
</span>
|
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|
+
|
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+
|
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+
|
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|
+
|
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|
+
|
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|
+
|
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|
+
|
385
|
+
|
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|
+
|
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|
+
<span class="summary_desc"><div class='inline'>
|
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|
+
<p>Data is copied from Ruby to R using the assign method or a short-hand
|
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|
+
equivalent.</p>
|
390
|
+
</div></span>
|
391
|
+
|
392
|
+
</li>
|
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|
+
|
394
|
+
|
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|
+
<li class="public ">
|
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|
+
<span class="summary_signature">
|
397
|
+
|
398
|
+
<a href="#complete%3F-instance_method" title="#complete? (instance method)">- (Boolean) <strong>complete?</strong>(string) </a>
|
399
|
+
|
400
|
+
|
401
|
+
|
402
|
+
</span>
|
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|
+
|
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|
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|
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|
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|
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|
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+
|
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|
+
|
409
|
+
|
410
|
+
|
411
|
+
|
412
|
+
<span class="summary_desc"><div class='inline'></div></span>
|
413
|
+
|
414
|
+
</li>
|
415
|
+
|
416
|
+
|
417
|
+
<li class="public ">
|
418
|
+
<span class="summary_signature">
|
419
|
+
|
420
|
+
<a href="#echo-instance_method" title="#echo (instance method)">- (Object) <strong>echo</strong>(enable = nil, stderr = nil) </a>
|
421
|
+
|
422
|
+
|
423
|
+
|
424
|
+
</span>
|
425
|
+
|
426
|
+
|
427
|
+
|
428
|
+
|
429
|
+
|
430
|
+
|
431
|
+
|
432
|
+
|
433
|
+
|
434
|
+
<span class="summary_desc"><div class='inline'>
|
435
|
+
<p>The echo method controls whether the eval method displays output from R
|
436
|
+
and, if echo is enabled, whether messages, warnings, and errors from stderr
|
437
|
+
are also displayed.</p>
|
438
|
+
</div></span>
|
439
|
+
|
440
|
+
</li>
|
441
|
+
|
442
|
+
|
443
|
+
<li class="public ">
|
444
|
+
<span class="summary_signature">
|
445
|
+
|
446
|
+
<a href="#eval-instance_method" title="#eval (instance method)">- (Object) <strong>eval</strong>(string, echo_override = nil) </a>
|
447
|
+
|
448
|
+
|
449
|
+
|
450
|
+
</span>
|
451
|
+
|
452
|
+
|
453
|
+
|
454
|
+
|
455
|
+
|
456
|
+
|
457
|
+
|
458
|
+
|
459
|
+
|
460
|
+
<span class="summary_desc"><div class='inline'>
|
461
|
+
<p>The eval instance method passes the R commands contained in the supplied
|
462
|
+
string and displays any resulting plots or prints the output.</p>
|
463
|
+
</div></span>
|
464
|
+
|
465
|
+
</li>
|
466
|
+
|
467
|
+
|
468
|
+
<li class="public ">
|
469
|
+
<span class="summary_signature">
|
470
|
+
|
471
|
+
<a href="#initialize-instance_method" title="#initialize (instance method)">- (RinRuby) <strong>initialize</strong>(*args) </a>
|
472
|
+
|
473
|
+
|
474
|
+
|
475
|
+
</span>
|
476
|
+
|
477
|
+
|
478
|
+
<span class="note title constructor">constructor</span>
|
479
|
+
|
480
|
+
|
481
|
+
|
482
|
+
|
483
|
+
|
484
|
+
|
485
|
+
|
486
|
+
|
487
|
+
<span class="summary_desc"><div class='inline'>
|
488
|
+
<p>A new instance of RinRuby.</p>
|
489
|
+
</div></span>
|
490
|
+
|
491
|
+
</li>
|
492
|
+
|
493
|
+
|
494
|
+
<li class="public ">
|
495
|
+
<span class="summary_signature">
|
496
|
+
|
497
|
+
<a href="#method_missing-instance_method" title="#method_missing (instance method)">- (Object) <strong>method_missing</strong>(symbol, *args) </a>
|
498
|
+
|
499
|
+
|
500
|
+
|
501
|
+
</span>
|
502
|
+
|
503
|
+
|
504
|
+
|
505
|
+
|
506
|
+
|
507
|
+
|
508
|
+
|
509
|
+
|
510
|
+
|
511
|
+
<span class="summary_desc"><div class='inline'>
|
512
|
+
<p>If a method is called which is not defined, then it is assumed that the
|
513
|
+
user is attempting to either pull or assign a variable to R.</p>
|
514
|
+
</div></span>
|
515
|
+
|
516
|
+
</li>
|
517
|
+
|
518
|
+
|
519
|
+
<li class="public ">
|
520
|
+
<span class="summary_signature">
|
521
|
+
|
522
|
+
<a href="#prompt-instance_method" title="#prompt (instance method)">- (Object) <strong>prompt</strong>(regular_prompt = "> ", continue_prompt = "+ ") </a>
|
523
|
+
|
524
|
+
|
525
|
+
|
526
|
+
</span>
|
527
|
+
|
528
|
+
|
529
|
+
|
530
|
+
|
531
|
+
|
532
|
+
|
533
|
+
|
534
|
+
|
535
|
+
|
536
|
+
<span class="summary_desc"><div class='inline'>
|
537
|
+
<p>When sending code to Ruby using an interactive prompt, this method will
|
538
|
+
change the prompt to an R prompt.</p>
|
539
|
+
</div></span>
|
540
|
+
|
541
|
+
</li>
|
542
|
+
|
543
|
+
|
544
|
+
<li class="public ">
|
545
|
+
<span class="summary_signature">
|
546
|
+
|
547
|
+
<a href="#pull-instance_method" title="#pull (instance method)">- (Object) <strong>pull</strong>(string, singletons = false) </a>
|
548
|
+
|
549
|
+
|
550
|
+
|
551
|
+
</span>
|
552
|
+
|
553
|
+
|
554
|
+
|
555
|
+
|
556
|
+
|
557
|
+
|
558
|
+
|
559
|
+
|
560
|
+
|
561
|
+
<span class="summary_desc"><div class='inline'>
|
562
|
+
<p>Data is copied from R to Ruby using the pull method or a short-hand
|
563
|
+
equivalent.</p>
|
564
|
+
</div></span>
|
565
|
+
|
566
|
+
</li>
|
567
|
+
|
568
|
+
|
569
|
+
<li class="public ">
|
570
|
+
<span class="summary_signature">
|
571
|
+
|
572
|
+
<a href="#quit-instance_method" title="#quit (instance method)">- (Object) <strong>quit</strong> </a>
|
573
|
+
|
574
|
+
|
575
|
+
|
576
|
+
</span>
|
577
|
+
|
578
|
+
|
579
|
+
|
580
|
+
|
581
|
+
|
582
|
+
|
583
|
+
|
584
|
+
|
585
|
+
|
586
|
+
<span class="summary_desc"><div class='inline'>
|
587
|
+
<p>The quit method will properly close the bridge between Ruby and R, freeing
|
588
|
+
up system resources.</p>
|
589
|
+
</div></span>
|
590
|
+
|
591
|
+
</li>
|
592
|
+
|
593
|
+
|
594
|
+
</ul>
|
595
|
+
|
596
|
+
|
597
|
+
<div id="constructor_details" class="method_details_list">
|
598
|
+
<h2>Constructor Details</h2>
|
599
|
+
|
600
|
+
<div class="method_details first">
|
601
|
+
<h3 class="signature first" id="initialize-instance_method">
|
602
|
+
|
603
|
+
- (<tt><span class='object_link'><a href="" title="RinRuby (class)">RinRuby</a></span></tt>) <strong>initialize</strong>(*args)
|
604
|
+
|
605
|
+
|
606
|
+
|
607
|
+
|
608
|
+
|
609
|
+
</h3><div class="docstring">
|
610
|
+
<div class="discussion">
|
611
|
+
|
612
|
+
<p>Returns a new instance of RinRuby</p>
|
613
|
+
|
614
|
+
|
615
|
+
</div>
|
616
|
+
</div>
|
617
|
+
<div class="tags">
|
618
|
+
|
619
|
+
|
620
|
+
</div><table class="source_code">
|
621
|
+
<tr>
|
622
|
+
<td>
|
623
|
+
<pre class="lines">
|
624
|
+
|
625
|
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|
626
|
+
108
|
627
|
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109
|
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110
|
629
|
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|
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|
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113
|
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114
|
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|
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115
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
660
|
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|
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|
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|
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|
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|
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|
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169
|
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|
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|
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|
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171
|
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|
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|
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173
|
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|
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176
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182
|
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|
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|
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|
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184
|
703
|
+
185
|
704
|
+
186
|
705
|
+
187</pre>
|
706
|
+
</td>
|
707
|
+
<td>
|
708
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 108</span>
|
709
|
+
|
710
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='op'>*</span><span class='id identifier rubyid_args'>args</span><span class='rparen'>)</span>
|
711
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='op'>=</span><span class='const'>Hash</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span>
|
712
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='op'>==</span><span class='int'>1</span> <span class='kw'>and</span> <span class='id identifier rubyid_args'>args</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id identifier rubyid_is_a?'>is_a?</span> <span class='const'>Hash</span>
|
713
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='op'>=</span><span class='id identifier rubyid_args'>args</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span>
|
714
|
+
<span class='kw'>else</span>
|
715
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='lbracket'>[</span><span class='symbol'>:echo</span><span class='rbracket'>]</span><span class='op'>=</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_shift'>shift</span> <span class='kw'>unless</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='op'>==</span><span class='int'>0</span>
|
716
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='lbracket'>[</span><span class='symbol'>:interactive</span><span class='rbracket'>]</span><span class='op'>=</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_shift'>shift</span> <span class='kw'>unless</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='op'>==</span><span class='int'>0</span>
