ruby-spark 1.0.0
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- checksums.yaml +7 -0
- data/.gitignore +37 -0
- data/Gemfile +47 -0
- data/Guardfile +5 -0
- data/LICENSE.txt +22 -0
- data/README.md +185 -0
- data/Rakefile +35 -0
- data/TODO.md +7 -0
- data/benchmark/aggregate.rb +33 -0
- data/benchmark/bisect.rb +88 -0
- data/benchmark/custom_marshal.rb +94 -0
- data/benchmark/digest.rb +150 -0
- data/benchmark/enumerator.rb +88 -0
- data/benchmark/performance/prepare.sh +18 -0
- data/benchmark/performance/python.py +156 -0
- data/benchmark/performance/r.r +69 -0
- data/benchmark/performance/ruby.rb +167 -0
- data/benchmark/performance/run-all.sh +160 -0
- data/benchmark/performance/scala.scala +181 -0
- data/benchmark/serializer.rb +82 -0
- data/benchmark/sort.rb +43 -0
- data/benchmark/sort2.rb +164 -0
- data/benchmark/take.rb +28 -0
- data/bin/ruby-spark +8 -0
- data/example/pi.rb +28 -0
- data/ext/ruby_c/extconf.rb +3 -0
- data/ext/ruby_c/murmur.c +158 -0
- data/ext/ruby_c/murmur.h +9 -0
- data/ext/ruby_c/ruby-spark.c +18 -0
- data/ext/ruby_java/Digest.java +36 -0
- data/ext/ruby_java/Murmur2.java +98 -0
- data/ext/ruby_java/RubySparkExtService.java +28 -0
- data/ext/ruby_java/extconf.rb +3 -0
- data/ext/spark/build.sbt +73 -0
- data/ext/spark/project/plugins.sbt +9 -0
- data/ext/spark/sbt/sbt +34 -0
- data/ext/spark/src/main/scala/Exec.scala +91 -0
- data/ext/spark/src/main/scala/MLLibAPI.scala +4 -0
- data/ext/spark/src/main/scala/Marshal.scala +52 -0
- data/ext/spark/src/main/scala/MarshalDump.scala +113 -0
- data/ext/spark/src/main/scala/MarshalLoad.scala +220 -0
- data/ext/spark/src/main/scala/RubyAccumulatorParam.scala +69 -0
- data/ext/spark/src/main/scala/RubyBroadcast.scala +13 -0
- data/ext/spark/src/main/scala/RubyConstant.scala +13 -0
- data/ext/spark/src/main/scala/RubyMLLibAPI.scala +55 -0
- data/ext/spark/src/main/scala/RubyMLLibUtilAPI.scala +21 -0
- data/ext/spark/src/main/scala/RubyPage.scala +34 -0
- data/ext/spark/src/main/scala/RubyRDD.scala +364 -0
- data/ext/spark/src/main/scala/RubySerializer.scala +14 -0
- data/ext/spark/src/main/scala/RubyTab.scala +11 -0
- data/ext/spark/src/main/scala/RubyUtils.scala +15 -0
- data/ext/spark/src/main/scala/RubyWorker.scala +257 -0
- data/ext/spark/src/test/scala/MarshalSpec.scala +84 -0
- data/lib/ruby-spark.rb +1 -0
- data/lib/spark.rb +198 -0
- data/lib/spark/accumulator.rb +260 -0
- data/lib/spark/broadcast.rb +98 -0
- data/lib/spark/build.rb +43 -0
- data/lib/spark/cli.rb +169 -0
- data/lib/spark/command.rb +86 -0
- data/lib/spark/command/base.rb +154 -0
- data/lib/spark/command/basic.rb +345 -0
- data/lib/spark/command/pair.rb +124 -0
- data/lib/spark/command/sort.rb +51 -0
- data/lib/spark/command/statistic.rb +144 -0
- data/lib/spark/command_builder.rb +141 -0
- data/lib/spark/command_validator.rb +34 -0
- data/lib/spark/config.rb +244 -0
- data/lib/spark/constant.rb +14 -0
- data/lib/spark/context.rb +304 -0
- data/lib/spark/error.rb +50 -0
- data/lib/spark/ext/hash.rb +41 -0
- data/lib/spark/ext/integer.rb +25 -0
- data/lib/spark/ext/io.rb +57 -0
- data/lib/spark/ext/ip_socket.rb +29 -0
- data/lib/spark/ext/module.rb +58 -0
- data/lib/spark/ext/object.rb +24 -0
- data/lib/spark/ext/string.rb +24 -0
- data/lib/spark/helper.rb +10 -0
- data/lib/spark/helper/logger.rb +40 -0
- data/lib/spark/helper/parser.rb +85 -0
- data/lib/spark/helper/serialize.rb +71 -0
- data/lib/spark/helper/statistic.rb +93 -0
- data/lib/spark/helper/system.rb +42 -0
- data/lib/spark/java_bridge.rb +19 -0
- data/lib/spark/java_bridge/base.rb +203 -0
- data/lib/spark/java_bridge/jruby.rb +23 -0
- data/lib/spark/java_bridge/rjb.rb +41 -0
- data/lib/spark/logger.rb +76 -0
- data/lib/spark/mllib.rb +100 -0
- data/lib/spark/mllib/classification/common.rb +31 -0
