renalware-core 2.0.149 → 2.0.151
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- checksums.yaml +4 -4
- data/README.md +23 -2
- data/app/assets/config/renalware/core/manifest.js +1 -0
- data/app/assets/images/renalware/icons/align-justify.svg +3 -0
- data/app/assets/images/renalware/icons/bar-chart.svg +1 -0
- data/app/assets/images/renalware/icons/chart-bar.svg +1 -0
- data/app/assets/images/renalware/icons/chart.svg +3 -0
- data/app/assets/images/renalware/icons/list-bullet.svg +1 -0
- data/app/assets/images/renalware/icons/list.svg +8 -0
- data/app/assets/javascripts/renalware/README.md +25 -1
- data/app/assets/javascripts/renalware/components/dialogs.js.erb +3 -1
- data/app/assets/javascripts/renalware/components/hd.js +2 -2
- data/app/assets/javascripts/renalware/components/letters.js +1 -1
- data/app/assets/javascripts/renalware/components/masonry.run.js +2 -2
- data/app/assets/javascripts/renalware/components/patient_menu.js +1 -1
- data/app/assets/javascripts/renalware/components/toggler.js +1 -1
- data/app/assets/javascripts/renalware/rollup_compiled.css +87457 -0
- data/app/assets/javascripts/renalware/rollup_compiled.js +3148 -3
- data/app/assets/stylesheets/renalware/core.scss +1 -0
- data/app/assets/stylesheets/renalware/modules/_hd.scss +8 -4
- data/app/assets/stylesheets/renalware/modules/_pathology.scss +8 -1
- data/app/assets/stylesheets/renalware/modules/_pd.scss +35 -0
- data/app/assets/stylesheets/renalware/partials/_charting.scss +17 -0
- data/app/assets/stylesheets/renalware/partials/_forms.scss +5 -1
- data/app/assets/stylesheets/renalware/partials/_simple_form.scss +8 -0
- data/app/assets/stylesheets/renalware/partials/_utilities.scss +12 -0
- data/app/assets/stylesheets/tailwind/tailwind.css +3 -0
- data/app/components/renalware/application_component.rb +2 -1
- data/app/components/renalware/events/{biopsies_component.html.slim → event_list_component.html.slim} +5 -4
- data/app/components/renalware/events/event_list_component.rb +77 -0
- data/app/components/renalware/hd/administer_prescription_dropdown_component.rb +1 -5
- data/app/components/renalware/hd/prescription_last_administration_component.html.slim +0 -1
- data/app/components/renalware/hd/prescription_last_administration_component.rb +8 -7
- data/app/components/renalware/letters/unread_electronic_ccs_component.rb +1 -0
- data/app/components/renalware/pathology/chart_component.html.slim +5 -0
- data/app/components/renalware/pathology/chart_component.rb +40 -0
- data/app/components/renalware/pathology/sparkline_component.html.slim +15 -0
- data/app/components/renalware/pathology/sparkline_component.rb +135 -0
- data/app/components/renalware/patients/side_menu_component.rb +2 -11
- data/app/components/renalware/pd/adequacy_results_component.html.slim +9 -0
- data/app/components/renalware/pd/adequacy_results_component.rb +39 -0
- data/app/components/renalware/pd/pet_results_component.html.slim +37 -0
- data/app/components/renalware/pd/pet_results_component.rb +84 -0
- data/app/{views/renalware/surveys/_eq5d_summary_part.html.slim → components/renalware/surveys/eq5d_component.html.slim} +5 -5
- data/app/{models/renalware/surveys/eq5d_summary_part.rb → components/renalware/surveys/eq5d_component.rb} +7 -5
- data/app/{views/renalware/surveys/_pos_s_summary_part.html.slim → components/renalware/surveys/pos_s_component.html.slim} +6 -9
- data/app/{models/renalware/surveys/pos_s_summary_part.rb → components/renalware/surveys/pos_s_component.rb} +9 -5
- data/app/components/renalware/system/admin_menu_component.rb +2 -2
- data/app/components/renalware/system/article_component.html.slim +3 -0
- data/app/components/renalware/system/article_component.rb +9 -0
- data/app/controllers/renalware/admissions/consults_controller.rb +1 -1
- data/app/controllers/renalware/concerns/pdf_renderable.rb +1 -1
- data/app/controllers/renalware/hd/scheduling/diaries_controller.rb +1 -1
- data/app/controllers/renalware/medications/prescriptions_controller.rb +1 -1
- data/app/controllers/renalware/pathology/charts_controller.rb +21 -0
- data/app/controllers/renalware/pathology/current_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/historical_observation_results_controller.rb +1 -1
- data/app/controllers/renalware/pathology/nearest_observation_results_controller.rb +52 -0
- data/app/controllers/renalware/pathology/observation_requests_controller.rb +1 -1
- data/app/controllers/renalware/pathology/observations_controller.rb +26 -2
- data/app/controllers/renalware/pathology/requests/requests_controller.rb +7 -5
- data/app/controllers/renalware/pd/adequacy_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/adequacy_results_controller.rb +98 -0
- data/app/controllers/renalware/pd/pet_completions_controller.rb +18 -0
- data/app/controllers/renalware/pd/pet_results_controller.rb +122 -0