|
717
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='lbracket'>[</span><span class='symbol'>:executable</span><span class='rbracket'>]</span><span class='op'>=</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_shift'>shift</span> <span class='kw'>unless</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='op'>==</span><span class='int'>0</span>
|
718
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='lbracket'>[</span><span class='symbol'>:port_number</span><span class='rbracket'>]</span><span class='op'>=</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_shift'>shift</span> <span class='kw'>unless</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='op'>==</span><span class='int'>0</span>
|
719
|
+
<span class='id identifier rubyid_opts'>opts</span><span class='lbracket'>[</span><span class='symbol'>:port_width</span><span class='rbracket'>]</span><span class='op'>=</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_shift'>shift</span> <span class='kw'>unless</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='op'>==</span><span class='int'>0</span>
|
720
|
+
<span class='kw'>end</span>
|
721
|
+
<span class='id identifier rubyid_default_opts'>default_opts</span><span class='op'>=</span> <span class='lbrace'>{</span><span class='symbol'>:echo</span><span class='op'>=></span><span class='kw'>true</span><span class='comma'>,</span> <span class='symbol'>:interactive</span><span class='op'>=></span><span class='kw'>true</span><span class='comma'>,</span> <span class='symbol'>:executable</span><span class='op'>=></span><span class='kw'>nil</span><span class='comma'>,</span> <span class='symbol'>:port_number</span><span class='op'>=></span><span class='int'>38442</span><span class='comma'>,</span> <span class='symbol'>:port_width</span><span class='op'>=></span><span class='int'>1000</span><span class='comma'>,</span> <span class='symbol'>:hostname</span><span class='op'>=></span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>127.0.0.1</span><span class='tstring_end'>'</span></span><span class='rbrace'>}</span>
|
722
|
+
|
723
|
+
<span class='ivar'>@opts</span><span class='op'>=</span><span class='id identifier rubyid_default_opts'>default_opts</span><span class='period'>.</span><span class='id identifier rubyid_merge'>merge</span><span class='lparen'>(</span><span class='id identifier rubyid_opts'>opts</span><span class='rparen'>)</span>
|
724
|
+
<span class='ivar'>@port_width</span><span class='op'>=</span><span class='ivar'>@opts</span><span class='lbracket'>[</span><span class='symbol'>:port_width</span><span class='rbracket'>]</span>
|
725
|
+
<span class='ivar'>@executable</span><span class='op'>=</span><span class='ivar'>@opts</span><span class='lbracket'>[</span><span class='symbol'>:executable</span><span class='rbracket'>]</span>
|
726
|
+
<span class='ivar'>@hostname</span><span class='op'>=</span><span class='ivar'>@opts</span><span class='lbracket'>[</span><span class='symbol'>:hostname</span><span class='rbracket'>]</span>
|
727
|
+
<span class='kw'>while</span> <span class='kw'>true</span>
|
728
|
+
<span class='kw'>begin</span>
|
729
|
+
<span class='ivar'>@port_number</span> <span class='op'>=</span> <span class='ivar'>@opts</span><span class='lbracket'>[</span><span class='symbol'>:port_number</span><span class='rbracket'>]</span> <span class='op'>+</span> <span class='id identifier rubyid_rand'>rand</span><span class='lparen'>(</span><span class='id identifier rubyid_port_width'>port_width</span><span class='rparen'>)</span>
|
730
|
+
<span class='ivar'>@server_socket</span> <span class='op'>=</span> <span class='const'>TCPServer</span><span class='op'>::</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='ivar'>@hostname</span><span class='comma'>,</span> <span class='ivar'>@port_number</span><span class='rparen'>)</span>
|
731
|
+
<span class='kw'>break</span>
|
732
|
+
<span class='kw'>rescue</span> <span class='const'>Errno</span><span class='op'>::</span><span class='const'>EADDRINUSE</span>
|
733
|
+
<span class='id identifier rubyid_sleep'>sleep</span> <span class='float'>0.5</span> <span class='kw'>if</span> <span class='id identifier rubyid_port_width'>port_width</span> <span class='op'>==</span> <span class='int'>1</span>
|
734
|
+
<span class='kw'>end</span>
|
735
|
+
<span class='kw'>end</span>
|
736
|
+
<span class='ivar'>@echo_enabled</span> <span class='op'>=</span> <span class='ivar'>@opts</span><span class='lbracket'>[</span><span class='symbol'>:echo</span><span class='rbracket'>]</span>
|
737
|
+
<span class='ivar'>@echo_stderr</span> <span class='op'>=</span> <span class='kw'>false</span>
|
738
|
+
<span class='ivar'>@interactive</span> <span class='op'>=</span> <span class='ivar'>@opts</span><span class='lbracket'>[</span><span class='symbol'>:interactive</span><span class='rbracket'>]</span>
|
739
|
+
<span class='ivar'>@platform</span> <span class='op'>=</span> <span class='kw'>case</span> <span class='const'>RUBY_PLATFORM</span>
|
740
|
+
<span class='kw'>when</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>mswin</span><span class='regexp_end'>/</span></span> <span class='kw'>then</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>windows</span><span class='tstring_end'>'</span></span>
|
741
|
+
<span class='kw'>when</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>mingw</span><span class='regexp_end'>/</span></span> <span class='kw'>then</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>windows</span><span class='tstring_end'>'</span></span>
|
742
|
+
<span class='kw'>when</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>bccwin</span><span class='regexp_end'>/</span></span> <span class='kw'>then</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>windows</span><span class='tstring_end'>'</span></span>
|
743
|
+
<span class='kw'>when</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>cygwin</span><span class='regexp_end'>/</span></span> <span class='kw'>then</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>windows-cygwin</span><span class='tstring_end'>'</span></span>
|
744
|
+
<span class='kw'>when</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>java</span><span class='regexp_end'>/</span></span>
|
745
|
+
<span class='id identifier rubyid_require'>require</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>java</span><span class='tstring_end'>'</span></span> <span class='comment'>#:nodoc:
|
746
|
+
</span> <span class='kw'>if</span> <span class='id identifier rubyid_java'>java</span><span class='period'>.</span><span class='id identifier rubyid_lang'>lang</span><span class='period'>.</span><span class='const'>System</span><span class='period'>.</span><span class='id identifier rubyid_getProperty'>getProperty</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>os.name</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span> <span class='op'>=~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>[Ww]indows</span><span class='regexp_end'>/</span></span>
|
747
|
+
<span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>windows-java</span><span class='tstring_end'>'</span></span>
|
748
|
+
<span class='kw'>else</span>
|
749
|
+
<span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>default-java</span><span class='tstring_end'>'</span></span>
|
750
|
+
<span class='kw'>end</span>
|
751
|
+
<span class='kw'>else</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>default</span><span class='tstring_end'>'</span></span>
|
752
|
+
<span class='kw'>end</span>
|
753
|
+
<span class='kw'>if</span> <span class='ivar'>@executable</span> <span class='op'>==</span> <span class='kw'>nil</span>
|
754
|
+
<span class='ivar'>@executable</span> <span class='op'>=</span> <span class='lparen'>(</span> <span class='ivar'>@platform</span> <span class='op'>=~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>windows</span><span class='regexp_end'>/</span></span> <span class='rparen'>)</span> <span class='op'>?</span> <span class='id identifier rubyid_find_R_on_windows'>find_R_on_windows</span><span class='lparen'>(</span><span class='ivar'>@platform</span> <span class='op'>=~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>cygwin</span><span class='regexp_end'>/</span></span><span class='rparen'>)</span> <span class='op'>:</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>R</span><span class='tstring_end'>'</span></span>
|
755
|
+
<span class='kw'>end</span>
|
756
|
+
<span class='id identifier rubyid_platform_options'>platform_options</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
|
757
|
+
<span class='kw'>if</span> <span class='lparen'>(</span> <span class='ivar'>@interactive</span> <span class='rparen'>)</span>
|
758
|
+
<span class='kw'>begin</span>
|
759
|
+
<span class='id identifier rubyid_require'>require</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>readline</span><span class='tstring_end'>'</span></span>
|
760
|
+
<span class='kw'>rescue</span> <span class='const'>LoadError</span>
|
761
|
+
<span class='kw'>end</span>
|
762
|
+
<span class='ivar'>@readline</span> <span class='op'>=</span> <span class='kw'>defined?</span><span class='lparen'>(</span><span class='const'>Readline</span><span class='rparen'>)</span>
|
763
|
+
<span class='id identifier rubyid_platform_options'>platform_options</span> <span class='op'><<</span> <span class='lparen'>(</span> <span class='lparen'>(</span> <span class='ivar'>@platform</span> <span class='op'>=~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>windows</span><span class='regexp_end'>/</span></span> <span class='rparen'>)</span> <span class='op'>?</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>--ess</span><span class='tstring_end'>'</span></span> <span class='op'>:</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>--interactive</span><span class='tstring_end'>'</span></span> <span class='rparen'>)</span>
|
764
|
+
<span class='kw'>else</span>
|
765
|
+
<span class='ivar'>@readline</span> <span class='op'>=</span> <span class='kw'>false</span>
|
766
|
+
<span class='kw'>end</span>
|
767
|
+
