ruby-em_algorithm 0.0.2

data/lib/em_algorithm/models/model.rb

@@ -0,0 +1,19 @@
+module EMAlgorithm
+  class Model
+    # round digit for gnuplot
+    DIGIT = 6
+
+    def pdf(x)
+      # method "probability_density_function" must be implemented
+      probability_density_function(x)
+    end
+
+    def value_distribution(const, x)
+      const * pdf(x)
+    end
+
+    def value_distribution_to_gnuplot(const)
+      "#{const.round(DIGIT)}*(#{to_gnuplot(:mixture_only)})"
+    end
+  end
+end

data/lib/em_algorithm/models/model.rb~

@@ -0,0 +1,19 @@
+module EMAlgorithm
+  class Model
+    # round digit for gnuplot
+    DIGIT = 6
+
+    def pdf(x)
+      # method "probability_density_function" must be implemented
+      probability_density_function(x)
+    end
+
+    def value_distribution(const, x)
+      const * pdf(x)
+    end
+
+    def value_distribution_to_gnuplot(const)
+      "#{const.round(DIGIT)}*(#{to_gnuplot(:mixture_only)})"
+    end
+  end
+end

data/lib/ruby-em_algorithm.rb

@@ -0,0 +1,3 @@
+require 'gsl'
+require "ruby-em_algorithm/version"
+require 'em_algorithm/base'

data/lib/ruby-em_algorithm/version.rb

@@ -0,0 +1,3 @@
+module EMAlgorithm
+  VERSION = "0.0.2"
+end

data/ruby-em_algorithm.gemspec

@@ -0,0 +1,21 @@
+# -*- encoding: utf-8 -*-
+require File.expand_path('../lib/ruby-em_algorithm/version', __FILE__)
+
+Gem::Specification.new do |gem|
+  gem.add_development_dependency 'rake'
+  gem.add_development_dependency 'rspec', '~> 2.8'
+  gem.add_development_dependency 'gsl'
+
+  gem.authors       = ["Jun Sugahara", "Toyokazu Akiyama"]
+  gem.email         = ["toyokazu@gmail.com"]
+  gem.description   = %q{EMAlgorithm for Ruby}
+  gem.summary       = %q{EMAlgorithm for Ruby}
+  gem.homepage      = ""
+
+  gem.files         = `find . -not \\( -regex ".*\\.git.*" -o -regex "\\./pkg.*" -o -regex "\\./spec.*" \\)`.split("\n").map{ |f| f.gsub(/^.\//, '') }
+  gem.test_files    = `find spec/*`.split("\n")
+  gem.name          = "ruby-em_algorithm"
+  gem.require_paths = ["lib"]
+  gem.version       = EMAlgorithm::VERSION
+
+end

data/spec/spec_helper.rb

@@ -0,0 +1,9 @@
+require 'rspec'
+require 'rack/test'
+require 'ruby-em_algorithm/version'
+require 'ruby-em_algorithm'
+
+RSpec.configure do |config|
+    config.include Rack::Test::Methods
+    config.color_enabled = true
+end

metadata

@@ -0,0 +1,178 @@
+--- !ruby/object:Gem::Specification
+name: ruby-em_algorithm
+version: !ruby/object:Gem::Version
+  version: 0.0.2
+  prerelease: 
+platform: ruby
+authors:
+- Jun Sugahara
+- Toyokazu Akiyama
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2013-01-22 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.8'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.8'
+- !ruby/object:Gem::Dependency
+  name: gsl
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+description: EMAlgorithm for Ruby
+email:
+- toyokazu@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- example/.ex1.rb.swp
+- example/.ex2.rb.swp
+- example/.ex3-tmp.rb.swp
+- example/.ex3.rb.swp
+- example/data/2dim-gmm-new.txt
+- example/data/2dim-gmm-simple.txt
+- example/data/2dim-gmm-test.txt
+- example/data/2dim-gmm-test2.txt
+- example/data/2dim-gmm-test3.csv
+- example/data/2dim-gmm-test3.txt
+- example/data/2dim-gmm-test4.csv
+- example/data/2dim-gmm-test4.txt
+- example/data/2dim-gmm-without_weight-small.txt
+- example/data/2dim-gmm-without_weight.txt
+- example/data/2dim-gmm.txt
+- example/data/gmm-new.txt
+- example/data/gmm-simple.txt
+- example/data/gmm.txt
+- example/data/old-gmm.txt
+- example/ex1.rb
+- example/ex1.rb~
+- example/ex2.rb
+- example/ex2.rb~
+- example/ex3-tmp.rb
+- example/ex3-tmp.rb~
+- example/ex3.rb
+- example/ex3.rb~
+- example/tools/.2dim.rb.swp
+- example/tools/2dim.rb
+- example/tools/2dim.rb~
+- example/tools/boxmuller.rb
+- example/tools/boxmuller.rb~
+- example/tools/conv_from_yaml.rb
+- example/tools/conv_from_yaml_to_csv.rb
+- example/tools/conv_to_yaml.rb
+- example/tools/ellipsoid.gnuplot
+- example/tools/ellipsoid.gnuplot~
+- example/tools/histogram.rb
+- example/tools/histogram2d.rb
+- example/tools/histogram2d.rb~
+- example/tools/kmeans.rb
+- example/tools/mean.rb
+- example/tools/table.data
+- example/tools/tmp.txt
+- example/tools/xmeans.R
+- example/tools/xmeans.rb
+- Gemfile
+- Gemfile.lock
+- lib/em_algorithm/.base.rb.swp
+- lib/em_algorithm/base.rb
+- lib/em_algorithm/base.rb~
+- lib/em_algorithm/convergence/.chi_square.rb.swp
+- lib/em_algorithm/convergence/.likelihood.rb.swp
+- lib/em_algorithm/convergence/check_method.rb
+- lib/em_algorithm/convergence/check_method.rb~
+- lib/em_algorithm/convergence/chi_square.rb
+- lib/em_algorithm/convergence/chi_square.rb~
+- lib/em_algorithm/convergence/likelihood.rb
+- lib/em_algorithm/convergence/likelihood.rb~
+- lib/em_algorithm/models/.gaussian.rb.swp
+- lib/em_algorithm/models/.md_gaussian.rb.swp
+- lib/em_algorithm/models/.mixture.rb.swp
+- lib/em_algorithm/models/.model.rb.swp
+- lib/em_algorithm/models/gaussian.rb
+- lib/em_algorithm/models/gaussian.rb~
+- lib/em_algorithm/models/md_gaussian.rb
+- lib/em_algorithm/models/md_gaussian.rb~
+- lib/em_algorithm/models/mixture.rb
+- lib/em_algorithm/models/mixture.rb~
+- lib/em_algorithm/models/model.rb
+- lib/em_algorithm/models/model.rb~
+- lib/ruby-em_algorithm/version.rb
+- lib/ruby-em_algorithm.rb
+- Rakefile
+- README.md
+- ruby-em_algorithm.gemspec
+- spec/spec_helper.rb
+homepage: ''
+licenses: []
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
+      - 0
+      hash: -1323721423323207439
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
+      - 0
+      hash: -1323721423323207439
+requirements: []
+rubyforge_project: 
+rubygems_version: 1.8.24
+signing_key: 
+specification_version: 3
+summary: EMAlgorithm for Ruby
+test_files:
+- spec/spec_helper.rb