- data/app/controllers/renalware/pd/unified_pet_adequacies_controller.rb +102 -0
- data/app/controllers/renalware/renal/aki_alerts_controller.rb +1 -1
- data/app/controllers/renalware/renal/registry_preflight_checks_controller.rb +55 -19
- data/app/documents/renalware/age.rb +3 -1
- data/app/helpers/renalware/application_helper.rb +7 -7
- data/app/helpers/renalware/article_helper.rb +3 -3
- data/app/helpers/renalware/boolean_helper.rb +15 -0
- data/app/helpers/renalware/clipboard_helper.rb +2 -3
- data/app/helpers/renalware/dashboards_helper.rb +2 -2
- data/app/helpers/renalware/definition_list_helper.rb +3 -3
- data/app/helpers/renalware/devise_helper.rb +1 -1
- data/app/helpers/renalware/form_helper.rb +2 -2
- data/app/helpers/renalware/letters_helper.rb +1 -1
- data/app/helpers/renalware/link_helper.rb +1 -1
- data/app/helpers/renalware/mdm_helper.rb +1 -0
- data/app/helpers/renalware/navigation_helper.rb +1 -1
- data/app/helpers/renalware/patient_helper.rb +2 -2
- data/app/helpers/renalware/snippets_helper.rb +9 -10
- data/app/helpers/renalware/toggle_helper.rb +6 -6
- data/app/helpers/renalware/tooltip_helper.rb +14 -16
- data/app/inputs/clock_picker_input.rb +3 -3
- data/app/inputs/date_picker_input.rb +3 -3
- data/app/inputs/simple_time_input.rb +3 -3
- data/app/inputs/trix_editor_input.rb +2 -0
- data/app/javascript/renalware/controllers/blas_controller.js +37 -0
- data/app/javascript/renalware/controllers/modal_controller.js +137 -0
- data/app/javascript/renalware/controllers/pathology/sparklines_controller.js +206 -0
- data/app/javascript/renalware/controllers/pd/pet_charts_controller.js +169 -0
- data/app/javascript/renalware/controllers/session_controller.js +1 -1
- data/app/javascript/renalware/controllers/simple_toggle_controller.js +17 -0
- data/app/javascript/renalware/controllers/tabs_controller.js +43 -0
- data/app/javascript/renalware/controllers/toggle_controller.js +2 -2
- data/app/javascript/renalware/index.js +10 -0
- data/app/models/concerns/renalware/patients_ransack_helper.rb +2 -0
- data/app/models/renalware/clinics/body_surface_area.rb +40 -0
- data/app/models/renalware/clinics/clinic_visit.rb +21 -1
- data/app/models/renalware/clinics/total_body_water.rb +63 -0
- data/app/models/renalware/events/advanced_care_plan.rb +24 -0
- data/app/models/renalware/events/clinical_frailty_score.rb +24 -0
- data/app/models/renalware/feeds/hl7_message.rb +1 -0
- data/app/models/renalware/hd/prescription_last_administration_query.rb +4 -0
- data/app/models/renalware/hd/session_forms/pdf_renderer.rb +1 -1
- data/app/models/renalware/hd/sessions/auditable_session_collection.rb +4 -1
- data/app/models/renalware/letters/html_renderer.rb +1 -1
- data/app/models/renalware/letters/printing/duplex_interleaved_pdf_renderer.rb +1 -1
- data/app/models/renalware/letters/recipient_address_pdf_renderer.rb +1 -1
- data/app/models/renalware/pathology/nearest_observations_query.rb +44 -0
- data/app/models/renalware/pathology/observations_jsonb_serializer.rb +1 -1
- data/app/models/renalware/patient.rb +16 -1
- data/app/models/renalware/patients/alert.rb +1 -0
- data/app/models/renalware/patients/ingestion/update_master_patient_index.rb +1 -0
- data/app/models/renalware/patients/patient_hospital_identifiers.rb +1 -0
- data/app/models/renalware/pd.rb +2 -0
- data/app/models/renalware/pd/adequacy_calculated_attributes.rb +159 -0
- data/app/models/renalware/pd/adequacy_result.rb +76 -0
- data/app/models/renalware/pd/apd/glucose_calculator.rb +1 -0
- data/app/models/renalware/pd/patient.rb +4 -0
- data/app/models/renalware/pd/pet_dextrose_concentration.rb +17 -0
- data/app/models/renalware/pd/pet_result.rb +92 -0
- data/app/models/renalware/pd/unified_pet_adequacy_form.rb +46 -0
- data/app/models/renalware/renal/registry/preflight_checks/missing_esrf_query.rb +50 -0
- data/app/models/renalware/snippets/duplicate_snippet_title_generator.rb +1 -0
- data/app/models/renalware/transplants/recipient_workup_builder.rb +1 -0
- data/app/models/renalware/transplants/registration_status.rb +1 -1
- data/app/models/renalware/ukrdc/outgoing/rendering/patient_number.rb +1 -1
- data/app/models/renalware/user.rb +10 -0
- data/app/pdfs/renalware/events/event_pdf.rb +1 -0
- data/app/policies/renalware/events/advanced_care_plan_policy.rb +10 -0
- data/app/policies/renalware/events/clinical_frailty_score_policy.rb +10 -0
- data/app/policies/renalware/pd/adequacy_result_policy.rb +15 -0
- data/app/policies/renalware/pd/pet_result_policy.rb +15 -0
- data/app/policies/renalware/renal/registry_preflight_check_policy.rb +4 -0
- data/app/presenters/renalware/clinical/profile_presenter.rb +1 -0
- data/app/presenters/renalware/hd/dashboard_presenter.rb +1 -0
- data/app/presenters/renalware/hd/profile_presenter.rb +1 -0
- data/app/presenters/renalware/hd/scheduling/diary_presenter.rb +1 -0
- data/app/presenters/renalware/hd/session_presenter.rb +1 -0