<span class='id identifier rubyid_cmd'>cmd</span> <span class='op'>=</span> <span class='tstring'><span class='tstring_beg'>%Q<</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_executable'>executable</span><span class='rbrace'>}</span><span class='tstring_content'> </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_platform_options'>platform_options</span><span class='period'>.</span><span class='id identifier rubyid_join'>join</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'> </span><span class='tstring_end'>'</span></span><span class='rparen'>)</span><span class='rbrace'>}</span><span class='tstring_content'> --slave</span><span class='tstring_end'>></span></span>
|
768
|
+
<span class='ivar'>@engine</span> <span class='op'>=</span> <span class='const'>IO</span><span class='period'>.</span><span class='id identifier rubyid_popen'>popen</span><span class='lparen'>(</span><span class='id identifier rubyid_cmd'>cmd</span><span class='comma'>,</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>w+</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span>
|
769
|
+
<span class='ivar'>@reader</span> <span class='op'>=</span> <span class='ivar'>@engine</span>
|
770
|
+
<span class='ivar'>@writer</span> <span class='op'>=</span> <span class='ivar'>@engine</span>
|
771
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Engine closed</span><span class='tstring_end'>"</span></span> <span class='kw'>if</span> <span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_closed?'>closed?</span>
|
772
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='heredoc_beg'><<-EOF</span>
|
773
|
+
<span class='tstring_content'> </span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_KeepTrying_Variable</span><span class='rbrace'>}</span><span class='tstring_content'> <- TRUE
|
774
|
+
while ( </span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_KeepTrying_Variable</span><span class='rbrace'>}</span><span class='tstring_content'> ) {
|
775
|
+
</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Socket</span><span class='rbrace'>}</span><span class='tstring_content'> <- try(suppressWarnings(socketConnection("</span><span class='embexpr_beg'>#{</span><span class='ivar'>@hostname</span><span class='rbrace'>}</span><span class='tstring_content'>", </span><span class='embexpr_beg'>#{</span><span class='ivar'>@port_number</span><span class='rbrace'>}</span><span class='tstring_content'>, blocking=TRUE, open="rb")),TRUE)
|
776
|
+
if ( inherits(</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Socket</span><span class='rbrace'>}</span><span class='tstring_content'>,"try-error") ) {
|
777
|
+
Sys.sleep(0.1)
|
778
|
+
} else {
|
779
|
+
</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_KeepTrying_Variable</span><span class='rbrace'>}</span><span class='tstring_content'> <- FALSE
|
780
|
+
}
|
781
|
+
}
|
782
|
+
rm(</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_KeepTrying_Variable</span><span class='rbrace'>}</span><span class='tstring_content'>)
|
783
|
+
</span><span class='heredoc_end'> EOF
|
784
|
+
</span> <span class='id identifier rubyid_r_rinruby_get_value'>r_rinruby_get_value</span>
|
785
|
+
<span class='id identifier rubyid_r_rinruby_pull'>r_rinruby_pull</span>
|
786
|
+
<span class='id identifier rubyid_r_rinruby_parseable'>r_rinruby_parseable</span>
|
787
|
+
<span class='ivar'>@socket</span> <span class='op'>=</span> <span class='ivar'>@server_socket</span><span class='period'>.</span><span class='id identifier rubyid_accept'>accept</span>
|
788
|
+
<span class='id identifier rubyid_echo'>echo</span><span class='lparen'>(</span><span class='kw'>nil</span><span class='comma'>,</span><span class='kw'>true</span><span class='rparen'>)</span> <span class='kw'>if</span> <span class='ivar'>@platform</span> <span class='op'>=~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>.*-java</span><span class='regexp_end'>/</span></span> <span class='comment'># Redirect error messages on the Java platform
|
789
|
+
</span><span class='kw'>end</span></pre>
|
790
|
+
</td>
|
791
|
+
</tr>
|
792
|
+
</table>
|
793
|
+
</div>
|
794
|
+
|
795
|
+
</div>
|
796
|
+
<div id="method_missing_details" class="method_details_list">
|
797
|
+
<h2>Dynamic Method Handling</h2>
|
798
|
+
<p class="notice this">
|
799
|
+
This class handles dynamic methods through the <tt>method_missing</tt> method
|
800
|
+
|
801
|
+
</p>
|
802
|
+
|
803
|
+
<div class="method_details first">
|
804
|
+
<h3 class="signature first" id="method_missing-instance_method">
|
805
|
+
|
806
|
+
- (<tt>Object</tt>) <strong>method_missing</strong>(symbol, *args)
|
807
|
+
|
808
|
+
|
809
|
+
|
810
|
+
|
811
|
+
|
812
|
+
</h3><div class="docstring">
|
813
|
+
<div class="discussion">
|
814
|
+
|
815
|
+
<p>If a method is called which is not defined, then it is assumed that the
|
816
|
+
user is attempting to either pull or assign a variable to R. This allows
|
817
|
+
for the short-hand equivalents to the pull and assign methods. For
|
818
|
+
example:</p>
|
819
|
+
|
820
|
+
<pre class="code ruby"><code class="ruby">>> R.x = 2</code></pre>
|
821
|
+
|
822
|
+
<p>is the same as:</p>
|
823
|
+
|
824
|
+
<pre class="code ruby"><code class="ruby">>> R.assign("x",2)</code></pre>
|
825
|
+
|
826
|
+
<p>Also:</p>
|
827
|
+
|
828
|
+
<pre class="code ruby"><code class="ruby">>> n = R.x</code></pre>
|
829
|
+
|
830
|
+
<p>is the same as:</p>
|
831
|
+
|
832
|
+
<pre class="code ruby"><code class="ruby">>> n = R.pull("x")</code></pre>
|
833
|
+
|
834
|
+
<p>The parameters passed to method_missing are those used for the pull or
|
835
|
+
assign depending on the context.</p>
|
836
|
+
|
837
|
+
|
838
|
+
</div>
|
839
|
+
</div>
|
840
|
+
<div class="tags">
|
841
|
+
|
842
|
+
|
843
|
+
</div><table class="source_code">
|
844
|
+
<tr>
|
845
|
+
<td>
|
846
|
+
<pre class="lines">
|
847
|
+
|
848
|
+
|
849
|
+
356
|
850
|
+
357
|
851
|
+
358
|
852
|
+
359
|
853
|
+
360
|
854
|
+
361
|
855
|
+
362
|
856
|
+
363
|
857
|
+
364
|
858
|
+
365
|
859
|
+
366</pre>
|
860
|
+
</td>
|
861
|
+
<td>
|
862
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 356</span>
|
863
|
+
|
864
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_method_missing'>method_missing</span><span class='lparen'>(</span><span class='id identifier rubyid_symbol'>symbol</span><span class='comma'>,</span> <span class='op'>*</span><span class='id identifier rubyid_args'>args</span><span class='rparen'>)</span>
|
865
|
+
<span class='id identifier rubyid_name'>name</span> <span class='op'>=</span> <span class='id identifier rubyid_symbol'>symbol</span><span class='period'>.</span><span class='id identifier rubyid_id2name'>id2name</span>
|
866
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_name'>name</span> <span class='op'>=~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>(.*)=$</span><span class='regexp_end'>/</span></span>
|
867
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>ArgumentError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>You shouldn't assign nil</span><span class='tstring_end'>"</span></span> <span class='kw'>if</span> <span class='id identifier rubyid_args'>args</span><span class='op'>==</span><span class='lbracket'>[</span><span class='kw'>nil</span><span class='rbracket'>]</span>
|
868
|
+
<span class='kw'>super</span> <span class='kw'>if</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_length'>length</span> <span class='op'>!=</span> <span class='int'>1</span>
|
869
|
+
<span class='id identifier rubyid_assign'>assign</span><span class='lparen'>(</span><span class='backref'>$1</span><span class='comma'>,</span><span class='id identifier rubyid_args'>args</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span><span class='rparen'>)</span>
|
870
|
+
<span class='kw'>else</span>
|
871
|
+
<span class='kw'>super</span> <span class='kw'>if</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_length'>length</span> <span class='op'>!=</span> <span class='int'>0</span>
|
872
|
+
<span class='id identifier rubyid_pull'>pull</span><span class='lparen'>(</span><span class='id identifier rubyid_name'>name</span><span class='rparen'>)</span>
|
873
|
+
<span class='kw'>end</span>
|
874
|
+
<span class='kw'>end</span></pre>
|
875
|
+
</td>
|
876
|
+
</tr>
|
877
|
+
</table>
|
878
|
+
</div>
|
879
|
+
|
880
|
+
</div>
|
881
|
+
|
882
|
+
<div id="instance_attr_details" class="attr_details">
|
883
|
+
<h2>Instance Attribute Details</h2>
|
884
|
+
|
885
|
+
|
886
|
+
<span id=""></span>
|
887
|
+
<div class="method_details first">
|
888
|
+
<h3 class="signature first" id="echo_enabled-instance_method">
|
889
|
+
|
890
|
+
- (<tt>Object</tt>) <strong>echo_enabled</strong> <span class="extras">(readonly)</span>
|
891
|
+
|
892
|
+
|
893
|
+
|
894
|
+
|
895
|
+
|
896
|
+
</h3><div class="docstring">
|
897
|
+
<div class="discussion">
|
898
|
+
|
899
|
+
<p>RinRuby is invoked within a Ruby script (or the interactive "irb" prompt
|
900
|
+
denoted >>) using:</p>
|
901
|
+
|
902
|
+
<pre class="code ruby"><code class="ruby">>> require "rinruby"
|
903
|
+
</code></pre>
|
904
|
+
|
905
|
+
<p>The previous statement reads the definition of the RinRuby class into the
|
906
|
+
current Ruby interpreter and creates an instance of the RinRuby class named
|
907
|
+
R. There is a second method for starting an instance of R which allows the
|
908
|
+
user to use any name for the instance, in this case myr:</p>
|
909
|
+
|
910
|
+
<pre class="code ruby"><code class="ruby">>> require "rinruby"
|
911
|
+
>> myr = RinRuby.new
|
912
|
+
>> myr.eval "rnorm(1)"
|
913
|
+
</code></pre>
|
914
|
+
|
915
|
+
<p>Any number of independent instances of R can be created in this way.</p>
|
916
|
+
|
917
|
+
<p><strong>Parameters that can be passed to the new method using a
|
918
|
+
Hash:</strong></p>
|
919
|
+
<ul><li>
|
920
|
+
<p>:echo: By setting the echo to false, output from R is suppressed, although
|
921
|
+
warnings are still printed. This option can be changed later by using the
|
922
|
+
echo method. The default is true.</p>
|
923
|
+
</li><li>
|
924
|
+
<p>:interactive: When interactive is false, R is run in non-interactive mode,
|
925
|
+
resulting in plots without an explicit device being written to Rplots.pdf.
|
926
|
+
Otherwise (i.e., interactive is true), plots are shown on the screen. The
|
927
|
+
default is true.</p>
|
928
|
+
</li><li>
|
929
|
+
<p>:executable: The path of the R executable (which is "R" in Linux and Mac OS
|
930
|
+
X, or "Rterm.exe" in Windows) can be set with the executable argument. The
|
931
|
+
default is nil which makes RinRuby use the registry keys to find the path
|
932
|
+
(on Windows) or use the path defined by $PATH (on Linux and Mac OS X).</p>
|
933
|
+
</li><li>
|
934
|
+
<p>:port_number: This is the smallest port number on the local host that could
|
935
|
+
