renalware-core 2.0.149 → 2.0.151
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- checksums.yaml +4 -4
- data/README.md +23 -2
- data/app/assets/config/renalware/core/manifest.js +1 -0
- data/app/assets/images/renalware/icons/align-justify.svg +3 -0
- data/app/assets/images/renalware/icons/bar-chart.svg +1 -0
- data/app/assets/images/renalware/icons/chart-bar.svg +1 -0
- data/app/assets/images/renalware/icons/chart.svg +3 -0
- data/app/assets/images/renalware/icons/list-bullet.svg +1 -0
- data/app/assets/images/renalware/icons/list.svg +8 -0
- data/app/assets/javascripts/renalware/README.md +25 -1
- data/app/assets/javascripts/renalware/components/dialogs.js.erb +3 -1
- data/app/assets/javascripts/renalware/components/hd.js +2 -2
- data/app/assets/javascripts/renalware/components/letters.js +1 -1
- data/app/assets/javascripts/renalware/components/masonry.run.js +2 -2
- data/app/assets/javascripts/renalware/components/patient_menu.js +1 -1
- data/app/assets/javascripts/renalware/components/toggler.js +1 -1
- data/app/assets/javascripts/renalware/rollup_compiled.css +87457 -0
- data/app/assets/javascripts/renalware/rollup_compiled.js +3148 -3
- data/app/assets/stylesheets/renalware/core.scss +1 -0
- data/app/assets/stylesheets/renalware/modules/_hd.scss +8 -4
- data/app/assets/stylesheets/renalware/modules/_pathology.scss +8 -1
- data/app/assets/stylesheets/renalware/modules/_pd.scss +35 -0
- data/app/assets/stylesheets/renalware/partials/_charting.scss +17 -0
- data/app/assets/stylesheets/renalware/partials/_forms.scss +5 -1
- data/app/assets/stylesheets/renalware/partials/_simple_form.scss +8 -0
- data/app/assets/stylesheets/renalware/partials/_utilities.scss +12 -0
- data/app/assets/stylesheets/tailwind/tailwind.css +3 -0
- data/app/components/renalware/application_component.rb +2 -1
- data/app/components/renalware/events/{biopsies_component.html.slim → event_list_component.html.slim} +5 -4
- data/app/components/renalware/events/event_list_component.rb +77 -0
- data/app/components/renalware/hd/administer_prescription_dropdown_component.rb +1 -5
- data/app/components/renalware/hd/prescription_last_administration_component.html.slim +0 -1
- data/app/components/renalware/hd/prescription_last_administration_component.rb +8 -7
- data/app/components/renalware/letters/unread_electronic_ccs_component.rb +1 -0
- data/app/components/renalware/pathology/chart_component.html.slim +5 -0
- data/app/components/renalware/pathology/chart_component.rb +40 -0
- data/app/components/renalware/pathology/sparkline_component.html.slim +15 -0
- data/app/components/renalware/pathology/sparkline_component.rb +135 -0
- data/app/components/renalware/patients/side_menu_component.rb +2 -11
- data/app/components/renalware/pd/adequacy_results_component.html.slim +9 -0
- data/app/components/renalware/pd/adequacy_results_component.rb +39 -0
- data/app/components/renalware/pd/pet_results_component.html.slim +37 -0
- data/app/components/renalware/pd/pet_results_component.rb +84 -0
- data/app/{views/renalware/surveys/_eq5d_summary_part.html.slim → components/renalware/surveys/eq5d_component.html.slim} +5 -5
- data/app/{models/renalware/surveys/eq5d_summary_part.rb → components/renalware/surveys/eq5d_component.rb} +7 -5
- data/app/{views/renalware/surveys/_pos_s_summary_part.html.slim → components/renalware/surveys/pos_s_component.html.slim} +6 -9
- data/app/{models/renalware/surveys/pos_s_summary_part.rb → components/renalware/surveys/pos_s_component.rb} +9 -5
- data/app/components/renalware/system/admin_menu_component.rb +2 -2
- data/app/components/renalware/system/article_component.html.slim +3 -0
- data/app/components/renalware/system/article_component.rb +9 -0
- data/app/controllers/renalware/admissions/consults_controller.rb +1 -1
- data/app/controllers/renalware/concerns/pdf_renderable.rb +1 -1
- data/app/controllers/renalware/hd/scheduling/diaries_controller.rb +1 -1
- data/app/controllers/renalware/medications/prescriptions_controller.rb +1 -1
- data/app/controllers/renalware/pathology/charts_controller.rb +21 -0
- data/app/controllers/renalware/pathology/current_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/historical_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/nearest_observation_results_controller.rb +52 -0
- data/app/controllers/renalware/pathology/observation_requests_controller.rb +1 -1
- data/app/controllers/renalware/pathology/observations_controller.rb +26 -2
- data/app/controllers/renalware/pathology/requests/requests_controller.rb +7 -5
- data/app/controllers/renalware/pd/adequacy_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/adequacy_results_controller.rb +98 -0
- data/app/controllers/renalware/pd/pet_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/pet_results_controller.rb +122 -0
- data/app/controllers/renalware/pd/unified_pet_adequacies_controller.rb +102 -0
- data/app/controllers/renalware/renal/aki_alerts_controller.rb +1 -1