- data/app/presenters/renalware/hd/unmet_preferences_presenter.rb +1 -1
- data/app/presenters/renalware/mdm_patients_presenter.rb +1 -0
- data/app/presenters/renalware/pd/dashboard_presenter.rb +10 -2
- data/app/presenters/renalware/ukrdc/patient_presenter.rb +1 -0
- data/app/presenters/renalware/user_session_presenter.rb +1 -1
- data/app/validators/renalware/patients/nhs_number_validator.rb +88 -0
- data/app/values/renalware/address.rb +1 -0
- data/app/views/renalware/accesses/assessments/show.html.slim +1 -1
- data/app/views/renalware/accesses/procedures/show.html.slim +1 -1
- data/app/views/renalware/accesses/profiles/show.html.slim +1 -1
- data/app/views/renalware/admin/cache/show.html.slim +36 -0
- data/app/views/renalware/admin/playgrounds/show.html.slim +3 -0
- data/app/views/renalware/clinical/profiles/show.html.slim +11 -1
- data/app/views/renalware/clinics/clinic_visits/_table.html.slim +2 -0
- data/app/views/renalware/clinics/clinic_visits/_table_row.html.slim +2 -0
- data/app/views/renalware/dashboard/letters/_letter.html.slim +1 -1
- data/app/views/renalware/directory/people/show.html.slim +1 -1
- data/app/views/renalware/events/advanced_care_plans/_cell.html.slim +2 -0
- data/app/views/renalware/events/advanced_care_plans/_inputs.html.slim +4 -0
- data/app/views/renalware/events/advanced_care_plans/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/clinical_frailty_score/_cell.html.slim +2 -0
- data/app/views/renalware/events/clinical_frailty_score/_inputs.html.slim +4 -0
- data/app/views/renalware/events/clinical_frailty_score/_toggled_cell.html.slim +8 -0
- data/app/views/renalware/events/events/_table.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/_show.html.slim +1 -1
- data/app/views/renalware/hd/current_profile/show.html.slim +1 -1
- data/app/views/renalware/hd/prescription_administrations/_form.html.slim +2 -0
- data/app/views/renalware/hd/sessions/_show.html.slim +1 -1
- data/app/views/renalware/hd/witnesses/_form.html.slim +2 -0
- data/app/views/renalware/letters/electronic_receipts/_table.html.slim +1 -1
- data/app/views/renalware/low_clearance/dashboards/show.html.slim +10 -0
- data/app/views/renalware/mdm/_pathology.html.slim +0 -1
- data/app/views/renalware/mdm/show.html.slim +1 -1
- data/app/views/renalware/navigation/_menu.html.slim +1 -0
- data/app/views/renalware/navigation/_pd.html.slim +5 -0
- data/app/views/renalware/pathology/charts/show.html.slim +11 -0
- data/app/views/renalware/pathology/current_observation_results/index.html.slim +6 -0
- data/app/views/renalware/pathology/historical_observation_results/_table.html.slim +4 -3
- data/app/views/renalware/pathology/historical_observation_results/index.html.slim +1 -1
- data/app/views/renalware/pathology/observations/_diff.html.slim +1 -1
- data/app/views/renalware/patients/patients/show.html.slim +1 -1
- data/app/views/renalware/pd/_exit_site_infections.html.slim +4 -0
- data/app/views/renalware/pd/_peritonitis_episodes.html.slim +3 -0
- data/app/views/renalware/pd/adequacy_completions/_filters.html.slim +19 -0
- data/app/views/renalware/pd/adequacy_completions/index.html.slim +4 -0
- data/app/views/renalware/pd/adequacy_results/_form_fields.html.slim +9 -0
- data/app/views/renalware/pd/adequacy_results/_table.html.slim +72 -0
- data/app/views/renalware/pd/adequacy_results/edit.html.slim +89 -0
- data/app/views/renalware/pd/adequacy_results/index.js.erb +1 -0
- data/app/views/renalware/pd/adequacy_results/new.html.slim +8 -0
- data/app/views/renalware/pd/dashboards/show.html.slim +3 -0
- data/app/views/renalware/pd/dashboards/show/_page_actions.html.slim +14 -0
- data/app/views/renalware/pd/pet_completions/_filters.html.slim +24 -0
- data/app/views/renalware/pd/pet_completions/index.html.slim +4 -0
- data/app/views/renalware/pd/pet_results/_form_fields.html.slim +12 -0
- data/app/views/renalware/pd/pet_results/_pathology_results.html.slim +36 -0
- data/app/views/renalware/pd/pet_results/_table.html.slim +62 -0
- data/app/views/renalware/pd/pet_results/edit.html.slim +35 -0
- data/app/views/renalware/pd/pet_results/index.js.erb +1 -0
- data/app/views/renalware/pd/pet_results/new.html.slim +8 -0
- data/app/views/renalware/pd/unified_pet_adequacies/_form.html.slim +22 -0
- data/app/views/renalware/pd/unified_pet_adequacies/new.html.slim +2 -0
- data/app/views/renalware/renal/profiles/show.html.slim +1 -1
- data/app/views/renalware/renal/registry_preflight_checks/_filters.html.slim +5 -3
- data/app/views/renalware/renal/registry_preflight_checks/_navigation.html.slim +1 -0
- data/app/views/renalware/renal/registry_preflight_checks/deaths.html.slim +2 -1
- data/app/views/renalware/renal/registry_preflight_checks/missing_esrf.html.slim +12 -0
- data/app/views/renalware/renal/registry_preflight_checks/patients.html.slim +1 -2
- data/app/views/renalware/surveys/dashboards/show.html.slim +2 -2