be used to pass data between Ruby and R. The actual port number used
|
936
|
+
depends on port_width.</p>
|
937
|
+
</li><li>
|
938
|
+
<p>:port_width: RinRuby will randomly select a uniform number between
|
939
|
+
port_number and port_number + port_width - 1 (inclusive) to pass data
|
940
|
+
between Ruby and R. If the randomly selected port is not available, RinRuby
|
941
|
+
will continue selecting random ports until it finds one that is available.
|
942
|
+
By setting port_width to 1, RinRuby will wait until port_number is
|
943
|
+
available. The default port_width is 1000.</p>
|
944
|
+
</li></ul>
|
945
|
+
|
946
|
+
<p>It may be desirable to change the parameters to the instance of R, but
|
947
|
+
still call it by the name of R. In that case the old instance of R which
|
948
|
+
was created with the 'require "rinruby"' statement should be closed first
|
949
|
+
using the quit method which is explained below. Unless the previous
|
950
|
+
instance is killed, it will continue to use system resources until exiting
|
951
|
+
Ruby. The following shows an example by changing the parameter echo:</p>
|
952
|
+
|
953
|
+
<pre class="code ruby"><code class="ruby">>> require "rinruby"
|
954
|
+
>> R.quit
|
955
|
+
>> R = RinRuby.new(false)
|
956
|
+
</code></pre>
|
957
|
+
|
958
|
+
|
959
|
+
</div>
|
960
|
+
</div>
|
961
|
+
<div class="tags">
|
962
|
+
|
963
|
+
|
964
|
+
</div><table class="source_code">
|
965
|
+
<tr>
|
966
|
+
<td>
|
967
|
+
<pre class="lines">
|
968
|
+
|
969
|
+
|
970
|
+
102
|
971
|
+
103
|
972
|
+
104</pre>
|
973
|
+
</td>
|
974
|
+
<td>
|
975
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 102</span>
|
976
|
+
|
977
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_echo_enabled'>echo_enabled</span>
|
978
|
+
<span class='ivar'>@echo_enabled</span>
|
979
|
+
<span class='kw'>end</span></pre>
|
980
|
+
</td>
|
981
|
+
</tr>
|
982
|
+
</table>
|
983
|
+
</div>
|
984
|
+
|
985
|
+
|
986
|
+
<span id=""></span>
|
987
|
+
<div class="method_details ">
|
988
|
+
<h3 class="signature " id="executable-instance_method">
|
989
|
+
|
990
|
+
- (<tt>Object</tt>) <strong>executable</strong> <span class="extras">(readonly)</span>
|
991
|
+
|
992
|
+
|
993
|
+
|
994
|
+
|
995
|
+
|
996
|
+
</h3><div class="docstring">
|
997
|
+
<div class="discussion">
|
998
|
+
|
999
|
+
<p>Returns the value of attribute executable</p>
|
1000
|
+
|
1001
|
+
|
1002
|
+
</div>
|
1003
|
+
</div>
|
1004
|
+
<div class="tags">
|
1005
|
+
|
1006
|
+
|
1007
|
+
</div><table class="source_code">
|
1008
|
+
<tr>
|
1009
|
+
<td>
|
1010
|
+
<pre class="lines">
|
1011
|
+
|
1012
|
+
|
1013
|
+
103
|
1014
|
+
104
|
1015
|
+
105</pre>
|
1016
|
+
</td>
|
1017
|
+
<td>
|
1018
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 103</span>
|
1019
|
+
|
1020
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_executable'>executable</span>
|
1021
|
+
<span class='ivar'>@executable</span>
|
1022
|
+
<span class='kw'>end</span></pre>
|
1023
|
+
</td>
|
1024
|
+
</tr>
|
1025
|
+
</table>
|
1026
|
+
</div>
|
1027
|
+
|
1028
|
+
|
1029
|
+
<span id=""></span>
|
1030
|
+
<div class="method_details ">
|
1031
|
+
<h3 class="signature " id="hostname-instance_method">
|
1032
|
+
|
1033
|
+
- (<tt>Object</tt>) <strong>hostname</strong> <span class="extras">(readonly)</span>
|
1034
|
+
|
1035
|
+
|
1036
|
+
|
1037
|
+
|
1038
|
+
|
1039
|
+
</h3><div class="docstring">
|
1040
|
+
<div class="discussion">
|
1041
|
+
|
1042
|
+
<p>Returns the value of attribute hostname</p>
|
1043
|
+
|
1044
|
+
|
1045
|
+
</div>
|
1046
|
+
</div>
|
1047
|
+
<div class="tags">
|
1048
|
+
|
1049
|
+
|
1050
|
+
</div><table class="source_code">
|
1051
|
+
<tr>
|
1052
|
+
<td>
|
1053
|
+
<pre class="lines">
|
1054
|
+
|
1055
|
+
|
1056
|
+
106
|
1057
|
+
107
|
1058
|
+
108</pre>
|
1059
|
+
</td>
|
1060
|
+
<td>
|
1061
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 106</span>
|
1062
|
+
|
1063
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_hostname'>hostname</span>
|
1064
|
+
<span class='ivar'>@hostname</span>
|
1065
|
+
<span class='kw'>end</span></pre>
|
1066
|
+
</td>
|
1067
|
+
</tr>
|
1068
|
+
</table>
|
1069
|
+
</div>
|
1070
|
+
|
1071
|
+
|
1072
|
+
<span id=""></span>
|
1073
|
+
<div class="method_details ">
|
1074
|
+
<h3 class="signature " id="interactive-instance_method">
|
1075
|
+
|
1076
|
+
- (<tt>Object</tt>) <strong>interactive</strong> <span class="extras">(readonly)</span>
|
1077
|
+
|
1078
|
+
|
1079
|
+
|
1080
|
+
|
1081
|
+
|
1082
|
+
</h3><div class="docstring">
|
1083
|
+
<div class="discussion">
|
1084
|
+
|
1085
|
+
<p>Returns the value of attribute interactive</p>
|
1086
|
+
|
1087
|
+
|
1088
|
+
</div>
|
1089
|
+
</div>
|
1090
|
+
<div class="tags">
|
1091
|
+
|
1092
|
+
|
1093
|
+
</div><table class="source_code">
|
1094
|
+
<tr>
|
1095
|
+
<td>
|
1096
|
+
<pre class="lines">
|
1097
|
+
|
1098
|
+
|
1099
|
+
69
|
1100
|
+
70
|
1101
|
+
71</pre>
|
1102
|
+
</td>
|
1103
|
+
<td>
|
1104
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 69</span>
|
1105
|
+
|
1106
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_interactive'>interactive</span>
|
1107
|
+
<span class='ivar'>@interactive</span>
|
1108
|
+
<span class='kw'>end</span></pre>
|
1109
|
+
</td>
|
1110
|
+
</tr>
|
1111
|
+
</table>
|
1112
|
+
</div>
|
1113
|
+
|
1114
|
+
|
1115
|
+
<span id=""></span>
|
1116
|
+
<div class="method_details ">
|
1117
|
+
<h3 class="signature " id="port_number-instance_method">
|
1118
|
+
|
1119
|
+
- (<tt>Object</tt>) <strong>port_number</strong> <span class="extras">(readonly)</span>
|
1120
|
+
|
1121
|
+
|
1122
|
+
|
1123
|
+
|
1124
|
+
|
1125
|
+
</h3><div class="docstring">
|
1126
|
+
<div class="discussion">
|
1127
|
+
|
1128
|
+
<p>Returns the value of attribute port_number</p>
|
1129
|
+
|
1130
|
+
|
1131
|
+
</div>
|
1132
|
+
</div>
|
1133
|
+
<div class="tags">
|
1134
|
+
|
1135
|
+
|
1136
|
+
</div><table class="source_code">
|
1137
|
+
<tr>
|
1138
|
+
<td>
|
1139
|
+
<pre class="lines">
|
1140
|
+
|
1141
|
+
|
1142
|
+
104
|
1143
|
+
105
|
1144
|
+
106</pre>
|
1145
|
+
</td>
|
1146
|
+
<td>
|
1147
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 104</span>
|
1148
|
+
|
1149
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_port_number'>port_number</span>
|
1150
|
+
<span class='ivar'>@port_number</span>
|
1151
|
+
<span class='kw'>end</span></pre>
|
1152
|
+
</td>
|
1153
|
+
</tr>
|
1154
|
+
</table>
|
1155
|
+
</div>
|
1156
|
+
|
1157
|
+
|
1158
|
+
<span id=""></span>
|
1159
|
+
<div class="method_details ">
|
1160
|
+
<h3 class="signature " id="port_width-instance_method">
|
1161
|
+
|
1162
|
+
- (<tt>Object</tt>) <strong>port_width</strong> <span class="extras">(readonly)</span>
|
1163
|
+
|
1164
|
+
|
1165
|
+
|
1166
|
+
|
1167
|
+
|
1168
|
+
</h3><div class="docstring">
|
1169
|
+
<div class="discussion">
|
1170
|
+
|
1171
|
+
<p>Returns the value of attribute port_width</p>
|
1172
|
+
|
1173
|
+
|
1174
|
+
</div>
|
1175
|
+
</div>
|
1176
|
+
<div class="tags">
|
1177
|
+
|
1178
|
+
|
1179
|
+
</div><table class="source_code">
|
1180
|
+
<tr>
|
1181
|
+
<td>
|
1182
|
+
<pre class="lines">
|
1183
|
+
|
1184
|
+
|
1185
|
+
105
|
1186
|
+
106
|
1187
|
+
107</pre>
|
1188
|
+
</td>
|
1189
|
+
<td>
|
1190
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 105</span>
|
1191
|
+
|
1192
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_port_width'>port_width</span>
|
1193
|
+
<span class='ivar'>@port_width</span>
|
1194
|
+
<span class='kw'>end</span></pre>
|
1195
|
+
</td>
|
1196
|
+
</tr>
|
1197
|
+
</table>
|
1198
|
+
</div>
|
1199
|
+
|
1200
|
+
|
1201
|
+
<span id=""></span>
|
1202
|
+
<div class="method_details ">
|
1203
|
+
<h3 class="signature " id="readline-instance_method">
|
1204
|
+
|
1205
|
+
- (<tt>Object</tt>) <strong>readline</strong> <span class="extras">(readonly)</span>
|
1206
|
+
|
1207
|
+
|
1208
|
+
|
1209
|
+
|
1210
|
+
|
1211
|
+
</h3><div class="docstring">
|
1212
|
+
<div class="discussion">
|
1213
|
+
|
1214
|
+
<p>Returns the value of attribute readline</p>
|
1215
|
+
|
1216
|
+
|
1217
|
+
</div>
|
1218
|
+
</div>
|
1219
|
+
<div class="tags">
|
1220
|
+
|
1221
|
+
|
1222
|
+
</div><table class="source_code">
|
1223
|
+
<tr>
|
1224
|
+
<td>
|
1225
|
+
<pre class="lines">
|
1226
|
+
|
1227
|
+
|
1228
|
+
70
|
1229
|
+
71
|
1230
|
+
72</pre>
|
1231
|
+
</td>
|
1232
|
+
<td>
|
1233
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 70</span>
|
1234
|
+
|
1235
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_readline'>readline</span>
|
1236
|
+
<span class='ivar'>@readline</span>
|
1237
|
+
<span class='kw'>end</span></pre>
|
1238
|
+
</td>
|
1239
|
+
</tr>
|
1240
|
+
</table>
|
1241
|
+
</div>
|
1242
|
+
|
1243
|
+
</div>
|
1244
|
+
|
1245
|
+
|
1246
|
+
<div id="instance_method_details" class="method_details_list">
|
1247
|
+
<h2>Instance Method Details</h2>
|
1248
|
+
|
1249
|
+
|
1250
|
+
<div class="method_details first">
|
1251
|
+
<h3 class="signature first" id="assign-instance_method">
|
1252
|
+
|
1253
|
+
- (<tt>Object</tt>) <strong>assign</strong>(name, value)
|
1254
|
+
|
1255
|
+
|
1256
|
+
|
1257
|
+
|
1258
|
+
|
1259
|
+
</h3><div class="docstring">
|
1260
|
+
<div class="discussion">
|
1261
|
+
|
1262
|
+
<p>Data is copied from Ruby to R using the assign method or a short-hand
|
1263
|
+
equivalent. For example:</p>
|
1264
|
+
|
1265
|
+
<pre class="code ruby"><code class="ruby">>> names = ["Lisa","Teasha","Aaron","Thomas"]
|
1266
|
+
>> R.assign "people", names
|
1267
|
+
>> R.eval "sort(people)"</code></pre>
|
1268
|
+
|
1269
|
+
<p>produces the following :</p>
|
1270
|
+
|
1271
|
+
<pre class="code ruby"><code class="ruby">[1] "Aaron" "Lisa" "Teasha" "Thomas"</code></pre>
|
1272
|
+
|
1273
|
+
<p>The short-hand equivalent to the assign method is simply:</p>
|
1274
|
+
|
1275
|
+
<pre class="code ruby"><code class="ruby">>> R.people = names</code></pre>
|
1276
|
+
|
1277
|
+
<p>Some care is needed when using the short-hand of the assign method since
|
1278
|
+
the label (i.e., people in this case) must be a valid method name in Ruby.
|
1279
|
+
For example, R.copy.of.names = names will not work, but R.copy_of_names =
|
1280
|
+
names is permissible.</p>
|
1281
|
+
|
1282
|
+
<p>The assign method supports Ruby variables of type Fixnum (i.e., integer),
|
1283
|
+
Bignum (i.e., integer), Float (i.e., double), String, and arrays of one of
|
1284
|
+
those three fundamental types. Note that Fixnum or Bignum values that
|
1285
|
+
exceed the capacity of R’s integers are silently converted to doubles.