- data/app/controllers/renalware/renal/registry_preflight_checks_controller.rb +55 -19
- data/app/documents/renalware/age.rb +3 -1
- data/app/helpers/renalware/application_helper.rb +7 -7
- data/app/helpers/renalware/article_helper.rb +3 -3
- data/app/helpers/renalware/boolean_helper.rb +15 -0
- data/app/helpers/renalware/clipboard_helper.rb +2 -3
- data/app/helpers/renalware/dashboards_helper.rb +2 -2
- data/app/helpers/renalware/definition_list_helper.rb +3 -3
- data/app/helpers/renalware/devise_helper.rb +1 -1
- data/app/helpers/renalware/form_helper.rb +2 -2
- data/app/helpers/renalware/letters_helper.rb +1 -1
- data/app/helpers/renalware/link_helper.rb +1 -1
- data/app/helpers/renalware/mdm_helper.rb +1 -0
- data/app/helpers/renalware/navigation_helper.rb +1 -1
- data/app/helpers/renalware/patient_helper.rb +2 -2
- data/app/helpers/renalware/snippets_helper.rb +9 -10
- data/app/helpers/renalware/toggle_helper.rb +6 -6
- data/app/helpers/renalware/tooltip_helper.rb +14 -16
- data/app/inputs/clock_picker_input.rb +3 -3
- data/app/inputs/date_picker_input.rb +3 -3
- data/app/inputs/simple_time_input.rb +3 -3
- data/app/inputs/trix_editor_input.rb +2 -0
- data/app/javascript/renalware/controllers/blas_controller.js +37 -0
- data/app/javascript/renalware/controllers/modal_controller.js +137 -0
- data/app/javascript/renalware/controllers/pathology/sparklines_controller.js +206 -0
- data/app/javascript/renalware/controllers/pd/pet_charts_controller.js +169 -0
- data/app/javascript/renalware/controllers/session_controller.js +1 -1
- data/app/javascript/renalware/controllers/simple_toggle_controller.js +17 -0
- data/app/javascript/renalware/controllers/tabs_controller.js +43 -0
- data/app/javascript/renalware/controllers/toggle_controller.js +2 -2
- data/app/javascript/renalware/index.js +10 -0
- data/app/models/concerns/renalware/patients_ransack_helper.rb +2 -0
- data/app/models/renalware/clinics/body_surface_area.rb +40 -0
- data/app/models/renalware/clinics/clinic_visit.rb +21 -1
- data/app/models/renalware/clinics/total_body_water.rb +63 -0
- data/app/models/renalware/events/advanced_care_plan.rb +24 -0
- data/app/models/renalware/events/clinical_frailty_score.rb +24 -0
- data/app/models/renalware/feeds/hl7_message.rb +1 -0
- data/app/models/renalware/hd/prescription_last_administration_query.rb +4 -0
- data/app/models/renalware/hd/session_forms/pdf_renderer.rb +1 -1
- data/app/models/renalware/hd/sessions/auditable_session_collection.rb +4 -1
- data/app/models/renalware/letters/html_renderer.rb +1 -1
- data/app/models/renalware/letters/printing/duplex_interleaved_pdf_renderer.rb +1 -1
- data/app/models/renalware/letters/recipient_address_pdf_renderer.rb +1 -1
- data/app/models/renalware/pathology/nearest_observations_query.rb +44 -0
- data/app/models/renalware/pathology/observations_jsonb_serializer.rb +1 -1
- data/app/models/renalware/patient.rb +16 -1
- data/app/models/renalware/patients/alert.rb +1 -0
- data/app/models/renalware/patients/ingestion/update_master_patient_index.rb +1 -0
- data/app/models/renalware/patients/patient_hospital_identifiers.rb +1 -0
- data/app/models/renalware/pd.rb +2 -0
- data/app/models/renalware/pd/adequacy_calculated_attributes.rb +159 -0
- data/app/models/renalware/pd/adequacy_result.rb +76 -0
- data/app/models/renalware/pd/apd/glucose_calculator.rb +1 -0
- data/app/models/renalware/pd/patient.rb +4 -0
- data/app/models/renalware/pd/pet_dextrose_concentration.rb +17 -0
- data/app/models/renalware/pd/pet_result.rb +92 -0
- data/app/models/renalware/pd/unified_pet_adequacy_form.rb +46 -0
- data/app/models/renalware/renal/registry/preflight_checks/missing_esrf_query.rb +50 -0
- data/app/models/renalware/snippets/duplicate_snippet_title_generator.rb +1 -0
- data/app/models/renalware/transplants/recipient_workup_builder.rb +1 -0
- data/app/models/renalware/transplants/registration_status.rb +1 -1
- data/app/models/renalware/ukrdc/outgoing/rendering/patient_number.rb +1 -1
- data/app/models/renalware/user.rb +10 -0
- data/app/pdfs/renalware/events/event_pdf.rb +1 -0
- data/app/policies/renalware/events/advanced_care_plan_policy.rb +10 -0
- data/app/policies/renalware/events/clinical_frailty_score_policy.rb +10 -0
- data/app/policies/renalware/pd/adequacy_result_policy.rb +15 -0
- data/app/policies/renalware/pd/pet_result_policy.rb +15 -0
- data/app/policies/renalware/renal/registry_preflight_check_policy.rb +4 -0
- data/app/presenters/renalware/clinical/profile_presenter.rb +1 -0
- data/app/presenters/renalware/hd/dashboard_presenter.rb +1 -0
- data/app/presenters/renalware/hd/profile_presenter.rb +1 -0
- data/app/presenters/renalware/hd/scheduling/diary_presenter.rb +1 -0
- data/app/presenters/renalware/hd/session_presenter.rb +1 -0
- data/app/presenters/renalware/hd/unmet_preferences_presenter.rb +1 -1
- data/app/presenters/renalware/mdm_patients_presenter.rb +1 -0
- data/app/presenters/renalware/pd/dashboard_presenter.rb +10 -2