- data/lib/spark/mllib/classification/logistic_regression.rb +223 -0
- data/lib/spark/mllib/classification/naive_bayes.rb +97 -0
- data/lib/spark/mllib/classification/svm.rb +135 -0
- data/lib/spark/mllib/clustering/gaussian_mixture.rb +82 -0
- data/lib/spark/mllib/clustering/kmeans.rb +118 -0
- data/lib/spark/mllib/matrix.rb +120 -0
- data/lib/spark/mllib/regression/common.rb +73 -0
- data/lib/spark/mllib/regression/labeled_point.rb +41 -0
- data/lib/spark/mllib/regression/lasso.rb +100 -0
- data/lib/spark/mllib/regression/linear.rb +124 -0
- data/lib/spark/mllib/regression/ridge.rb +97 -0
- data/lib/spark/mllib/ruby_matrix/matrix_adapter.rb +53 -0
- data/lib/spark/mllib/ruby_matrix/vector_adapter.rb +57 -0
- data/lib/spark/mllib/stat/distribution.rb +12 -0
- data/lib/spark/mllib/vector.rb +185 -0
- data/lib/spark/rdd.rb +1328 -0
- data/lib/spark/sampler.rb +92 -0
- data/lib/spark/serializer.rb +24 -0
- data/lib/spark/serializer/base.rb +170 -0
- data/lib/spark/serializer/cartesian.rb +37 -0
- data/lib/spark/serializer/marshal.rb +19 -0
- data/lib/spark/serializer/message_pack.rb +25 -0
- data/lib/spark/serializer/oj.rb +25 -0
- data/lib/spark/serializer/pair.rb +27 -0
- data/lib/spark/serializer/utf8.rb +25 -0
- data/lib/spark/sort.rb +189 -0
- data/lib/spark/stat_counter.rb +125 -0
- data/lib/spark/storage_level.rb +39 -0
- data/lib/spark/version.rb +3 -0
- data/lib/spark/worker/master.rb +144 -0
- data/lib/spark/worker/spark_files.rb +15 -0
- data/lib/spark/worker/worker.rb +197 -0
- data/ruby-spark.gemspec +36 -0
- data/spec/generator.rb +37 -0
- data/spec/inputs/lorem_300.txt +316 -0
- data/spec/inputs/numbers/1.txt +50 -0
- data/spec/inputs/numbers/10.txt +50 -0
- data/spec/inputs/numbers/11.txt +50 -0
- data/spec/inputs/numbers/12.txt +50 -0
- data/spec/inputs/numbers/13.txt +50 -0
- data/spec/inputs/numbers/14.txt +50 -0
- data/spec/inputs/numbers/15.txt +50 -0
- data/spec/inputs/numbers/16.txt +50 -0
- data/spec/inputs/numbers/17.txt +50 -0
- data/spec/inputs/numbers/18.txt +50 -0
- data/spec/inputs/numbers/19.txt +50 -0
- data/spec/inputs/numbers/2.txt +50 -0
- data/spec/inputs/numbers/20.txt +50 -0
- data/spec/inputs/numbers/3.txt +50 -0
- data/spec/inputs/numbers/4.txt +50 -0
- data/spec/inputs/numbers/5.txt +50 -0
- data/spec/inputs/numbers/6.txt +50 -0
- data/spec/inputs/numbers/7.txt +50 -0
- data/spec/inputs/numbers/8.txt +50 -0
- data/spec/inputs/numbers/9.txt +50 -0
- data/spec/inputs/numbers_0_100.txt +101 -0
- data/spec/inputs/numbers_1_100.txt +100 -0
- data/spec/lib/collect_spec.rb +42 -0
- data/spec/lib/command_spec.rb +68 -0
- data/spec/lib/config_spec.rb +64 -0
- data/spec/lib/context_spec.rb +163 -0
- data/spec/lib/ext_spec.rb +72 -0
- data/spec/lib/external_apps_spec.rb +45 -0
- data/spec/lib/filter_spec.rb +80 -0
- data/spec/lib/flat_map_spec.rb +100 -0
- data/spec/lib/group_spec.rb +109 -0
- data/spec/lib/helper_spec.rb +19 -0
- data/spec/lib/key_spec.rb +41 -0
- data/spec/lib/manipulation_spec.rb +114 -0
- data/spec/lib/map_partitions_spec.rb +87 -0
- data/spec/lib/map_spec.rb +91 -0
- data/spec/lib/mllib/classification_spec.rb +54 -0
- data/spec/lib/mllib/clustering_spec.rb +35 -0
- data/spec/lib/mllib/matrix_spec.rb +32 -0
- data/spec/lib/mllib/regression_spec.rb +116 -0
- data/spec/lib/mllib/vector_spec.rb +77 -0
- data/spec/lib/reduce_by_key_spec.rb +118 -0
- data/spec/lib/reduce_spec.rb +131 -0
- data/spec/lib/sample_spec.rb +46 -0
- data/spec/lib/serializer_spec.rb +13 -0
- data/spec/lib/sort_spec.rb +58 -0
- data/spec/lib/statistic_spec.rb +168 -0
- data/spec/lib/whole_text_files_spec.rb +33 -0
- data/spec/spec_helper.rb +39 -0
- metadata +301 -0
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_Base = Spark::Command::Base
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# -------------------------------------------------------------------------------------------------
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# CombineByKey
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class Spark::Command::CombineByKey
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# ---------------
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class Base < Spark::Command::Base
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def run(iterator, *)
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_run(iterator).to_a
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end
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def lazy_run(iterator, *)
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_run(iterator).lazy
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end
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end
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# ---------------
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class Combine < Base
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variable :create_combiner
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variable :merge_value
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def _run(iterator)
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# Not use combiners[key] ||= ..
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# it tests nil and not has_key?
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combiners = {}
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iterator.each do |key, value|
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if combiners.has_key?(key)
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combiners[key] = @merge_value.call(combiners[key], value)
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else
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combiners[key] = @create_combiner.call(value)
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end
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end
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combiners
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end
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end
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# ---------------
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class Merge < Base
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variable :merge_combiners
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def _run(iterator, *)
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combiners = {}
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iterator.each do |key, value|
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if combiners.has_key?(key)
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combiners[key] = @merge_combiners.call(combiners[key], value)
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else
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combiners[key] = value
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end
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end
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combiners
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end
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end
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# ---------------
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class CombineWithZero < Base
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variable :zero_value, function: false, type: Object
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variable :merge_value
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def _run(iterator)
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# Not use combiners[key] ||= ..
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# it tests nil and not has_key?