|
1286
|
+
Data in other formats must be coerced when copying to R.</p>
|
1287
|
+
|
1288
|
+
<p><strong>Parameters that can be passed to the assign method:</strong></p>
|
1289
|
+
<ul><li>
|
1290
|
+
<p>name: The name of the variable desired in R.</p>
|
1291
|
+
</li><li>
|
1292
|
+
<p>value: The value the R variable should have. The assign method supports
|
1293
|
+
Ruby variables of type Fixnum (i.e., integer), Bignum (i.e., integer),
|
1294
|
+
Float (i.e., double), String, and arrays of one of those three fundamental
|
1295
|
+
types. Note that Fixnum or Bignum values that exceed the capacity of R’s
|
1296
|
+
integers are silently converted to doubles. Data in other formats must be
|
1297
|
+
coerced when copying to R.</p>
|
1298
|
+
</li></ul>
|
1299
|
+
|
1300
|
+
<p>The assign method is an alternative to the simplified method, with some
|
1301
|
+
additional flexibility. When using the simplified method, the parameters of
|
1302
|
+
name and value are automatically used, in other words:</p>
|
1303
|
+
|
1304
|
+
<pre class="code ruby"><code class="ruby">>> R.test = 144</code></pre>
|
1305
|
+
|
1306
|
+
<p>is the same as:</p>
|
1307
|
+
|
1308
|
+
<pre class="code ruby"><code class="ruby">>> R.assign("test",144)</code></pre>
|
1309
|
+
|
1310
|
+
<p>Of course it would be confusing to use the shorthand notation to assign a
|
1311
|
+
variable named eval, echo, or any other already defined function. RinRuby
|
1312
|
+
would assume you were calling the function, rather than trying to assign a
|
1313
|
+
variable.</p>
|
1314
|
+
|
1315
|
+
<p>When assigning an array containing differing types of variables, RinRuby
|
1316
|
+
will follow R’s conversion conventions. An array that contains any Strings
|
1317
|
+
will result in a character vector in R. If the array does not contain any
|
1318
|
+
Strings, but it does contain a Float or a large integer (in absolute
|
1319
|
+
value), then the result will be a numeric vector of Doubles in R. If there
|
1320
|
+
are only integers that are suffciently small (in absolute value), then the
|
1321
|
+
result will be a numeric vector of integers in R.</p>
|
1322
|
+
|
1323
|
+
|
1324
|
+
</div>
|
1325
|
+
</div>
|
1326
|
+
<div class="tags">
|
1327
|
+
|
1328
|
+
<p class="tag_title">Raises:</p>
|
1329
|
+
<ul class="raise">
|
1330
|
+
|
1331
|
+
<li>
|
1332
|
+
|
1333
|
+
|
1334
|
+
<span class='type'>(<tt><span class='object_link'><a href="#EngineClosed-constant" title="RinRuby::EngineClosed (constant)">EngineClosed</a></span></tt>)</span>
|
1335
|
+
|
1336
|
+
|
1337
|
+
|
1338
|
+
</li>
|
1339
|
+
|
1340
|
+
</ul>
|
1341
|
+
|
1342
|
+
</div><table class="source_code">
|
1343
|
+
<tr>
|
1344
|
+
<td>
|
1345
|
+
<pre class="lines">
|
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|
+
|
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|
+
|
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|
+
404
|
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|
+
405
|
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|
+
406
|
1351
|
+
407
|
1352
|
+
408
|
1353
|
+
409
|
1354
|
+
410
|
1355
|
+
411</pre>
|
1356
|
+
</td>
|
1357
|
+
<td>
|
1358
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 404</span>
|
1359
|
+
|
1360
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_assign'>assign</span><span class='lparen'>(</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_value'>value</span><span class='rparen'>)</span>
|
1361
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>EngineClosed</span> <span class='kw'>if</span> <span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_closed?'>closed?</span>
|
1362
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_assignable?'>assignable?</span><span class='lparen'>(</span><span class='id identifier rubyid_name'>name</span><span class='rparen'>)</span>
|
1363
|
+
<span class='id identifier rubyid_assign_engine'>assign_engine</span><span class='lparen'>(</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span><span class='id identifier rubyid_value'>value</span><span class='rparen'>)</span>
|
1364
|
+
<span class='kw'>else</span>
|
1365
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>ParseError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Parse error</span><span class='tstring_end'>"</span></span>
|
1366
|
+
<span class='kw'>end</span>
|
1367
|
+
<span class='kw'>end</span></pre>
|
1368
|
+
</td>
|
1369
|
+
</tr>
|
1370
|
+
</table>
|
1371
|
+
</div>
|
1372
|
+
|
1373
|
+
<div class="method_details ">
|
1374
|
+
<h3 class="signature " id="complete?-instance_method">
|
1375
|
+
|
1376
|
+
- (<tt>Boolean</tt>) <strong>complete?</strong>(string)
|
1377
|
+
|
1378
|
+
|
1379
|
+
|
1380
|
+
|
1381
|
+
|
1382
|
+
</h3><div class="docstring">
|
1383
|
+
<div class="discussion">
|
1384
|
+
|
1385
|
+
|
1386
|
+
</div>
|
1387
|
+
</div>
|
1388
|
+
<div class="tags">
|
1389
|
+
|
1390
|
+
<p class="tag_title">Returns:</p>
|
1391
|
+
<ul class="return">
|
1392
|
+
|
1393
|
+
<li>
|
1394
|
+
|
1395
|
+
|
1396
|
+
<span class='type'>(<tt>Boolean</tt>)</span>
|
1397
|
+
|
1398
|
+
|
1399
|
+
|
1400
|
+
</li>
|
1401
|
+
|
1402
|
+
</ul>
|
1403
|
+
|
1404
|
+
</div><table class="source_code">
|
1405
|
+
<tr>
|
1406
|
+
<td>
|
1407
|
+
<pre class="lines">
|
1408
|
+
|
1409
|
+
|
1410
|
+
727
|
1411
|
+
728
|
1412
|
+
729
|
1413
|
+
730
|
1414
|
+
731
|
1415
|
+
732
|
1416
|
+
733
|
1417
|
+
734
|
1418
|
+
735
|
1419
|
+
736
|
1420
|
+
737
|
1421
|
+
738
|
1422
|
+
739
|
1423
|
+
740
|
1424
|
+
741
|
1425
|
+
742
|
1426
|
+
743
|
1427
|
+
744
|
1428
|
+
745</pre>
|
1429
|
+
</td>
|
1430
|
+
<td>
|
1431
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 727</span>
|
1432
|
+
|
1433
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_complete?'>complete?</span><span class='lparen'>(</span><span class='id identifier rubyid_string'>string</span><span class='rparen'>)</span>
|
1434
|
+
<span class='id identifier rubyid_assign_engine'>assign_engine</span><span class='lparen'>(</span><span class='const'>RinRuby_Parse_String</span><span class='comma'>,</span> <span class='id identifier rubyid_string'>string</span><span class='rparen'>)</span>
|
1435
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>rinruby_parseable(</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Parse_String</span><span class='rbrace'>}</span><span class='tstring_content'>)</span><span class='tstring_end'>"</span></span>
|
1436
|
+
<span class='id identifier rubyid_buffer'>buffer</span><span class='op'>=</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_end'>"</span></span>
|
1437
|
+
<span class='ivar'>@socket</span><span class='period'>.</span><span class='id identifier rubyid_read'>read</span><span class='lparen'>(</span><span class='int'>4</span><span class='comma'>,</span><span class='id identifier rubyid_buffer'>buffer</span><span class='rparen'>)</span>
|
1438
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>rm(</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Parse_String</span><span class='rbrace'>}</span><span class='tstring_content'>)</span><span class='tstring_end'>"</span></span>
|
1439
|
+
<span class='id identifier rubyid_result'>result</span> <span class='op'>=</span> <span class='id identifier rubyid_to_signed_int'>to_signed_int</span><span class='lparen'>(</span><span class='id identifier rubyid_buffer'>buffer</span><span class='period'>.</span><span class='id identifier rubyid_unpack'>unpack</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>N</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id identifier rubyid_to_i'>to_i</span><span class='rparen'>)</span>
|
1440
|
+
<span class='kw'>return</span> <span class='id identifier rubyid_result'>result</span><span class='op'>==</span><span class='op'>-</span><span class='int'>1</span> <span class='op'>?</span> <span class='kw'>false</span> <span class='op'>:</span> <span class='kw'>true</span>
|
1441
|
+
|
1442
|
+
<span class='embdoc_beg'>=begin
|
1443
|
+
</span><span class='embdoc'>
|
1444
|
+
</span><span class='embdoc'> result = pull_engine("unlist(lapply(c('.*','^Error in parse.*','^Error in parse.*unexpected end of input.*'),
|
1445
|
+
</span><span class='embdoc'> grep,try({parse(text=#{RinRuby_Parse_String}); 1}, silent=TRUE)))")
|
1446
|
+
</span><span class='embdoc'>
|
1447
|
+
</span><span class='embdoc'> return true if result.length == 1
|
1448
|
+
</span><span class='embdoc'> return false if result.length == 3
|
1449
|
+
</span><span class='embdoc'> raise ParseError, "Parse error"
|
1450
|
+
</span><span class='embdoc_end'>=end
|
1451
|
+
</span><span class='kw'>end</span></pre>
|
1452
|
+
</td>
|
1453
|
+
</tr>
|
1454
|
+
</table>
|
1455
|
+
</div>
|
1456
|
+
|
1457
|
+
<div class="method_details ">
|
1458
|
+
<h3 class="signature " id="echo-instance_method">
|
1459
|
+
|
1460
|
+
- (<tt>Object</tt>) <strong>echo</strong>(enable = nil, stderr = nil)
|
1461
|
+
|
1462
|
+
|
1463
|
+
|
1464
|
+
|
1465
|
+
|
1466
|
+
</h3><div class="docstring">
|
1467
|
+
<div class="discussion">
|
1468
|
+
|
1469
|
+
<p>The echo method controls whether the eval method displays output from R
|
1470
|
+
and, if echo is enabled, whether messages, warnings, and errors from stderr
|
1471
|
+
are also displayed.</p>
|
1472
|
+
|
1473
|
+
<p><strong>Parameters that can be passed to the eval method</strong></p>
|
1474
|
+
<ul><li>
|
1475
|
+
<p>enable: Setting enable to false will turn all output off until the echo
|
1476
|
+
command is used again with enable equal to true. The default is nil, which
|
1477
|
+
will return the current setting.</p>
|
1478
|
+
</li><li>
|
1479
|
+
<p>stderr: Setting stderr to true will force messages, warnings, and errors
|
1480
|
+
from R to be routed through stdout. Using stderr redirection is typically
|
1481
|
+
not needed for the C implementation of Ruby and is thus not not enabled by
|
1482
|
+
default for this implementation. It is typically necessary for jRuby and
|
1483
|
+
is enabled by default in this case. This redirection works well in
|
1484
|
+
practice but it can lead to interleaving output which may confuse RinRuby.