- data/app/views/renalware/transplants/donor_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/mdm/_bottom.html.slim +3 -1
- data/app/views/renalware/transplants/recipient_followups/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_operations/show.html.slim +1 -1
- data/app/views/renalware/transplants/recipient_workups/show.html.slim +1 -1
- data/app/views/renalware/transplants/registrations/show.html.slim +1 -1
- data/config/initializers/inflections.rb +8 -0
- data/config/initializers/wicked_pdf.rb +12 -0
- data/config/locales/en-GB.yml +1 -1
- data/config/locales/renalware/events/advanced_care_plan.en.yml +12 -0
- data/config/locales/renalware/events/biopsy.en.yml +2 -0
- data/config/locales/renalware/events/clinical_frailty_score.en.yml +16 -0
- data/config/locales/renalware/events/clinical_frailty_score_component.en.yml +8 -0
- data/config/locales/renalware/nhs_number.en.yml +6 -0
- data/config/locales/renalware/pd/adequacy_result.en.yml +9 -0
- data/config/locales/renalware/pd/dashboard.en.yml +3 -0
- data/config/locales/renalware/pd/pet_result.en.yml +23 -0
- data/config/locales/renalware/renal/registry.en.yml +1 -0
- data/config/routes/pathology.rb +6 -0
- data/config/routes/pd.rb +5 -0
- data/config/routes/renal.rb +1 -0
- data/db/functions/generate_secure_id_v01.sql +1 -1
- data/db/migrate/20200226145010_add_unique_indexes.rb +46 -0
- data/db/migrate/20200421082715_add_body_surface_area_to_clinic_visits.rb +8 -0
- data/db/migrate/20200421132911_create_pd_pet_dextrose_concentrations.rb +13 -0
- data/db/migrate/20200421143546_create_pet_results.rb +66 -0
- data/db/migrate/20200427123229_create_adequacy_results.rb +54 -0
- data/db/migrate/20200616115709_add_height_weight_to_pd_adequacy_results.rb +8 -0
- data/db/migrate/20200618144228_add_feature_flags_to_users.rb +14 -0
- data/db/seeds/default/events/event_types.csv +2 -0
- data/lib/renalware/engine.rb +4 -2
- data/lib/renalware/version_number.rb +11 -0
- data/lib/tasks/renalware.rake +7 -1
- data/spec/factories/accesses/profiles.rb +1 -0
- data/spec/factories/events/events_types.rb +12 -0
- data/spec/factories/patients/patients.rb +22 -1
- data/spec/factories/pd/adequacy_results.rb +16 -0
- data/spec/factories/pd/pet_results.rb +9 -0
- metadata +115 -25
- data/app/components/renalware/events/biopsies_component.rb +0 -20
- data/lib/renalware/version.rb +0 -5
@@ -11,7 +11,7 @@ module Renalware
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def index
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observation_requests = find_observation_requests
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render locals: {
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observation_requests: observation_requests.result
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observation_requests: observation_requests.result.page(page).per(per_page),
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search: observation_requests,
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obr_filter_options: obr_filter_options,
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patient: @patient
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include Renalware::Concerns::Pageable
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before_action :load_patient
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# Observation history for a particular OBX.
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# - HTML version is rendered from patient pathology under Investigations when you
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# select a Request and see its Observations and click on the Code.
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# - JSON version used in graphs
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# rubocop:disable Metrics/MethodLength
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def index
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description = find_description
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observations = find_observations_for_description(description)
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-
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respond_to do |format|
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format.html do
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render locals: {
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patient: @patient,
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observations: observations,
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description: description
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}
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end
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format.json do
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render json: {