- data/app/presenters/renalware/ukrdc/patient_presenter.rb +1 -0
- data/app/presenters/renalware/user_session_presenter.rb +1 -1
- data/app/validators/renalware/patients/nhs_number_validator.rb +88 -0
- data/app/values/renalware/address.rb +1 -0
- data/app/views/renalware/accesses/assessments/show.html.slim +1 -1
- data/app/views/renalware/accesses/procedures/show.html.slim +1 -1
- data/app/views/renalware/accesses/profiles/show.html.slim +1 -1
- data/app/views/renalware/admin/cache/show.html.slim +36 -0
- data/app/views/renalware/admin/playgrounds/show.html.slim +3 -0
- data/app/views/renalware/clinical/profiles/show.html.slim +11 -1
- data/app/views/renalware/clinics/clinic_visits/_table.html.slim +2 -0
- data/app/views/renalware/clinics/clinic_visits/_table_row.html.slim +2 -0
- data/app/views/renalware/dashboard/letters/_letter.html.slim +1 -1
- data/app/views/renalware/directory/people/show.html.slim +1 -1
- data/app/views/renalware/events/advanced_care_plans/_cell.html.slim +2 -0
- data/app/views/renalware/events/advanced_care_plans/_inputs.html.slim +4 -0
- data/app/views/renalware/events/advanced_care_plans/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/clinical_frailty_score/_cell.html.slim +2 -0
- data/app/views/renalware/events/clinical_frailty_score/_inputs.html.slim +4 -0
- data/app/views/renalware/events/clinical_frailty_score/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/events/_table.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/_show.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/show.html.slim +1 -1
- data/app/views/renalware/hd/prescription_administrations/_form.html.slim +2 -0
- data/app/views/renalware/hd/sessions/_show.html.slim +1 -1
- data/app/views/renalware/hd/witnesses/_form.html.slim +2 -0
- data/app/views/renalware/letters/electronic_receipts/_table.html.slim +1 -1
- data/app/views/renalware/low_clearance/dashboards/show.html.slim +10 -0
- data/app/views/renalware/mdm/_pathology.html.slim +0 -1
- data/app/views/renalware/mdm/show.html.slim +1 -1
- data/app/views/renalware/navigation/_menu.html.slim +1 -0
- data/app/views/renalware/navigation/_pd.html.slim +5 -0
- data/app/views/renalware/pathology/charts/show.html.slim +11 -0
- data/app/views/renalware/pathology/current_observation_results/index.html.slim +6 -0
- data/app/views/renalware/pathology/historical_observation_results/_table.html.slim +4 -3
- data/app/views/renalware/pathology/historical_observation_results/index.html.slim +1 -1
- data/app/views/renalware/pathology/observations/_diff.html.slim +1 -1
- data/app/views/renalware/patients/patients/show.html.slim +1 -1
- data/app/views/renalware/pd/_exit_site_infections.html.slim +4 -0
- data/app/views/renalware/pd/_peritonitis_episodes.html.slim +3 -0
- data/app/views/renalware/pd/adequacy_completions/_filters.html.slim +19 -0
- data/app/views/renalware/pd/adequacy_completions/index.html.slim +4 -0
- data/app/views/renalware/pd/adequacy_results/_form_fields.html.slim +9 -0
- data/app/views/renalware/pd/adequacy_results/_table.html.slim +72 -0
- data/app/views/renalware/pd/adequacy_results/edit.html.slim +89 -0
- data/app/views/renalware/pd/adequacy_results/index.js.erb +1 -0
- data/app/views/renalware/pd/adequacy_results/new.html.slim +8 -0
- data/app/views/renalware/pd/dashboards/show.html.slim +3 -0
- data/app/views/renalware/pd/dashboards/show/_page_actions.html.slim +14 -0
- data/app/views/renalware/pd/pet_completions/_filters.html.slim +24 -0
- data/app/views/renalware/pd/pet_completions/index.html.slim +4 -0
- data/app/views/renalware/pd/pet_results/_form_fields.html.slim +12 -0
- data/app/views/renalware/pd/pet_results/_pathology_results.html.slim +36 -0
- data/app/views/renalware/pd/pet_results/_table.html.slim +62 -0
- data/app/views/renalware/pd/pet_results/edit.html.slim +35 -0
- data/app/views/renalware/pd/pet_results/index.js.erb +1 -0
- data/app/views/renalware/pd/pet_results/new.html.slim +8 -0
- data/app/views/renalware/pd/unified_pet_adequacies/_form.html.slim +22 -0
- data/app/views/renalware/pd/unified_pet_adequacies/new.html.slim +2 -0
- data/app/views/renalware/renal/profiles/show.html.slim +1 -1
- data/app/views/renalware/renal/registry_preflight_checks/_filters.html.slim +5 -3
- data/app/views/renalware/renal/registry_preflight_checks/_navigation.html.slim +1 -0
- data/app/views/renalware/renal/registry_preflight_checks/deaths.html.slim +2 -1
- data/app/views/renalware/renal/registry_preflight_checks/missing_esrf.html.slim +12 -0
- data/app/views/renalware/renal/registry_preflight_checks/patients.html.slim +1 -2
- data/app/views/renalware/surveys/dashboards/show.html.slim +2 -2
- data/app/views/renalware/transplants/donor_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/mdm/_bottom.html.slim +3 -1
- data/app/views/renalware/transplants/recipient_followups/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_operations/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/registrations/show.html.slim +1 -1