|
1485
|
+
In such cases, stderr redirection should not be used. Echoing must be
|
1486
|
+
enabled when using stderr redirection.</p>
|
1487
|
+
</li></ul>
|
1488
|
+
|
1489
|
+
|
1490
|
+
</div>
|
1491
|
+
</div>
|
1492
|
+
<div class="tags">
|
1493
|
+
|
1494
|
+
|
1495
|
+
</div><table class="source_code">
|
1496
|
+
<tr>
|
1497
|
+
<td>
|
1498
|
+
<pre class="lines">
|
1499
|
+
|
1500
|
+
|
1501
|
+
487
|
1502
|
+
488
|
1503
|
+
489
|
1504
|
+
490
|
1505
|
+
491
|
1506
|
+
492
|
1507
|
+
493
|
1508
|
+
494
|
1509
|
+
495
|
1510
|
+
496
|
1511
|
+
497
|
1512
|
+
498
|
1513
|
+
499
|
1514
|
+
500
|
1515
|
+
501
|
1516
|
+
502
|
1517
|
+
503
|
1518
|
+
504</pre>
|
1519
|
+
</td>
|
1520
|
+
<td>
|
1521
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 487</span>
|
1522
|
+
|
1523
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_echo'>echo</span><span class='lparen'>(</span><span class='id identifier rubyid_enable'>enable</span><span class='op'>=</span><span class='kw'>nil</span><span class='comma'>,</span><span class='id identifier rubyid_stderr'>stderr</span><span class='op'>=</span><span class='kw'>nil</span><span class='rparen'>)</span>
|
1524
|
+
<span class='kw'>if</span> <span class='lparen'>(</span> <span class='id identifier rubyid_enable'>enable</span> <span class='op'>==</span> <span class='kw'>false</span> <span class='rparen'>)</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_stderr'>stderr</span> <span class='op'>==</span> <span class='kw'>true</span> <span class='rparen'>)</span>
|
1525
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>You can only redirect stderr if you are echoing is enabled.</span><span class='tstring_end'>"</span></span>
|
1526
|
+
<span class='kw'>end</span>
|
1527
|
+
<span class='kw'>if</span> <span class='lparen'>(</span> <span class='id identifier rubyid_enable'>enable</span> <span class='op'>!=</span> <span class='kw'>nil</span> <span class='rparen'>)</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_enable'>enable</span> <span class='op'>!=</span> <span class='ivar'>@echo_enabled</span> <span class='rparen'>)</span>
|
1528
|
+
<span class='id identifier rubyid_echo'>echo</span><span class='lparen'>(</span><span class='kw'>nil</span><span class='comma'>,</span><span class='kw'>false</span><span class='rparen'>)</span> <span class='kw'>if</span> <span class='op'>!</span> <span class='id identifier rubyid_enable'>enable</span>
|
1529
|
+
<span class='ivar'>@echo_enabled</span> <span class='op'>=</span> <span class='op'>!</span> <span class='ivar'>@echo_enabled</span>
|
1530
|
+
<span class='kw'>end</span>
|
1531
|
+
<span class='kw'>if</span> <span class='ivar'>@echo_enabled</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_stderr'>stderr</span> <span class='op'>!=</span> <span class='kw'>nil</span> <span class='rparen'>)</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_stderr'>stderr</span> <span class='op'>!=</span> <span class='ivar'>@echo_stderr</span> <span class='rparen'>)</span>
|
1532
|
+
<span class='ivar'>@echo_stderr</span> <span class='op'>=</span> <span class='op'>!</span> <span class='ivar'>@echo_stderr</span>
|
1533
|
+
<span class='kw'>if</span> <span class='ivar'>@echo_stderr</span>
|
1534
|
+
<span class='id identifier rubyid_eval'>eval</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>sink(stdout(),type='message')</span><span class='tstring_end'>"</span></span>
|
1535
|
+
<span class='kw'>else</span>
|
1536
|
+
<span class='id identifier rubyid_eval'>eval</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>sink(type='message')</span><span class='tstring_end'>"</span></span>
|
1537
|
+
<span class='kw'>end</span>
|
1538
|
+
<span class='kw'>end</span>
|
1539
|
+
<span class='lbracket'>[</span> <span class='ivar'>@echo_enabled</span><span class='comma'>,</span> <span class='ivar'>@echo_stderr</span> <span class='rbracket'>]</span>
|
1540
|
+
<span class='kw'>end</span></pre>
|
1541
|
+
</td>
|
1542
|
+
</tr>
|
1543
|
+
</table>
|
1544
|
+
</div>
|
1545
|
+
|
1546
|
+
<div class="method_details ">
|
1547
|
+
<h3 class="signature " id="eval-instance_method">
|
1548
|
+
|
1549
|
+
- (<tt>Object</tt>) <strong>eval</strong>(string, echo_override = nil)
|
1550
|
+
|
1551
|
+
|
1552
|
+
|
1553
|
+
|
1554
|
+
|
1555
|
+
</h3><div class="docstring">
|
1556
|
+
<div class="discussion">
|
1557
|
+
|
1558
|
+
<p>The eval instance method passes the R commands contained in the supplied
|
1559
|
+
string and displays any resulting plots or prints the output. For example:</p>
|
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|
+
|
1561
|
+
<pre class="code ruby"><code class="ruby">>> sample_size = 10
|
1562
|
+
>> R.eval "x <- rnorm(#{sample_size})"
|
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|
+
>> R.eval "summary(x)"
|
1564
|
+
>> R.eval "sd(x)"</code></pre>
|
1565
|
+
|
1566
|
+
<p>produces the following:</p>
|
1567
|
+
|
1568
|
+
<pre class="code ruby"><code class="ruby"> Min. 1st Qu. Median Mean 3rd Qu. Max.
|
1569
|
+
-1.88900 -0.84930 -0.45220 -0.49290 -0.06069 0.78160
|
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|
+
[1] 0.7327981</code></pre>
|
1571
|
+
|
1572
|
+
<p>This example used a string substitution to make the argument to first eval
|
1573
|
+
method equivalent to x <- rnorm(10). This example used three invocations
|
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|
+
of the eval method, but a single invoke is possible using a here document:</p>
|
1575
|
+
|
1576
|
+
<pre class="code ruby"><code class="ruby">>> R.eval <<EOF
|
1577
|
+
x <- rnorm(#{sample_size})
|
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|
+
summary(x)
|
1579
|
+
sd(x)
|
1580
|
+
EOF</code></pre>
|
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|
+
|
1582
|
+
<p><strong>Parameters that can be passed to the eval method</strong></p>
|
1583
|
+
<ul><li>
|
1584
|
+
<p>string: The string parameter is the code which is to be passed to R, for
|
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|
+
example, string = "hist(gamma(1000,5,3))". The string can also span several
|
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|
+
lines of code by use of a here document, as shown:</p>
|
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|
+
|
1588
|
+
<pre class="code ruby"><code class="ruby"><span class='const'>R</span><span class='period'>.</span><span class='id identifier rubyid_eval'>eval</span> <span class='heredoc_beg'><<EOF</span>
|
1589
|
+
<span class='tstring_content'> x<-rgamma(1000,5,3)
|
1590
|
+
hist(x)
|
1591
|
+
</span><span class='heredoc_end'>EOF</span></code></pre>
|
1592
|
+
</li><li>
|
1593
|
+
<p>echo_override: This argument allows one to set the echo behavior for this
|
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|
+
call only. The default for echo_override is nil, which does not override
|
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|
+
the current echo behavior.</p>
|
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|
+
</li></ul>
|
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|
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|
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</div>
|
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</div>
|
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<div class="tags">
|
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|
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|
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<p class="tag_title">Raises:</p>
|
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<ul class="raise">
|
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|
+
|
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|
+
<li>
|
1607
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|
1608
|
+
|
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|
+
<span class='type'>(<tt><span class='object_link'><a href="#EngineClosed-constant" title="RinRuby::EngineClosed (constant)">EngineClosed</a></span></tt>)</span>
|
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|
+
|
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|
+
|
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|
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</li>
|
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|
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</ul>
|
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|
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|
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</div><table class="source_code">
|
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<tr>
|
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<td>
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<pre class="lines">
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|
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|
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|
+
</td>
|
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|
+
<td>
|
1676
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 242</span>
|
1677
|
+
|
1678
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_eval'>eval</span><span class='lparen'>(</span><span class='id identifier rubyid_string'>string</span><span class='comma'>,</span> <span class='id identifier rubyid_echo_override'>echo_override</span><span class='op'>=</span><span class='kw'>nil</span><span class='rparen'>)</span>
|
1679
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>EngineClosed</span> <span class='kw'>if</span> <span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_closed?'>closed?</span>
|
1680
|
+
<span class='id identifier rubyid_echo_enabled'>echo_enabled</span> <span class='op'>=</span> <span class='lparen'>(</span> <span class='id identifier rubyid_echo_override'>echo_override</span> <span class='op'>!=</span> <span class='kw'>nil</span> <span class='rparen'>)</span> <span class='op'>?</span> <span class='id identifier rubyid_echo_override'>echo_override</span> <span class='op'>:</span> <span class='ivar'>@echo_enabled</span>
|
1681
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_complete?'>complete?</span><span class='lparen'>(</span><span class='id identifier rubyid_string'>string</span><span class='rparen'>)</span>
|
1682
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='id identifier rubyid_string'>string</span>
|
1683
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>warning('</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Stderr_Flag</span><span class='rbrace'>}</span><span class='tstring_content'>',immediate.=TRUE)</span><span class='tstring_end'>"</span></span> <span class='kw'>if</span> <span class='ivar'>@echo_stderr</span>
|
1684
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>print('</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Eval_Flag</span><span class='rbrace'>}</span><span class='tstring_content'>')</span><span class='tstring_end'>"</span></span>
|
1685
|
+
<span class='kw'>else</span>
|
1686
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>ParseError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Parse error on eval:</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_string'>string</span><span class='rbrace'>}</span><span class='tstring_end'>"</span></span>
|
1687
|
+
<span class='kw'>end</span>
|
1688
|
+
<span class='const'>Signal</span><span class='period'>.</span><span class='id identifier rubyid_trap'>trap</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>INT</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span> <span class='kw'>do</span>
|
1689
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_print'>print</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'></span><span class='tstring_end'>'</span></span>
|
1690
|
+
<span class='ivar'>@reader</span><span class='period'>.</span><span class='id identifier rubyid_gets'>gets</span> <span class='kw'>if</span> <span class='ivar'>@platform</span> <span class='op'>!~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>java</span><span class='regexp_end'>/</span></span>
|
1691
|
+
<span class='const'>Signal</span><span class='period'>.</span><span class='id identifier rubyid_trap'>trap</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>INT</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span> <span class='kw'>do</span>
|
1692
|
+
<span class='kw'>end</span>
|
1693
|
+
<span class='kw'>return</span> <span class='kw'>true</span>
|
1694
|
+
<span class='kw'>end</span>
|
1695
|
+
<span class='id identifier rubyid_found_eval_flag'>found_eval_flag</span> <span class='op'>=</span> <span class='kw'>false</span>
|
1696
|
+
<span class='id identifier rubyid_found_stderr_flag'>found_stderr_flag</span> <span class='op'>=</span> <span class='kw'>false</span>
|
1697
|
+
<span class='kw'>while</span> <span class='kw'>true</span>
|
1698
|
+
<span class='id identifier rubyid_echo_eligible'>echo_eligible</span> <span class='op'>=</span> <span class='kw'>true</span>
|
1699
|
+
<span class='kw'>begin</span>
|
1700
|
+
<span class='id identifier rubyid_line'>line</span> <span class='op'>=</span> <span class='ivar'>@reader</span><span class='period'>.</span><span class='id identifier rubyid_gets'>gets</span>
|
1701
|
+
<span class='kw'>rescue</span>
|
1702
|
+
<span class='kw'>return</span> <span class='kw'>false</span>
|
1703
|
+
<span class='kw'>end</span>
|
1704
|
+
<span class='kw'>if</span> <span class='op'>!</span> <span class='id identifier rubyid_line'>line</span>
|
1705
|
+
<span class='kw'>return</span> <span class='kw'>false</span>
|
1706
|
+
<span class='kw'>end</span>
|
1707
|
+
<span class='kw'>while</span> <span class='id identifier rubyid_line'>line</span><span class='period'>.</span><span class='id identifier rubyid_chomp!'>chomp!</span>
|
1708
|
+
<span class='kw'>end</span>
|
1709
|
+
<span class='id identifier rubyid_line'>line</span> <span class='op'>=</span> <span class='id identifier rubyid_line'>line</span><span class='lbracket'>[</span><span class='int'>8</span><span class='op'>..</span><span class='op'>-</span><span class='int'>1</span><span class='rbracket'>]</span> <span class='kw'>if</span> <span class='id identifier rubyid_line'>line</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span> <span class='op'>==</span> <span class='int'>27</span> <span class='comment'># Delete escape sequence
|
1710
|
+
</span> <span class='kw'>if</span> <span class='id identifier rubyid_line'>line</span> <span class='op'>==</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>[1] \"</span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Eval_Flag</span><span class='rbrace'>}</span><span class='tstring_content'>\"</span><span class='tstring_end'>"</span></span>
|
1711
|
+
<span class='id identifier rubyid_found_eval_flag'>found_eval_flag</span> <span class='op'>=</span> <span class='kw'>true</span>
|
1712
|
+
<span class='id identifier rubyid_echo_eligible'>echo_eligible</span> <span class='op'>=</span> <span class='kw'>false</span>
|
1713
|
+
<span class='kw'>end</span>
|
1714
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_line'>line</span> <span class='op'>==</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Warning: </span><span class='embexpr_beg'>#{</span><span class='const'>RinRuby_Stderr_Flag</span><span class='rbrace'>}</span><span class='tstring_end'>"</span></span>
|
1715
|
+
<span class='id identifier rubyid_found_stderr_flag'>found_stderr_flag</span> <span class='op'>=</span> <span class='kw'>true</span>
|
1716
|
+
<span class='id identifier rubyid_echo_eligible'>echo_eligible</span> <span class='op'>=</span> <span class='kw'>false</span>
|
1717
|
+
<span class='kw'>end</span>
|
1718
|
+
<span class='kw'>break</span> <span class='kw'>if</span> <span class='id identifier rubyid_found_eval_flag'>found_eval_flag</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_found_stderr_flag'>found_stderr_flag</span> <span class='op'>==</span> <span class='ivar'>@echo_stderr</span> <span class='rparen'>)</span>
|
1719
|
+
<span class='kw'>return</span> <span class='kw'>false</span> <span class='kw'>if</span> <span class='id identifier rubyid_line'>line</span> <span class='op'>==</span> <span class='const'>RinRuby_Exit_Flag</span>
|
1720
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_echo_enabled'>echo_enabled</span> <span class='op'>&&</span> <span class='id identifier rubyid_echo_eligible'>echo_eligible</span>
|
1721
|
+
<span class='id identifier rubyid_puts'>puts</span> <span class='id identifier rubyid_line'>line</span>
|
1722
|
+
<span class='gvar'>$stdout</span><span class='period'>.</span><span class='id identifier rubyid_flush'>flush</span> <span class='kw'>if</span> <span class='ivar'>@platform</span> <span class='op'>!~</span> <span class='tstring'><span class='regexp_beg'>/</span><span class='tstring_content'>windows</span><span class='regexp_end'>/</span></span>
|
1723
|
+
<span class='kw'>end</span>
|
1724
|
+
<span class='kw'>end</span>
|
1725
|
+
<span class='const'>Signal</span><span class='period'>.</span><span class='id identifier rubyid_trap'>trap</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>INT</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span> <span class='kw'>do</span>
|
1726
|
+
<span class='kw'>end</span>
|
1727
|
+
<span class='kw'>true</span>
|
1728
|
+
<span class='kw'>end</span></pre>
|
1729
|
+
</td>
|
1730
|
+
</tr>
|
1731
|
+
</table>
|
1732
|
+
</div>
|
1733
|
+
|
1734
|
+
<div class="method_details ">
|
1735
|
+
<h3 class="signature " id="prompt-instance_method">
|
1736
|
+
|
1737
|
+
- (<tt>Object</tt>) <strong>prompt</strong>(regular_prompt = "> ", continue_prompt = "+ ")
|
1738
|
+
|
1739
|
+
|
1740
|
+
|
1741
|
+
|
1742
|
+
|
1743
|
+
</h3><div class="docstring">
|
1744
|
+
<div class="discussion">
|
1745
|
+
|
1746
|
+
<p>When sending code to Ruby using an interactive prompt, this method will
|
1747
|
+
change the prompt to an R prompt. From the R prompt commands can be sent to
|
1748
|
+
R exactly as if the R program was actually running. When the user is ready
|
1749
|
+
to return to Ruby, then the command exit() will return the prompt to Ruby.