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code: description.code,
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name: description.name,
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results: observations.pluck(:observed_at, :result).map { |arr|
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[arr.first.to_date, arr.last&.to_f]
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}
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}
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end
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end
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end
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# rubocop:enable Metrics/MethodLength
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private
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@@ -22,7 +45,8 @@ module Renalware
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end
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def find_observations_for_description(description)
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@patient
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@patient
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.observations
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.page(page)
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.includes(:request)
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.for_description(description)
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Request.find(params[:id])
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)
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authorize request
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-
|
27
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+
render_with_wicked_pdf(
|
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|
pdf: "show",
|
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29
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page_size: "A4",
|
30
30
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layout: "renalware/layouts/pdf",
|
@@ -52,7 +52,7 @@ module Renalware
|
|
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52
|
def create
|
53
53
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requests.each(&:print_form)
|
54
54
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|
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-
|
55
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+
render_with_wicked_pdf(
|
56
56
|
pdf: "create",
|
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57
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page_size: "A4",
|
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layout: "renalware/layouts/pdf",
|
@@ -81,9 +81,11 @@ module Renalware
|
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81
81
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end
|
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|
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|
def requests
|
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-
|
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-
|
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-
|
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+
@requests ||= begin
|
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+
RequestPresenter.present(
|
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+
Requests::RequestsFactory.new(@patients, request_params).build
|
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+
)
|
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+
end
|
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end
|
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90
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89
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|
def request_params
|
@@ -0,0 +1,18 @@
|
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+
# frozen_string_literal: true
|
2
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+
|
3
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+
require_dependency "renalware/pd"
|
4
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+
|
5
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+
module Renalware
|
6
|
+
module PD
|
7
|
+
class AdequacyCompletionsController < BaseController
|
8
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+
include Pagy::Backend
|
9
|
+
|
10
|
+
def index
|
11
|
+
query = AdequacyResult.joins(:patient).order(performed_on: :desc).ransack(params[:q])
|
12
|
+
pagy, results = pagy(query.result)
|
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+
authorize results
|
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+
render locals: { pagination: pagy, results: results, query: query }
|
15
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+
end
|
16
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+
end
|
17