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combiners = {}
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iterator.each do |key, value|
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unless combiners.has_key?(key)
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combiners[key] = @zero_value
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end
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combiners[key] = @merge_value.call(combiners[key], value)
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end
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combiners
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end
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end
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# ---------------
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end
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# -------------------------------------------------------------------------------------------------
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# MapValues
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class Spark::Command::MapValues < _Base
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variable :map_function
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def run(iterator, *)
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iterator.map! do |item|
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item[1] = @map_function.call(item[1])
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item
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end
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iterator
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end
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def lazy_run(iterator, *)
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iterator.map do |item|
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item[1] = @map_function.call(item[1])
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item
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end
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end
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end
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# -------------------------------------------------------------------------------------------------
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# FlatMapValues
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class Spark::Command::FlatMapValues < _Base
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variable :map_function
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def run(iterator, *)
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iterator.map! do |(key, values)|
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values = @map_function.call(values)
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values.flatten!(1)
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values.map! do |value|
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[key, value]
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end
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end
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iterator.flatten!(1)
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iterator
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end
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end
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_Base = Spark::Command::Base
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# -------------------------------------------------------------------------------------------------
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# Sort
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class Spark::Command::SortByKey < _Base
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variable :key_function
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variable :ascending, function: false, type: [TrueClass, FalseClass]
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variable :spilling, function: false, type: [TrueClass, FalseClass]
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variable :memory, function: false, type: [Numeric, NilClass]
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variable :serializer, function: false, type: Spark::Serializer::Base
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# Currently disabled
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def before_run
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@spilling = false
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end
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def run(iterator, _)
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if @spilling
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iterator = run_with_spilling(iterator.each)
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else
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run_without_spilling(iterator)
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end
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iterator
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end
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def run_with_enum(iterator, _)
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if @spilling
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iterator = run_with_spilling(iterator)
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else
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iterator = iterator.to_a
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run_without_spilling(iterator)
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end
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iterator
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end
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private
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def run_with_spilling(iterator)
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sorter = Spark::ExternalSorter.new(@memory, @serializer)
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sorter.sort_by(iterator, @ascending, @key_function)
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end
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def run_without_spilling(iterator)
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iterator.sort_by!(&@key_function)
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iterator.reverse! unless @ascending
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end
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end
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_Base = Spark::Command::Base
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# -------------------------------------------------------------------------------------------------
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# Sample
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class Spark::Command::Sample < _Base
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variable :with_replacement, function: false, type: [TrueClass, FalseClass]
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variable :fraction, function: false, type: Numeric
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variable :seed, function: false, type: [NilClass, Numeric]
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def run(iterator, _)
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sampler.sample(iterator)
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end
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def lazy_run(iterator, _)
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sampler.lazy_sample(iterator)
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end
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def sampler
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@sampler ||= _sampler
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end
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def _sampler
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if @with_replacement
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sampler = Spark::Sampler::Poisson
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else
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sampler = Spark::Sampler::Uniform
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end
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sampler = sampler.new(@fraction, @seed)
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end
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end
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# -------------------------------------------------------------------------------------------------
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# Stats
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class Spark::Command::Stats < _Base
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def run(iterator, *)
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[Spark::StatCounter.new(iterator)]
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end
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def lazy_run(iterator, *)
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run(iterator)
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end
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end
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# -------------------------------------------------------------------------------------------------
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# Histogram
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class Spark::Command::Histogram < _Base
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include Spark::Helper::Statistic
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variable :even, function: false, type: [TrueClass, FalseClass]
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variable :buckets, function: false, type: Array
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def run(iterator, *)
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counters = Array.new(counter_size) { 0 }
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iterator.each do |item|
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if item.nil? || (item.is_a?(Float) && !item.finite?) || item > max || item < min
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next
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end
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x = bucket_function.call(item)
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if x.nil?