|
1750
|
+
This is the ideal situation for the explorative programmer who needs to run
|
1751
|
+
several lines of code in R, and see the results after each command. This is
|
1752
|
+
also an easy way to execute loops without the use of a here document. It
|
1753
|
+
should be noted that the prompt command does not work in a script, just
|
1754
|
+
Ruby's interactive irb.</p>
|
1755
|
+
|
1756
|
+
<p><strong>Parameters that can be passed to the prompt method:</strong></p>
|
1757
|
+
<ul><li>
|
1758
|
+
<p>regular_prompt: This defines the string used to denote the R prompt.</p>
|
1759
|
+
</li><li>
|
1760
|
+
<p>continue_prompt: This is the string used to denote R's prompt for an
|
1761
|
+
incomplete statement (such as a multiple for loop).</p>
|
1762
|
+
</li></ul>
|
1763
|
+
|
1764
|
+
|
1765
|
+
</div>
|
1766
|
+
</div>
|
1767
|
+
<div class="tags">
|
1768
|
+
|
1769
|
+
|
1770
|
+
</div><table class="source_code">
|
1771
|
+
<tr>
|
1772
|
+
<td>
|
1773
|
+
<pre class="lines">
|
1774
|
+
|
1775
|
+
|
1776
|
+
302
|
1777
|
+
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|
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|
+
304
|
1779
|
+
305
|
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|
+
306
|
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|
+
307
|
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|
+
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|
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|
+
309
|
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|
+
310
|
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|
+
311
|
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|
+
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|
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|
+
313
|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
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|
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|
+
335
|
1810
|
+
336</pre>
|
1811
|
+
</td>
|
1812
|
+
<td>
|
1813
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 302</span>
|
1814
|
+
|
1815
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_prompt'>prompt</span><span class='lparen'>(</span><span class='id identifier rubyid_regular_prompt'>regular_prompt</span><span class='op'>=</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>> </span><span class='tstring_end'>"</span></span><span class='comma'>,</span> <span class='id identifier rubyid_continue_prompt'>continue_prompt</span><span class='op'>=</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>+ </span><span class='tstring_end'>"</span></span><span class='rparen'>)</span>
|
1816
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>The 'prompt' method only available in 'interactive' mode</span><span class='tstring_end'>"</span></span> <span class='kw'>if</span> <span class='op'>!</span> <span class='ivar'>@interactive</span>
|
1817
|
+
<span class='kw'>return</span> <span class='kw'>false</span> <span class='kw'>if</span> <span class='op'>!</span> <span class='id identifier rubyid_eval'>eval</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>0</span><span class='tstring_end'>"</span></span><span class='comma'>,</span><span class='kw'>false</span><span class='rparen'>)</span>
|
1818
|
+
<span class='id identifier rubyid_prompt'>prompt</span> <span class='op'>=</span> <span class='id identifier rubyid_regular_prompt'>regular_prompt</span>
|
1819
|
+
<span class='kw'>while</span> <span class='kw'>true</span>
|
1820
|
+
<span class='id identifier rubyid_cmds'>cmds</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
|
1821
|
+
<span class='kw'>while</span> <span class='kw'>true</span>
|
1822
|
+
<span class='kw'>if</span> <span class='ivar'>@readline</span> <span class='op'>&&</span> <span class='ivar'>@interactive</span>
|
1823
|
+
<span class='id identifier rubyid_cmd'>cmd</span> <span class='op'>=</span> <span class='const'>Readline</span><span class='period'>.</span><span class='id identifier rubyid_readline'>readline</span><span class='lparen'>(</span><span class='id identifier rubyid_prompt'>prompt</span><span class='comma'>,</span><span class='kw'>true</span><span class='rparen'>)</span>
|
1824
|
+
<span class='kw'>else</span>
|
1825
|
+
<span class='id identifier rubyid_print'>print</span> <span class='id identifier rubyid_prompt'>prompt</span>
|
1826
|
+
<span class='gvar'>$stdout</span><span class='period'>.</span><span class='id identifier rubyid_flush'>flush</span>
|
1827
|
+
<span class='id identifier rubyid_cmd'>cmd</span> <span class='op'>=</span> <span class='id identifier rubyid_gets'>gets</span><span class='period'>.</span><span class='id identifier rubyid_strip'>strip</span>
|
1828
|
+
<span class='kw'>end</span>
|
1829
|
+
<span class='id identifier rubyid_cmds'>cmds</span> <span class='op'><<</span> <span class='id identifier rubyid_cmd'>cmd</span>
|
1830
|
+
<span class='kw'>begin</span>
|
1831
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_complete?'>complete?</span><span class='lparen'>(</span><span class='id identifier rubyid_cmds'>cmds</span><span class='period'>.</span><span class='id identifier rubyid_join'>join</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>\n</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span><span class='rparen'>)</span>
|
1832
|
+
<span class='id identifier rubyid_prompt'>prompt</span> <span class='op'>=</span> <span class='id identifier rubyid_regular_prompt'>regular_prompt</span>
|
1833
|
+
<span class='kw'>break</span>
|
1834
|
+
<span class='kw'>else</span>
|
1835
|
+
<span class='id identifier rubyid_prompt'>prompt</span> <span class='op'>=</span> <span class='id identifier rubyid_continue_prompt'>continue_prompt</span>
|
1836
|
+
<span class='kw'>end</span>
|
1837
|
+
<span class='kw'>rescue</span>
|
1838
|
+
<span class='id identifier rubyid_puts'>puts</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Parse error</span><span class='tstring_end'>"</span></span>
|
1839
|
+
<span class='id identifier rubyid_prompt'>prompt</span> <span class='op'>=</span> <span class='id identifier rubyid_regular_prompt'>regular_prompt</span>
|
1840
|
+
<span class='id identifier rubyid_cmds'>cmds</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
|
1841
|
+
<span class='kw'>break</span>
|
1842
|
+
<span class='kw'>end</span>
|
1843
|
+
<span class='kw'>end</span>
|
1844
|
+
<span class='kw'>next</span> <span class='kw'>if</span> <span class='id identifier rubyid_cmds'>cmds</span><span class='period'>.</span><span class='id identifier rubyid_length'>length</span> <span class='op'>==</span> <span class='int'>0</span>
|
1845
|
+
<span class='kw'>break</span> <span class='kw'>if</span> <span class='id identifier rubyid_cmds'>cmds</span><span class='period'>.</span><span class='id identifier rubyid_length'>length</span> <span class='op'>==</span> <span class='int'>1</span> <span class='op'>&&</span> <span class='id identifier rubyid_cmds'>cmds</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span> <span class='op'>==</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>exit()</span><span class='tstring_end'>"</span></span>
|
1846
|
+
<span class='kw'>break</span> <span class='kw'>if</span> <span class='op'>!</span> <span class='id identifier rubyid_eval'>eval</span><span class='lparen'>(</span><span class='id identifier rubyid_cmds'>cmds</span><span class='period'>.</span><span class='id identifier rubyid_join'>join</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>\n</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span><span class='comma'>,</span><span class='kw'>true</span><span class='rparen'>)</span>
|
1847
|
+
<span class='kw'>end</span>
|
1848
|
+
<span class='kw'>true</span>
|
1849
|
+
<span class='kw'>end</span></pre>
|
1850
|
+
</td>
|
1851
|
+
</tr>
|
1852
|
+
</table>
|
1853
|
+
</div>
|
1854
|
+
|
1855
|
+
<div class="method_details ">
|
1856
|
+
<h3 class="signature " id="pull-instance_method">
|
1857
|
+
|
1858
|
+
- (<tt>Object</tt>) <strong>pull</strong>(string, singletons = false)
|
1859
|
+
|
1860
|
+
|
1861
|
+
|
1862
|
+
|
1863
|
+
|
1864
|
+
</h3><div class="docstring">
|
1865
|
+
<div class="discussion">
|
1866
|
+
|
1867
|
+
<p>Data is copied from R to Ruby using the pull method or a short-hand
|
1868
|
+
equivalent. The R object x defined with an eval method can be copied to
|
1869
|
+
Ruby object copy_of_x as follows:</p>
|
1870
|
+
|
1871
|
+
<pre class="code ruby"><code class="ruby">>> R.eval "x <- rnorm(10)"
|
1872
|
+
>> copy_of_x = R.pull "x"
|
1873
|
+
>> puts copy_of_x</code></pre>
|
1874
|
+
|
1875
|
+
<p>which produces the following :</p>
|
1876
|
+
|
1877
|
+
<pre class="code ruby"><code class="ruby"><span class='op'>-</span><span class='float'>0.376404489256671</span>
|
1878
|
+
<span class='op'>-</span><span class='float'>1.0759798269397</span>
|
1879
|
+
<span class='op'>-</span><span class='float'>0.494240140140996</span>
|
1880
|
+
<span class='float'>0.131171385795721</span>
|
1881
|
+
<span class='op'>-</span><span class='float'>0.878328334369391</span>
|
1882
|
+
<span class='op'>-</span><span class='float'>0.762290423047929</span>
|
1883
|
+
<span class='op'>-</span><span class='float'>0.410227216105828</span>
|
1884
|
+
<span class='float'>0.0445512804225151</span>
|
1885
|
+
<span class='op'>-</span><span class='float'>1.88887454545995</span>
|
1886
|
+