- data/config/initializers/inflections.rb +8 -0
- data/config/initializers/wicked_pdf.rb +12 -0
- data/config/locales/en-GB.yml +1 -1
- data/config/locales/renalware/events/advanced_care_plan.en.yml +12 -0
- data/config/locales/renalware/events/biopsy.en.yml +2 -0
- data/config/locales/renalware/events/clinical_frailty_score.en.yml +16 -0
- data/config/locales/renalware/events/clinical_frailty_score_component.en.yml +8 -0
- data/config/locales/renalware/nhs_number.en.yml +6 -0
- data/config/locales/renalware/pd/adequacy_result.en.yml +9 -0
- data/config/locales/renalware/pd/dashboard.en.yml +3 -0
- data/config/locales/renalware/pd/pet_result.en.yml +23 -0
- data/config/locales/renalware/renal/registry.en.yml +1 -0
- data/config/routes/pathology.rb +6 -0
- data/config/routes/pd.rb +5 -0
- data/config/routes/renal.rb +1 -0
- data/db/functions/generate_secure_id_v01.sql +1 -1
- data/db/migrate/20200226145010_add_unique_indexes.rb +46 -0
- data/db/migrate/20200421082715_add_body_surface_area_to_clinic_visits.rb +8 -0
- data/db/migrate/20200421132911_create_pd_pet_dextrose_concentrations.rb +13 -0
- data/db/migrate/20200421143546_create_pet_results.rb +66 -0
- data/db/migrate/20200427123229_create_adequacy_results.rb +54 -0
- data/db/migrate/20200616115709_add_height_weight_to_pd_adequacy_results.rb +8 -0
- data/db/migrate/20200618144228_add_feature_flags_to_users.rb +14 -0
- data/db/seeds/default/events/event_types.csv +2 -0
- data/lib/renalware/engine.rb +4 -2
- data/lib/renalware/version_number.rb +11 -0
- data/lib/tasks/renalware.rake +7 -1
- data/spec/factories/accesses/profiles.rb +1 -0
- data/spec/factories/events/events_types.rb +12 -0
- data/spec/factories/patients/patients.rb +22 -1
- data/spec/factories/pd/adequacy_results.rb +16 -0
- data/spec/factories/pd/pet_results.rb +9 -0
- metadata +115 -25
- data/app/components/renalware/events/biopsies_component.rb +0 -20
- data/lib/renalware/version.rb +0 -5
@@ -18,6 +18,7 @@ module Renalware
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# is a default new uuid value on the secure_id column
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before_create { self.secure_id ||= SecureRandom.uuid }
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before_save :upcase_local_patient_ids
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# before_validation :strip_spaces_from_nhs_number
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friendly_id :secure_id, use: [:finders]
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# For compactness in urls, remove the dashes, so that
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accepts_nested_attributes_for :current_address
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validates :nhs_number,
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-
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"renalware/patients/nhs_number" => true,
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uniqueness: { case_sensitive: false },
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allow_blank: true
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validates :local_patient_id, uniqueness: { case_sensitive: false }, allow_blank: true
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validates :local_patient_id_2, uniqueness: { case_sensitive: false }, allow_blank: true
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validates :local_patient_id_3, uniqueness: { case_sensitive: false }, allow_blank: true
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validates :email, email: true, allow_blank: true
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attr_accessor :skip_death_validations
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with_options if: :validate_death_attributes?, on: :update do
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validates :died_on, presence: true
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validates :died_on, timeliness: { type: :date }
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document&.diabetes&.diagnosis == true
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end
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# Add spacing to an NHS number e.g. "7465613493" => "746 561 3493"
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# Although this is arguably a view concern, formati
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def nhs_number_formatted
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nhs_number&.gsub(/(\d{3})(\d{3})(\d{4})/, '\1 \2 \3')
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end
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# Overrides Personable mixin
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def to_s(format = :default)
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title_suffix = " (#{title})" if has_title?