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+
end
|
18
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+
end
|
@@ -0,0 +1,98 @@
|
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# frozen_string_literal: true
|
2
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+
|
3
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+
require_dependency "renalware/pd"
|
4
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+
|
5
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+
module Renalware
|
6
|
+
module PD
|
7
|
+
class AdequacyResultsController < PD::BaseController
|
8
|
+
def new
|
9
|
+
adequacy = AdequacyResult.new(patient: patient, performed_on: Date.current)
|
10
|
+
authorize adequacy
|
11
|
+
render locals: { adequacy: adequacy }
|
12
|
+
end
|
13
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+
|
14
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+
def create
|
15
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+
adequacy = AdequacyResult.new(result_params)
|
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+
authorize adequacy
|
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+
|
18
|
+
if adequacy.save_by(current_user)
|
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+
redirect_to patient_pd_dashboard_path(patient), notice: success_msg_for("Adequacy result")
|
20
|
+
else
|
21
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+
render :new, locals: { adequacy: adequacy }
|
22
|
+
end
|
23
|
+
end
|
24
|
+
|
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|
+
def edit
|
26
|
+
adequacy = find_and_authorize_result
|
27
|
+
# adequacy.derive_calculated_attributes
|
28
|
+
render locals: { adequacy: adequacy }
|
29
|
+
end
|
30
|
+
|
31
|
+
def update
|
32
|
+
result = find_and_authorize_result
|
33
|
+
if result.update_by(current_user, result_params)
|
34
|
+
redirect_to patient_pd_dashboard_path(patient), notice: success_msg_for("Result")
|
35
|
+
else
|
36
|
+
render_edit(result)
|
37
|
+
end
|
38
|
+
end
|
39
|
+
|
40
|
+
def destroy
|
41
|
+
result = find_and_authorize_result
|
42
|
+
result.destroy!
|
43
|
+
redirect_to patient_pd_dashboard_path(patient), notice: success_msg_for("Result")
|
44
|
+
end
|
45
|
+
|
46
|
+
def index
|
47
|
+
respond_to do |format|
|
48
|
+
format.js do
|
49
|
+
results = patient.adequacy_results.ordered
|
50
|
+
authorize results
|
51
|
+
render locals: { results: results }
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
55
|
+
|
56
|
+
private
|
57
|
+
|
58
|
+
def find_and_authorize_result
|
59
|
+
PD::AdequacyResult.for_patient(patient).find(params[:id]).tap do |adequacy|
|
60
|
+
authorize adequacy
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
def render_edit(adequacy)
|
65
|
+
render :edit, locals: { adequacy: adequacy }
|
66
|
+
end
|
67
|
+
|
68
|
+
# rubocop:disable Metrics/MethodLength
|
69
|
+
def result_params
|
70
|
+
params
|
71
|
+
.require(:pd_adequacy_result)
|
72
|
+
.permit(
|
73
|
+
:patient_id,
|
74
|
+
:performed_on,
|
75
|
+
:height,
|
76
|
+
:weight,
|
77
|
+
:dial_24_vol_in,
|
78
|
+
:dial_24_vol_out,
|
79
|
+
:dial_24_missing,
|
80
|
+
:urine_24_vol,
|
81
|
+
:urine_24_missing,
|
82
|
+
:dialysate_urea,
|
83
|
+
:dialysate_creatinine,
|
84
|
+
:dialysate_glu,
|
85
|
+
:dialysate_na,
|
86
|
+
:dialysate_protein,
|
87
|
+
:urine_urea,
|
88
|
+
:urine_creatinine,
|
89
|
+
:urine_na,
|
90
|
+
:urine_k,
|
91
|
+
:serum_urea,
|
92
|
+
:serum_creatinine
|
93
|
+
)
|
94
|
+
end
|
95
|
+
# rubocop:enable Metrics/MethodLength
|
96
|
+
end
|
97
|
+
end
|
98
|
+
end
|
@@ -0,0 +1,18 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pd"
|
4
|
+
|
5
|
+
module Renalware
|
6
|
+
module PD
|
7
|
+
class PETCompletionsController < BaseController
|
8
|
+
include Pagy::Backend
|
9
|
+
|
10
|
+
def index
|
11
|
+
query = PETResult.joins(:patient).order(performed_on: :desc).ransack(params[:q])
|
12
|
+
pagy, results = pagy(query.result)
|
13
|
+
authorize results
|
14
|
+
render locals: { pagination: pagy, results: results, query: query }
|
15
|
+
end
|
16
|
+
end
|
17
|
+
end
|
18
|
+
end
|
@@ -0,0 +1,122 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pd"
|
4
|
+
|
5
|
+
module Renalware
|
6
|
+
module PD
|
7
|
+
class PETResultsController < BaseController
|
8
|
+
def new
|
9
|
+
pet = PETResult.new(
|
10
|
+
patient: patient,
|
11
|
+
performed_on: Date.current
|
12
|
+
)
|
13
|
+
authorize pet
|
14
|
+
render_new(pet)
|
15
|
+
end
|
16
|
+
|
17
|
+
def create
|
18
|
+
pet = PETResult.new(pet_result_params)
|
19
|
+
authorize pet
|
20
|
+
|
21
|
+
if pet.save_by(current_user)
|
22
|
+
redirect_to patient_pd_dashboard_path(patient), notice: success_msg_for("PET result")
|
23
|
+
else
|
24
|
+
render_new(pet)
|
25
|
+
end
|
26
|
+
end
|
27
|
+
|
28
|
+
def index
|
29
|
+
respond_to do |format|
|
30
|
+
format.json do # Graphing data
|
31
|
+
authorize PETResult, :index?