<span class='float'>0.781602719849499</span></code></pre>
|
1887
|
+
|
1888
|
+
<p>RinRuby also supports a convenient short-hand notation when the argument to
|
1889
|
+
pull is simply a previously-defined R object (whose name conforms to Ruby's
|
1890
|
+
requirements for method names). For example:</p>
|
1891
|
+
|
1892
|
+
<pre class="code ruby"><code class="ruby">>> copy_of_x = R.x</code></pre>
|
1893
|
+
|
1894
|
+
<p>The explicit assign method, however, can take an arbitrary R statement. For
|
1895
|
+
example:</p>
|
1896
|
+
|
1897
|
+
<pre class="code ruby"><code class="ruby">>> summary_of_x = R.pull "as.numeric(summary(x))"
|
1898
|
+
>> puts summary_of_x</code></pre>
|
1899
|
+
|
1900
|
+
<p>produces the following:</p>
|
1901
|
+
|
1902
|
+
<pre class="code ruby"><code class="ruby"><span class='op'>-</span><span class='float'>1.889</span>
|
1903
|
+
<span class='op'>-</span><span class='float'>0.8493</span>
|
1904
|
+
<span class='op'>-</span><span class='float'>0.4522</span>
|
1905
|
+
<span class='op'>-</span><span class='float'>0.4929</span>
|
1906
|
+
<span class='op'>-</span><span class='float'>0.06069</span>
|
1907
|
+
<span class='float'>0.7816</span></code></pre>
|
1908
|
+
|
1909
|
+
<p>Notice the use above of the as.numeric function in R. This is necessary
|
1910
|
+
since the pull method only supports R vectors which are numeric (i.e.,
|
1911
|
+
integers or doubles) and character (i.e., strings). Data in other formats
|
1912
|
+
must be coerced when copying to Ruby.</p>
|
1913
|
+
|
1914
|
+
<p><strong>Parameters that can be passed to the pull method:</strong></p>
|
1915
|
+
<ul><li>
|
1916
|
+
<p>string: The name of the variable that should be pulled from R. The pull
|
1917
|
+
method only supports R vectors which are numeric (i.e., integers or
|
1918
|
+
doubles) or character (i.e., strings). The R value of NA is pulled as nil
|
1919
|
+
into Ruby. Data in other formats must be coerced when copying to Ruby.</p>
|
1920
|
+
</li><li>
|
1921
|
+
<p>singletons: R represents a single number as a vector of length one, but in
|
1922
|
+
Ruby it is often more convenient to use a number rather than an array of
|
1923
|
+
length one. Setting singleton=false will cause the pull method to shed the
|
1924
|
+
array, while singletons=true will return the number of string within an
|
1925
|
+
array. The default is false.</p>
|
1926
|
+
</li></ul>
|
1927
|
+
|
1928
|
+
<p>The pull method is an alternative to the simplified form where the
|
1929
|
+
parameters are automatically used. For example:</p>
|
1930
|
+
|
1931
|
+
<pre class="code ruby"><code class="ruby">>> puts R.test</code></pre>
|
1932
|
+
|
1933
|
+
<p>is the same as:</p>
|
1934
|
+
|
1935
|
+
<pre class="code ruby"><code class="ruby">>> puts R.pull("test")</code></pre>
|
1936
|
+
|
1937
|
+
|
1938
|
+
</div>
|
1939
|
+
</div>
|
1940
|
+
<div class="tags">
|
1941
|
+
|
1942
|
+
<p class="tag_title">Raises:</p>
|
1943
|
+
<ul class="raise">
|
1944
|
+
|
1945
|
+
<li>
|
1946
|
+
|
1947
|
+
|
1948
|
+
<span class='type'>(<tt><span class='object_link'><a href="#EngineClosed-constant" title="RinRuby::EngineClosed (constant)">EngineClosed</a></span></tt>)</span>
|
1949
|
+
|
1950
|
+
|
1951
|
+
|
1952
|
+
</li>
|
1953
|
+
|
1954
|
+
</ul>
|
1955
|
+
|
1956
|
+
</div><table class="source_code">
|
1957
|
+
<tr>
|
1958
|
+
<td>
|
1959
|
+
<pre class="lines">
|
1960
|
+
|
1961
|
+
|
1962
|
+
466
|
1963
|
+
467
|
1964
|
+
468
|
1965
|
+
469
|
1966
|
+
470
|
1967
|
+
471
|
1968
|
+
472
|
1969
|
+
473
|
1970
|
+
474
|
1971
|
+
475
|
1972
|
+
476
|
1973
|
+
477</pre>
|
1974
|
+
</td>
|
1975
|
+
<td>
|
1976
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 466</span>
|
1977
|
+
|
1978
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_pull'>pull</span><span class='lparen'>(</span><span class='id identifier rubyid_string'>string</span><span class='comma'>,</span> <span class='id identifier rubyid_singletons'>singletons</span><span class='op'>=</span><span class='kw'>false</span><span class='rparen'>)</span>
|
1979
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>EngineClosed</span> <span class='kw'>if</span> <span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_closed?'>closed?</span>
|
1980
|
+
<span class='kw'>if</span> <span class='id identifier rubyid_complete?'>complete?</span><span class='lparen'>(</span><span class='id identifier rubyid_string'>string</span><span class='rparen'>)</span>
|
1981
|
+
<span class='id identifier rubyid_result'>result</span> <span class='op'>=</span> <span class='id identifier rubyid_pull_engine'>pull_engine</span><span class='lparen'>(</span><span class='id identifier rubyid_string'>string</span><span class='rparen'>)</span>
|
1982
|
+
<span class='kw'>if</span> <span class='lparen'>(</span> <span class='op'>!</span> <span class='id identifier rubyid_singletons'>singletons</span> <span class='rparen'>)</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_result'>result</span><span class='period'>.</span><span class='id identifier rubyid_length'>length</span> <span class='op'>==</span> <span class='int'>1</span> <span class='rparen'>)</span> <span class='op'>&&</span> <span class='lparen'>(</span> <span class='id identifier rubyid_result'>result</span><span class='period'>.</span><span class='id identifier rubyid_class'>class</span> <span class='op'>!=</span> <span class='const'>String</span> <span class='rparen'>)</span>
|
1983
|
+
<span class='id identifier rubyid_result'>result</span> <span class='op'>=</span> <span class='id identifier rubyid_result'>result</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span>
|
1984
|
+
<span class='kw'>end</span>
|
1985
|
+
<span class='id identifier rubyid_result'>result</span>
|
1986
|
+
<span class='kw'>else</span>
|
1987
|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>ParseError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Parse error</span><span class='tstring_end'>"</span></span>
|
1988
|
+
<span class='kw'>end</span>
|
1989
|
+
<span class='kw'>end</span></pre>
|
1990
|
+
</td>
|
1991
|
+
</tr>
|
1992
|
+
</table>
|
1993
|
+
</div>
|
1994
|
+
|
1995
|
+
<div class="method_details ">
|
1996
|
+
<h3 class="signature " id="quit-instance_method">
|
1997
|
+
|
1998
|
+
- (<tt>Object</tt>) <strong>quit</strong>
|
1999
|
+
|
2000
|
+
|
2001
|
+
|
2002
|
+
|
2003
|
+
|
2004
|
+
</h3><div class="docstring">
|
2005
|
+
<div class="discussion">
|
2006
|
+
|
2007
|
+
<p>The quit method will properly close the bridge between Ruby and R, freeing
|
2008
|
+
up system resources. This method does not need to be run when a Ruby script
|
2009
|
+
ends.</p>
|
2010
|
+
|
2011
|
+
|
2012
|
+
</div>
|
2013
|
+
</div>
|
2014
|
+
<div class="tags">
|
2015
|
+
|
2016
|
+
|
2017
|
+
</div><table class="source_code">
|
2018
|
+
<tr>
|
2019
|
+
<td>
|
2020
|
+
<pre class="lines">
|
2021
|
+
|
2022
|
+
|
2023
|
+
191
|
2024
|
+
192
|
2025
|
+
193
|
2026
|
+
194
|
2027
|
+
195
|
2028
|
+
196
|
2029
|
+
197
|
2030
|
+
198
|
2031
|
+
199
|
2032
|
+
200
|
2033
|
+
201
|
2034
|
+
202
|
2035
|
+
203
|
2036
|
+
204
|
2037
|
+
205
|
2038
|
+
206
|
2039
|
+
207
|
2040
|
+
208</pre>
|
2041
|
+
</td>
|
2042
|
+
<td>
|
2043
|
+
<pre class="code"><span class="info file"># File 'lib/rinruby.rb', line 191</span>
|
2044
|
+
|
2045
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_quit'>quit</span>
|
2046
|
+
<span class='kw'>begin</span>
|
2047
|
+
<span class='ivar'>@writer</span><span class='period'>.</span><span class='id identifier rubyid_puts'>puts</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>q(save='no')</span><span class='tstring_end'>"</span></span>
|
2048
|
+
<span class='comment'># TODO: Verify if read is needed
|
2049
|
+
</span> <span class='ivar'>@socket</span><span class='period'>.</span><span class='id identifier rubyid_read'>read</span><span class='lparen'>(</span><span class='rparen'>)</span>
|
2050
|
+
<span class='comment'>#@socket.close
|
2051
|
+
</span> <span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_close'>close</span>
|
2052
|
+
|
2053
|
+
|
2054
|
+
<span class='ivar'>@server_socket</span><span class='period'>.</span><span class='id identifier rubyid_close'>close</span>
|
2055
|
+
<span class='comment'>#@reader.close
|
2056
|
+
</span> <span class='comment'>#@writer.close
|
2057
|
+
</span> <span class='kw'>true</span>
|
2058
|
+
<span class='kw'>ensure</span>
|
2059
|
+
<span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_close'>close</span> <span class='kw'>unless</span> <span class='ivar'>@engine</span><span class='period'>.</span><span class='id identifier rubyid_closed?'>closed?</span>
|
2060
|
+
<span class='ivar'>@server_socket</span><span class='period'>.</span><span class='id identifier rubyid_close'>close</span> <span class='kw'>unless</span> <span class='ivar'>@server_socket</span><span class='period'>.</span><span class='id identifier rubyid_closed?'>closed?</span>
|
2061
|
+
<span class='kw'>end</span>
|
2062
|
+
<span class='kw'>end</span></pre>
|
2063
|
+
</td>
|
2064
|
+
</tr>
|
2065
|
+
</table>
|
2066
|
+
</div>
|
2067
|
+
|
2068
|
+
</div>
|
2069
|
+
|
2070
|
+
</div>
|
2071
|
+
|
2072
|
+
<div id="footer">
|
2073
|
+
Generated on Tue Jul 14 18:12:22 2015 by
|
2074
|
+
<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
|
2075
|
+
0.8.7.6 (ruby-1.9.3).
|
2076
|
+
</div>
|
2077
|
+
|
2078
|
+
</body>
|
2079
|
+
</html>
|