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# next
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else
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counters[x] += 1
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end
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end
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[counters]
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end
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def lazy_run(iterator, *)
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run(iterator)
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end
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private
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def min
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@buckets.first
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end
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def max
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@buckets.last
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end
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def counter_size
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+
@buckets.size-1
|
91
|
+
end
|
92
|
+
|
93
|
+
def increment
|
94
|
+
@buckets[1]-@buckets[0]
|
95
|
+
end
|
96
|
+
|
97
|
+
# Decide which bucket function to pass. We decide here rather than having
|
98
|
+
# a general function so that the decission need only be made once.
|
99
|
+
def bucket_function
|
100
|
+
@bucket_function ||= _bucket_function
|
101
|
+
end
|
102
|
+
|
103
|
+
def _bucket_function
|
104
|
+
if @even
|
105
|
+
fast_bucket_function
|
106
|
+
else
|
107
|
+
basic_bucket_function
|
108
|
+
end
|
109
|
+
end
|
110
|
+
|
111
|
+
# Determine the bucket function in constant time.
|
112
|
+
# Requires that buckets are evenly spaced
|
113
|
+
def fast_bucket_function
|
114
|
+
Proc.new do |item|
|
115
|
+
if item.is_a?(Float) && item.nan?
|
116
|
+
nil
|
117
|
+
else
|
118
|
+
bucket_number = (item - min)/increment
|
119
|
+
if bucket_number > counter_size || bucket_number < 0
|
120
|
+
nil
|
121
|
+
else
|
122
|
+
[bucket_number.to_i, counter_size-1].min
|
123
|
+
end
|
124
|
+
end
|
125
|
+
end
|
126
|
+
end
|
127
|
+
|
128
|
+
# Basic bucket function. Same as right bisect.
|
129
|
+
def basic_bucket_function
|
130
|
+
Proc.new do |item|
|
131
|
+
bucket_number = bisect_right(@buckets, item) - 1
|
132
|
+
|
133
|
+
# Counters is @buckets.size - 1
|
134
|
+
# [bucket_number, counter_size-1].min
|
135
|
+
|
136
|
+
if bucket_number > counter_size-1
|
137
|
+
counter_size-1
|
138
|
+
else
|
139
|
+
bucket_number
|
140
|
+
end
|
141
|
+
end
|
142
|
+
end
|
143
|
+
|
144
|
+
end
|
@@ -0,0 +1,141 @@
|
|
1
|
+
require 'spark/command_validator'
|
2
|
+
|
3
|
+
module Spark
|
4
|
+
##
|
5
|
+
# Builder for building correct {Spark::Command}
|
6
|
+
#
|
7
|
+
class CommandBuilder
|
8
|
+
|
9
|
+
extend Forwardable
|
10
|
+
|
11
|
+
include Spark::Helper::Serialize
|
12
|
+
include Spark::Helper::System
|
13
|
+
include Spark::CommandValidator
|
14
|
+
|
15
|
+
attr_reader :command
|
16
|
+
|
17
|
+
def_delegators :@command, :serializer, :serializer=, :deserializer, :deserializer=, :commands,
|
18
|
+
:commands=, :libraries, :libraries=, :bound_objects, :bound_objects=
|
19
|
+
|
20
|
+
def initialize(serializer, deserializer=nil)