|
32
|
+
render json: pet_graph_data
|
33
|
+
end
|
34
|
+
format.js do
|
35
|
+
results = patient.pet_results.ordered
|
36
|
+
authorize results
|
37
|
+
render locals: { results: results }
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
41
|
+
|
42
|
+
def edit
|
43
|
+
render locals: { pet: find_authorize_pet_result }
|
44
|
+
end
|
45
|
+
|
46
|
+
def update
|
47
|
+
pet = find_authorize_pet_result
|
48
|
+
if pet.update_by(current_user, pet_result_params)
|
49
|
+
redirect_to patient_pd_dashboard_path(patient), notice: success_msg_for("PET result")
|
50
|
+
else
|
51
|
+
render_edit(pet)
|
52
|
+
end
|
53
|
+
end
|
54
|
+
|
55
|
+
def destroy
|
56
|
+
find_authorize_pet_result.destroy!
|
57
|
+
redirect_to patient_pd_dashboard_path(patient), notice: success_msg_for("Result")
|
58
|
+
end
|
59
|
+
|
60
|
+
private
|
61
|
+
|
62
|
+
def pet_graph_data
|
63
|
+
patient
|
64
|
+
.pet_results
|
65
|
+
.where("d_pcr is not null and net_uf is not null")
|
66
|
+
.order(performed_on: :asc)
|
67
|
+
.pluck(:d_pcr, :net_uf)
|
68
|
+
end
|
69
|
+
|
70
|
+
def find_authorize_pet_result
|
71
|
+
PD::PETResult.for_patient(patient).find(params[:id]).tap do |pet|
|
72
|
+
authorize pet
|
73
|
+
end
|
74
|
+
end
|
75
|
+
|
76
|
+
def render_edit(pet)
|
77
|
+
render :edit, locals: { pet: pet }
|
78
|
+
end
|
79
|
+
|
80
|
+
def render_new(pet)
|
81
|
+
render :new, locals: { pet: pet }
|
82
|
+
end
|
83
|
+
|
84
|
+
# rubocop:disable Metrics/MethodLength
|
85
|
+
def pet_result_params
|
86
|
+
dialysate_sample_params = [0, 2, 4, 6].each_with_object([]) do |hr, arr|
|
87
|
+
arr << :"sample_#{hr}hr_time"
|
88
|
+
arr << :"sample_#{hr}hr_urea"
|
89
|
+
arr << :"sample_#{hr}hr_creatinine"
|
90
|
+
arr << :"sample_#{hr}hr_glc"
|
91
|
+
arr << :"sample_#{hr}hr_sodium"
|
92
|
+
arr << :"sample_#{hr}hr_protein"
|
93
|
+
end
|
94
|
+
|
95
|
+
params
|
96
|
+
.require(:pd_pet_result)
|
97
|
+
.permit(
|
98
|
+
:patient_id,
|
99
|
+
:performed_on,
|
100
|
+
:test_type,
|
101
|
+
:volume_in,
|
102
|
+
:volume_out,
|
103
|
+
:dextrose_concentration_id,
|
104
|
+
:infusion_time,
|
105
|
+
:drain_time,
|
106
|
+
:overnight_volume_in,
|
107
|
+
:overnight_volume_out,
|
108
|
+
:overnight_dextrose_concentration_id,
|
109
|
+
:overnight_dwell_time,
|
110
|
+
:serum_time,
|
111
|
+
:serum_urea,
|
112
|
+
:serum_creatinine,
|
113
|
+
:plasma_glc,
|
114
|
+
:serum_ab,
|
115
|
+
:serum_na,
|
116
|
+
*dialysate_sample_params
|
117
|
+
)
|
118
|
+
end
|
119
|
+
# rubocop:enable Metrics/MethodLength
|
120
|
+
end
|
121
|
+
end
|
122
|
+
end
|
@@ -0,0 +1,102 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require_dependency "renalware/pd/base_controller"