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private
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def strip_spaces_from_nhs_number
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return if nhs_number.blank?
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self.nhs_number = nhs_number.delete(" ")
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end
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# Before saving, convert all the local patient ids to upper case
|
169
184
|
# TODO: Use a constant for the max number of local patient ids
|
170
185
|
def upcase_local_patient_ids
|
data/app/models/renalware/pd.rb
CHANGED
@@ -0,0 +1,159 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
# rubocop:disable Metrics/ClassLength
|
4
|
+
module Renalware
|
5
|
+
module PD
|
6
|
+
class AdequacyCalculatedAttributes
|
7
|
+
pattr_initialize [:adequacy!, :age!, :sex!]
|
8
|
+
|
9
|
+
delegate :urine_urea,
|
10
|
+
:height,
|
11
|
+
:weight,
|
12
|
+
:urine_creatinine,
|
13
|
+
:urine_24_vol,
|
14
|
+
:dialysate_urea,
|
15
|
+
:dialysate_creatinine,
|
16
|
+
:dial_24_vol_out,
|
17
|
+
:dial_24_missing,
|
18
|
+
:serum_urea,
|
19
|
+
:serum_creatinine,
|
20
|
+
:urine_24_missing,
|
21
|
+
to: :adequacy,
|
22
|
+
allow_nil: true
|
23
|
+
|
24
|
+
def to_h
|
25
|
+
return {} unless adequacy
|
26
|
+
|
27
|
+
{
|
28
|
+
total_creatinine_clearance: total_creatinine_clearance,
|
29
|
+
pertitoneal_creatinine_clearance: pertitoneal_creatinine_clearance,
|
30
|
+
renal_creatinine_clearance: renal_creatinine_clearance,
|
31
|
+
total_ktv: total_ktv,
|
32
|
+
pertitoneal_ktv: pertitoneal_ktv,
|
33
|
+
renal_ktv: renal_ktv,
|
34
|
+
dietry_protein_intake: dietry_protein_intake
|
35
|
+
}
|
36
|
+
end
|
37
|
+
|
38
|
+
def renal_urine_clearance
|
39
|
+
return if urine_24_missing
|
40
|
+
return if any_are_nil_or_zero?(urine_urea, serum_urea, urine_24_vol)
|
41
|
+
|
42
|
+
(urine_urea * urine_24_vol / 1000.0) / serum_urea * 7.0
|
43
|
+
end
|
44
|
+
|
45
|
+
def renal_creatinine_clearance
|
46
|
+
return if urine_24_missing
|
47
|
+
return if any_are_nil_or_zero?(urine_creatinine, serum_creatinine, urine_24_vol)
|
48
|
+
|
49
|
+
(
|
50
|
+
(urine_creatinine * urine_24_vol) / serum_creatinine * 7.0
|
51
|
+
).round(2)
|
52
|
+
end
|
53
|
+
|
54
|
+
def residual_renal_function
|
55
|
+
return if any_are_nil_or_zero?(
|
56
|
+
body_surface_area,
|
57
|
+
renal_creatinine_clearance,
|
58
|
+
renal_urine_clearance
|
59
|
+
)
|
60
|
+
|
61
|
+
(
|
62
|
+
(renal_creatinine_clearance + renal_urine_clearance) / (2.0 * body_surface_area) * 1.72
|
63
|
+
).to_i
|
64
|
+
end
|