|
21
|
+
create_command
|
22
|
+
self.serializer = serializer
|
23
|
+
self.deserializer = deserializer || serializer.dup
|
24
|
+
end
|
25
|
+
|
26
|
+
def create_command
|
27
|
+
@command = Spark::Command.new
|
28
|
+
end
|
29
|
+
|
30
|
+
# Do not user Marshal.dump(Marshal.load(self)) because some variables
|
31
|
+
# have marshal_dump prepared for worker.
|
32
|
+
def deep_copy
|
33
|
+
copy = self.dup
|
34
|
+
copy.create_command
|
35
|
+
copy.serializer = self.serializer.dup
|
36
|
+
copy.deserializer = self.deserializer.dup
|
37
|
+
copy.commands = self.commands.dup
|
38
|
+
copy.libraries = self.libraries.dup
|
39
|
+
copy.bound_objects = self.bound_objects.dup
|
40
|
+
copy
|
41
|
+
end
|
42
|
+
|
43
|
+
# Serialize Command class for worker
|
44
|
+
# Java use signed number
|
45
|
+
def build
|
46
|
+
unpack_chars(Marshal.dump(@command))
|
47
|
+
end
|
48
|
+
|
49
|
+
def add_command(klass, *args)
|
50
|
+
variables = klass.settings.variables
|
51
|
+
validate_size(variables, args)
|
52
|
+
|
53
|
+
built_args = []
|
54
|
+
variables.values.zip(args) do |var, arg|
|
55
|
+
if var[:function]
|
56
|
+
arg = serialize_function(arg)
|
57
|
+
end
|
58
|
+
|
59
|
+
validate(arg, var)
|
60
|
+
built_args << arg
|
61
|
+
end
|
62
|
+
|
63
|
+
comm = klass.new(*built_args)
|
64
|
+
@command.commands << comm
|
65
|
+
self
|
66
|
+
end
|
67
|
+
|
68
|
+
def add_library(*libraries)
|
69
|
+
@command.libraries += libraries
|
70
|
+
end
|
71
|
+
|
72
|
+
def bind(objects)
|
73
|
+
objects.symbolize_keys!
|
74
|
+
@command.bound_objects.merge!(objects)
|
75
|
+
end
|
76
|
+
|
77
|
+
private
|
78
|
+
|
79
|
+
# Serialized can be Proc and Method
|
80
|
+
#
|
81
|
+
# === Func
|
82
|
+
# * *string:* already serialized proc
|
83
|
+
# * *proc:* proc
|
84
|
+
# * *symbol:* name of method
|
85
|
+
# * *method:* Method class
|
86
|
+
#
|
87
|
+
def serialize_function(func)
|
88
|
+
case func
|
89
|
+
when String
|
90
|
+
serialize_function_from_string(func)
|
91
|
+
when Symbol
|
92
|
+
serialize_function_from_symbol(func)
|
93
|
+
when Proc
|
94
|
+
serialize_function_from_proc(func)
|
95
|
+
when Method
|
96
|
+
serialize_function_from_method(func)
|
97
|
+
else
|
98
|
+
raise Spark::CommandError, 'You must enter String, Symbol, Proc or Method.'
|
99
|
+
end
|
100
|
+
end
|
101
|
+
|
102
|
+
def serialize_function_from_string(string)
|
103
|
+
{type: 'proc', content: string}
|
104
|
+
end
|
105
|
+
|
106
|
+
def serialize_function_from_symbol(symbol)
|
107
|
+
{type: 'symbol', content: symbol}
|
108
|
+
end
|
109
|
+
|
110
|
+
# Serialize Proc as String
|
111
|
+
#
|
112
|
+
# lambda{|x| x*x}.to_source
|
113
|
+
# # => "proc { |x| (x * x) }"
|
114
|
+
#
|
115
|
+
def serialize_function_from_proc(proc)
|
116
|
+
serialize_function_from_string(proc.to_source)
|
117
|
+
rescue
|
118
|
+
raise Spark::SerializeError, 'Proc can not be serialized. Use String instead.'
|
119
|
+
end
|
120
|
+
|
121
|
+
# Serialize method as string
|
122
|
+
#
|
123
|
+
# def test(x)
|
124
|
+
# x*x
|
125
|
+
# end
|
126
|
+
# serialize_function_from_method(method(:test))
|
127
|
+
#
|
128
|
+
# # => "def test(x)\n x*x\nend\n"
|
129
|
+
#
|
130
|
+
def serialize_function_from_method(meth)
|
131
|
+
if pry?
|
132
|
+
meth = Pry::Method.new(meth)
|
133
|
+
end
|
134
|
+
|
135
|
+
{type: 'method', name: meth.name, content: meth.source}
|
136
|
+
rescue
|
137
|
+
raise Spark::SerializeError, 'Method can not be serialized. Use full path or Proc.'
|
138
|
+
end
|
139
|
+
|
140
|
+
end
|
141
|
+
end
|