|
4
|
+
|
5
|
+
module Renalware
|
6
|
+
module PD
|
7
|
+
# PET and Adequacy are two distinct, descrete PD tests.
|
8
|
+
# The function of this unified PET + Adequacy controller is to provide the functionality for
|
9
|
+
# a user to add the data for both at the same time.
|
10
|
+
# This is because
|
11
|
+
# a) users tend to regard the tests as 'lumped-together' (even though they aren't), and
|
12
|
+
# b) both tests are often done at the same time, so a unified form saves some time and effort.
|
13
|
+
#
|
14
|
+
# Note that we never edit a unified PET + Adequacy; as they create separate rows in the db
|
15
|
+
# and are separate models, once created they are treated distinctly. This is mainly because
|
16
|
+
# the processing of the tests is quicte different.
|
17
|
+
# See pet.rb and adequacy.rb for more detail.
|
18
|
+
class UnifiedPETAdequaciesController < BaseController
|
19
|
+
include PresenterHelper
|
20
|
+
|
21
|
+
# We use an activbe model form to present a unified model api for the view
|
22
|
+
# to display and submit in the #new template.
|
23
|
+
def new
|
24
|
+
form = UnifiedPETAdequacyForm.new(
|
25
|
+
patient: patient,
|
26
|
+
pet: PETResult.new(patient: patient, performed_on: Date.current),
|
27
|
+
adequacy: AdequacyResult.new(patient: patient, performed_on: Date.current)
|
28
|
+
)
|
29
|
+
authorize Patient, :index?
|
30
|
+
render locals: { form: form }
|
31
|
+
end
|
32
|
+
|
33
|
+
def create
|
34
|
+
authorize Patient, :new?
|
35
|
+
pet = PETResult.new(pet_params)
|
36
|
+
adequacy = AdequacyResult.new(adequacy_params)
|
37
|
+
form = build_form_object(pet, adequacy)
|
38
|
+
|
39
|
+
if form.valid?
|
40
|
+
form.save_by!(current_user)
|
41
|
+
redirect_to patient_pd_dashboard_path(patient)
|
42
|
+
else
|
43
|
+
render :new, locals: { form: form }
|
44
|
+
end
|
45
|
+
end
|
46
|
+
|
47
|
+
def build_form_object(pet, adequacy)
|
48
|
+
UnifiedPETAdequacyForm.new(
|
49
|
+
patient: patient,
|
50
|
+
pet: pet,
|
51
|
+
adequacy: adequacy,
|
52
|
+
**unified_params.to_h.symbolize_keys
|
53
|
+
)
|
54
|
+
end
|
55
|
+
|
56
|
+
# rubocop:disable Metrics/MethodLength
|
57
|
+
def pet_params
|
58
|
+
params
|
59
|
+
.require(:patient_pd_unified_pet_adequacy)
|
60
|
+
.require(:pet)
|
61
|
+
.permit(
|
62
|
+
:patient_id,
|
63
|
+
:performed_on,
|
64
|
+
:test_type,
|
65
|
+
:volume_in,
|
66
|
+
:volume_out,
|
67
|
+
:dextrose_concentration_id,
|
68
|
+
:infusion_time,
|
69
|
+
:drain_time,
|
70
|
+
:overnight_volume_in,
|
71
|
+
:overnight_volume_out,
|
72
|
+
:overnight_dextrose_concentration_id,
|
73
|
+
:overnight_dwell_time
|
74
|
+
)
|
75
|
+
end
|
76
|
+
# rubocop:enable Metrics/MethodLength
|
77
|
+
|
78
|
+
def adequacy_params
|
79
|
+
params
|
80
|
+
.require(:patient_pd_unified_pet_adequacy)
|
81
|
+
.require(:adequacy)
|
82
|
+
.permit(
|
83
|
+
:patient_id,
|
84
|
+
:performed_on,
|
85
|
+
:height,
|
86
|
+
:weight,
|
87
|
+
:dial_24_vol_in,
|
88
|
+
:dial_24_vol_out,
|
89
|
+
:dial_24_missing,
|
90
|
+
:urine_24_vol,
|
91
|
+
:urine_24_missing
|
92
|
+
)
|
93
|
+
end
|
94
|
+
|
95
|
+
def unified_params
|
96
|
+
params
|
97
|
+
.require(:patient_pd_unified_pet_adequacy)
|
98
|
+
.permit(:adequacy_missing, :pet_missing)
|
99
|
+
end
|
100
|
+
end
|
101
|
+
end
|
102
|
+
end
|