65
|
+
|
66
|
+
def pertitoneal_creatinine_clearance
|
67
|
+
return if dial_24_missing
|
68
|
+
return if any_are_nil_or_zero?(
|
69
|
+
dial_24_vol_out,
|
70
|
+
serum_creatinine,
|
71
|
+
dialysate_creatinine,
|
72
|
+
body_surface_area
|
73
|
+
)
|
74
|
+
|
75
|
+
(
|
76
|
+
(dialysate_creatinine * dial_24_vol_out / 1000.0) /
|
77
|
+
serum_creatinine * 7.0 * 1.72 / body_surface_area
|
78
|
+
).to_i
|
79
|
+
end
|
80
|
+
|
81
|
+
def total_creatinine_clearance
|
82
|
+
return if any_are_nil_or_zero?(residual_renal_function, pertitoneal_creatinine_clearance)
|
83
|
+
|
84
|
+
residual_renal_function + pertitoneal_creatinine_clearance
|
85
|
+
end
|
86
|
+
|
87
|
+
# rubocop:disable Metrics/MethodLength,Metrics/AbcSize
|
88
|
+
def dietry_protein_intake
|
89
|
+
return if urine_24_missing || dial_24_missing
|
90
|
+
return if any_are_nil_or_zero?(
|
91
|
+
dialysate_urea,
|
92
|
+
dial_24_vol_out,
|
93
|
+
urine_urea,
|
94
|
+
urine_24_vol,
|
95
|
+
weight
|
96
|
+
)
|
97
|
+
|
98
|
+
(
|
99
|
+
(
|
100
|
+
19.0 + 0.272 *
|
101
|
+
(
|
102
|
+
(dialysate_urea * dial_24_vol_out / 1000.0) + (urine_urea * urine_24_vol / 1000.0)
|
103
|
+
)
|
104
|
+
) / weight
|
105
|
+
).round(2)
|
106
|
+
end
|
107
|
+
# rubocop:enable Metrics/MethodLength,Metrics/AbcSize
|
108
|
+
|
109
|
+
def renal_ktv
|
110
|
+
return if urine_24_missing
|
111
|
+
return if any_are_nil_or_zero?(
|
112
|
+
urine_urea,
|
113
|
+
serum_urea,
|
114
|
+
urine_24_vol,
|
115
|
+
total_body_water
|
116
|
+
)
|
117
|
+
|
118
|
+
(
|
119
|
+
(urine_urea / serum_urea * urine_24_vol / 1000.0 * 7.0) / total_body_water.to_f
|
120
|
+
).round(2)
|
121
|
+
end
|
122
|
+
|
123
|
+
def pertitoneal_ktv
|
124
|
+
return if dial_24_missing
|
125
|
+
return if any_are_nil_or_zero?(
|
126
|
+
serum_urea,
|
127
|
+
dialysate_urea,
|
128
|
+
dial_24_vol_out,
|
129
|
+
total_body_water
|
130
|
+
)
|
131
|
+
|
132
|
+
(
|
133
|
+
(dialysate_urea / serum_urea * dial_24_vol_out / 1000.0 * 7.0) / total_body_water.to_f
|
134
|
+
).round(2)
|
135
|
+
end
|
136
|
+
|
137
|
+
def total_ktv
|
138
|
+
return if any_are_nil_or_zero?(renal_ktv, pertitoneal_ktv)
|
139
|
+
|
140
|
+
(renal_ktv + pertitoneal_ktv).round(2)
|
141
|
+
end
|
142
|
+
|
143
|
+
def body_surface_area
|
144
|
+
Clinics::BodySurfaceArea.calculate(weight: weight, height: height)
|
145
|
+
end
|
146
|
+
|
147
|
+
def total_body_water
|
148
|
+
Clinics::TotalBodyWater.calculate(height: height, weight: weight, age: age, sex: sex)
|
149
|
+
end
|
150
|
+
|
151
|
+
private
|
152
|
+
|
153
|
+
def any_are_nil_or_zero?(*attrs)
|
154
|
+
Array(attrs).map(&:to_f).any?(&:zero?)
|
155
|
+
end
|
156
|
+
end
|
157
|
+
end
|
158
|
+
end
|
159
|
+
# rubocop:enable Metrics/ClassLength
|
@@ -0,0 +1,76 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pd"
|
4
|
+
|
5
|
+
module Renalware
|
6
|
+
module PD
|
7
|
+
# Important to understand is that urine measurements related to renal calculations and
|
8
|
+
# dialysate measurements relate to peritoneal calculations
|
9
|
+
class AdequacyResult < ApplicationRecord
|
10
|
+
include PatientScope
|
11
|
+
include Accountable
|
12
|
+
include PatientsRansackHelper
|
13
|
+
acts_as_paranoid
|
14
|
+
|
15
|
+
belongs_to :patient, class_name: "Renalware::PD::Patient", touch: true
|
16
|
+
scope :ordered, -> { order(performed_on: :desc, created_at: :desc) }
|
17
|
+
validates :performed_on, presence: true
|
18
|
+
validates :dial_24_vol_in,
|
19
|
+
numericality: { greater_than_or_equal_to: 1005, less_than_or_equal_to: 35000 },
|
20
|
+
allow_nil: true
|
21
|
+
validates :dial_24_vol_out,
|
22
|
+
numericality: { greater_than_or_equal_to: 500, less_than_or_equal_to: 45000 },
|
23
|
+
allow_nil: true
|
24
|
+
validates :urine_24_vol,
|
25
|
+
numericality: { greater_than_or_equal_to: 0, less_than_or_equal_to: 6000 },
|
26
|
+
allow_nil: true
|
27
|
+
validates :height, numericality: { allow_blank: true }
|
28
|
+
validates :weight, numericality: { allow_blank: true }
|
29
|
+
|
30
|
+
before_save :derive_calculated_attributes
|
31
|
+
before_save :update_completed
|
32
|
+
|
33
|
+
private
|
34
|
+
|
35
|
+
def derive_calculated_attributes
|
36
|
+
derived_attrs = AdequacyCalculatedAttributes.new(
|
37
|
+
adequacy: self,
|
38
|
+
age: patient.age,
|
39
|
+
sex: patient.sex
|
40
|
+
).to_h
|
41
|
+
assign_attributes(derived_attrs)
|
42
|
+
end
|
43
|
+
|
44
|
+
# Derive the #complete attribute based on the presence of certain calculated fields.
|
45
|
+
# We may be complete even if some calculated fields are null, provided an appropriate
|
46
|
+
# urine-missing/dialysate-missing boolean is set. These indicate that the patient's urine
|
47
|
+
# or dialysate samples where missing so the renal calculations (relating to urine) or the
|
48
|
+
# peritioneal calculations (relating to dialysate) could not happen.
|
49
|
+
def update_completed
|
50
|
+
self.complete =
|
51
|
+
all_calculations_present? ||
|
52
|
+
urine_missing_but_peritoneal_calculation_present? ||
|
53
|
+
dialysate_missing_but_renal_calculation_present?
|
54
|
+
end
|
55
|
+
|
56
|
+
def all_calculations_present?
|
57
|
+
[
|
58
|
+
total_creatinine_clearance,
|
59
|
+
pertitoneal_creatinine_clearance,
|
60
|
+
renal_creatinine_clearance,
|
61
|
+
total_ktv,
|
62
|
+
pertitoneal_ktv,
|
63
|
+
renal_ktv
|
64
|
+
].all?(&:present?)
|
65
|
+
end
|
66
|
+
|
67
|
+
def urine_missing_but_peritoneal_calculation_present?
|
68
|
+
urine_24_missing? && [pertitoneal_creatinine_clearance, pertitoneal_ktv].all?(&:present?)
|
69
|
+
end
|
70
|
+
|
71
|
+
def dialysate_missing_but_renal_calculation_present?
|
72
|
+
dial_24_missing? && [renal_creatinine_clearance, renal_ktv].all?(&:present?)
|
73
|
+
end
|
74
|
+
end
|
75
|
+
end
|
76
|
+
end
|
@@ -6,15 +6,19 @@ module Renalware
|
|
6
6
|
module PD
|
7
7
|
class Patient < ActiveType::Record[Renalware::Patient]
|
8
8
|
has_many :pet_adequacy_results, dependent: :restrict_with_exception
|
9
|
+
has_many :pet_results, dependent: :restrict_with_exception
|
10
|
+
has_many :adequacy_results, dependent: :restrict_with_exception
|
9
11
|
|
10
12
|
def treated?
|
11
13
|
modality_descriptions.exists?(type: "Renalware::PD::ModalityDescription")
|
12
14
|
end
|
13
15
|
|
16
|
+
# rubocop:disable Naming/PredicateName
|
14
17
|
def has_ever_been_on_pd?
|
15
18
|
@has_ever_been_on_pd ||=
|
16
19
|
modality_descriptions.exists?(type: "Renalware::PD::ModalityDescription")
|
17
20
|
end
|
21
|
+
# rubocop:enable Naming/PredicateName
|
18
22
|
end
|
19
23
|
end
|
20
24
|
end
|
@@ -0,0 +1,17 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pd"
|
4
|
+
|
5
|
+
module Renalware
|
6
|
+
module PD
|
7
|
+
class PETDextroseConcentration < ApplicationRecord
|
8
|
+
validates :name, presence: true, uniqueness: true
|
9
|
+
|
10
|
+
scope :ordered, -> { order(position: :asc) }
|
11
|
+
|
12
|
+
def to_s
|
13
|
+
name
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
17
|
+
end
|
@@ -0,0 +1,92 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pd"
|
4
|
+
#
|
5
|
+
# Captures data used for PET (Peritoneal Equilibration Test) and Adequacy.
|
6
|
+
#
|
7
|
+
module Renalware
|
8
|
+
module PD
|
9
|
+
class PETResult < ApplicationRecord
|
10
|
+
include PatientScope
|
11
|
+
include Accountable
|
12
|
+
include PatientsRansackHelper
|
13
|
+
extend Enumerize
|
14
|
+
acts_as_paranoid
|
15
|
+
|
16
|
+
belongs_to :patient, class_name: "Renalware::PD::Patient", touch: true
|
17
|
+
scope :ordered, -> { order(performed_on: :desc, created_at: :desc) }
|
18
|
+
before_save :derive_calculated_attributes
|
19
|
+
belongs_to :dextrose_concentration, class_name: "PETDextroseConcentration"
|
20
|
+
belongs_to :overnight_dextrose_concentration, class_name: "PETDextroseConcentration"
|
21
|
+
|
22
|
+
def derive_calculated_attributes
|
23
|
+
self.d_pcr = calculated_d_pcr
|
24
|
+
self.net_uf = calculated_net_uf
|
25
|
+
self.complete = d_pcr.present? && net_uf.present?
|
26
|
+
end
|
27
|
+
|
28
|
+
def calculated_d_pcr
|
29
|
+
return if sample_4hr_creatinine.to_f == 0.0
|
30
|
+
return if serum_creatinine.to_f == 0.0
|
31
|
+
|
32
|
+
(sample_4hr_creatinine / serum_creatinine).round(2)
|
33
|
+
end
|
34
|
+
|
35
|
+
def calculated_net_uf
|
36
|
+
return if volume_in.to_i.zero?
|
37
|
+
return if volume_out.to_i.zero?
|
38
|
+
|
39
|
+
volume_out - volume_in
|
40
|
+
end
|
41
|
+
|
42
|
+
enumerize :test_type, in: %i(fast full), predicate: true
|
43
|
+
|
44
|
+
validates :performed_on, presence: true
|
45
|
+
validates :test_type, presence: true
|
46
|
+
validates :volume_in,
|
47
|
+
numericality: { greater_than_or_equal_to: 1000, less_than_or_equal_to: 3000 },
|
48
|
+
allow_nil: true
|
49
|
+
validates :volume_out,
|
50
|
+
numericality: { greater_than_or_equal_to: 500, less_than_or_equal_to: 4000 },
|
51
|
+
allow_nil: true
|
52
|
+
validates :infusion_time,
|
53
|
+
numericality: { greater_than_or_equal_to: 0, less_than_or_equal_to: 30 },
|
54
|
+
allow_nil: true
|
55
|
+
validates :drain_time,
|
56
|
+
numericality: { greater_than_or_equal_to: 0, less_than_or_equal_to: 45 },
|
57
|
+
allow_nil: true
|
58
|
+
validates :overnight_volume_in,
|
59
|
+
numericality: { greater_than_or_equal_to: 1000, less_than_or_equal_to: 3000 },
|
60
|
+
allow_nil: true
|
61
|
+
validates :overnight_volume_out,
|
62
|
+
numericality: { greater_than_or_equal_to: 500, less_than_or_equal_to: 4000 },
|
63
|
+
allow_nil: true
|
64
|
+
validates :overnight_dwell_time,
|
65
|
+
numericality: { greater_than_or_equal_to: 180, less_than_or_equal_to: 720 },
|
66
|
+
allow_nil: true
|
67
|
+
|
68
|
+
# This map is currently for documentation purposes but may be useful when exporting
|
69
|
+
# National Renal Database data
|
70
|
+
# NRD_MAP = {
|
71
|
+
# pet_date: 163,
|
72
|
+
# dialysate_creat_plasma_ratio: 164,
|
73
|
+
# dialysate_glucose_start: 166,
|
74
|
+
# dialysate_glucose_end: 167,
|
75
|
+
# adequacy_date: [169,171,173],
|
76
|
+
# ktv_total: 168,
|
77
|
+
# ktv_dialysate: 170,
|
78
|
+
# ktv_rrf: 19,
|
79
|
+
# crcl_total: 172,
|
80
|
+
# crcl_rrf: 174,
|
81
|
+
# daily_urine: 21,
|
82
|
+
# date_rff: [20,175,22,18,16],
|
83
|
+
# creat_value: 176,
|
84
|
+
# dialysate_effluent_volume: 165,
|
85
|
+
# date_creat_clearance: 173,
|
86
|
+
# date_creat_value: 177,
|
87
|
+
# urine_urea_conc: 15,
|
88
|
+
# urine_creat_conc: 17
|
89
|
+
# }.freeze
|
90
|
+
end
|
91
|
+
end
|
92
|
+
end
|