renalware-core 2.0.0.pre.beta6 → 2.0.0.pre.beta7

data/spec/support/json_helpers.rb

@@ -0,0 +1,5 @@
+module JsonHelpers
+  def json_response
+    JSON.parse(response.body)
+  end
+end

data/spec/support/letters_spec_helper.rb

@@ -0,0 +1,36 @@
+module LettersSpecHelper
+  def build_letter(state: :draft, to:, patient:, **args)
+    trait = "#{state}_letter".to_sym
+    letter = build(trait, **args)
+    letter.patient = patient
+
+    letter.patient.primary_care_physician ||= build(:letter_primary_care_physician)
+
+    attributes = build_main_recipient_attributes(to)
+    letter.main_recipient = build(:letter_recipient, :main, attributes)
+
+    letter
+  end
+
+  def create_letter(**args)
+    letter = build_letter(args)
+    letter.save!
+    letter
+  end
+
+  def build_main_recipient_attributes(to)
+    case to
+    when :patient
+      { person_role: "patient" }
+    when :primary_care_physician
+      { person_role: "primary_care_physician" }
+    else
+      address_attributes = attributes_for(:address)
+      {
+        person_role: "contact",
+        address_attributes: address_attributes,
+        addressee: build(:directory_person, address_attributes: address_attributes)
+      }
+    end
+  end
+end

data/spec/support/login_macros.rb

@@ -0,0 +1,26 @@
+module LoginMacros
+  def login_as_admin
+    login_user(:admin)
+  end
+
+  def login_as_clinician
+    login_user(:clinician)
+  end
+
+  def login_as_read_only
+    login_user(:read_only)
+  end
+
+  def login_user(role_trait = :super_admin)
+    user = create(:user, :approved, role_trait)
+    if @request.present? # eg for controller specs
+      @request.env["devise.mapping"] = Devise.mappings[:user]
+      sign_in user
+    else # features
+      login_as user
+    end
+    @current_user = user
+  end
+
+  alias_method :login_as_super_admin, :login_user
+end

data/spec/support/matchers/document.rb

@@ -0,0 +1,5 @@
+RSpec::Matchers.define :match_document do |expected|
+  match do |actual|
+    actual.as_json == expected.as_json
+  end
+end

data/spec/support/matchers/validate_timeliness_of.rb

@@ -0,0 +1,16 @@
+RSpec::Matchers.define :validate_timeliness_of do |attribute|
+  match do |model|
+    model._validators[attribute.to_sym].detect do |validator|
+      validator.class == ActiveModel::Validations::TimelinessValidator &&
+        validator.attributes.include?(attribute)
+    end
+  end
+
+  failure_message do |_actual|
+    "expect #{attribute} to validate timeliness of"
+  end
+
+  failure_message_when_negated do |_actual|
+    "expect #{attribute} to not validate timeliness of"
+  end
+end

data/spec/support/pathology_spec_helper.rb

@@ -0,0 +1,37 @@
+module PathologySpecHelper
+  def create_descriptions(names)
+    names.map { |name| create_observation_description(name) }
+  end
+
+  def create_observations(patient,
+                          descriptions,
+                          observed_at: Time.zone.now,
+                          result: 1)
+    descriptions.map do |description|
+      request = create(:pathology_observation_request, patient: patient)
+      create(:pathology_observation,
+             request: request,
+             description: description,
+             observed_at: observed_at,
+             result: result)
+    end
+  end
+
+  # name and code will be the same
+  def create_observation_description(name)
+    create(:pathology_observation_description, name: name, code: name)
+  end
+
+  def create_patient
+    patient = create(:patient)
+    Renalware::Pathology.cast_patient(patient)
+  end
+
+  def add_descriptions_not_observed_for_patient(*description_names)
+    description_names.map { |name| create_observation_description(name) }
+  end
+
+  def filter_targeted_descriptions(descriptions)
+    descriptions.select { |description| description.name.start_with?("target-") }
+  end
+end

data/spec/support/patients_spec_helper.rb

@@ -0,0 +1,16 @@
+module PatientsSpecHelper
+  def set_modality(patient:,
+                   modality_description:,
+                   started_on: Time.zone.today,
+                   by: Renalware::User.first)
+
+    Renalware::Modalities::ChangePatientModality
+      .new(patient: patient, user: by)
+      .call(
+        description: modality_description,
+        started_on: started_on
+      )
+
+    patient.reload # need to do this in order for current_modality to be set
+  end
+end

data/spec/support/poltergeist.rb

@@ -0,0 +1,2 @@
+require "capybara/poltergeist"
+Capybara.javascript_driver = :poltergeist

data/spec/support/pundit_matcher.rb

@@ -0,0 +1,13 @@
+RSpec::Matchers.define :permit do |action|
+  match do |policy|
+    policy.public_send("#{action}?")
+  end
+
+  failure_message_for_should do |policy|
+    "#{policy.class} does not permit #{action} on #{policy.record} for #{policy.user.inspect}."
+  end
+
+  failure_message_for_should_not do |policy|
+    "#{policy.class} does not forbid #{action} on #{policy.record} for #{policy.user.inspect}."
+  end
+end

data/spec/support/roles_spec_helper.rb

@@ -0,0 +1,7 @@
+module RolesSpecHelper
+  def define_roles
+    %i(super_admin admin clinician read_only).each do |name|
+      Renalware::Role.find_or_create_by!(name: name)
+    end
+  end
+end

data/spec/support/select2_spec_helper.rb

@@ -0,0 +1,13 @@
+module Select2SpecHelper
+  def select2(value, opts)
+    scope = opts[:from]
+    select2_container = first("#{scope} + .select2-container")
+    select2_container.first(".select2-selection").click
+
+    first("input.select2-search__field").set(value)
+    page.execute_script(%|$("#{scope} ~ input.select2-search__field:visible").keyup();|)
+    body = find(:xpath, "//body")
+    matches = body.find_all(".select2-results li", text: value)
+    matches.last.click
+  end
+end

data/spec/support/select_date_spec_helper.rb

@@ -0,0 +1,11 @@
+module SelectDateSpecHelper
+
+  def select_date(date, options = {})
+    field = options[:from]
+    base_id = find(:xpath, ".//label[contains(.,'#{field}')]")[:for]
+    year, month, day = date.split(",")
+    select year,  from: "#{base_id}_1i"
+    select month, from: "#{base_id}_2i"
+    select day,   from: "#{base_id}_3i"
+  end
+end

data/spec/support/shared_contexts/a_global_rule_set.rb

@@ -0,0 +1,19 @@
+shared_context "a global_rule_set" do
+  let!(:clinic) { create(:clinic) }
+  let!(:required_observation_description) { create(:pathology_observation_description) }
+  let!(:request_description) do
+    create(
+      :pathology_request_description,
+      required_observation_description: required_observation_description,
+      bottle_type: "serum"
+    )
+  end
+  let!(:global_rule_set) do
+    create(
+      :pathology_requests_global_rule_set,
+      clinic: clinic,
+      frequency_type: "Once",
+      request_description: request_description
+    )
+  end
+end

data/spec/support/translations.rb

@@ -0,0 +1,12 @@
+module TranslationsHelper
+  def with_translations(locale, translations)
+    original_backend = I18n.backend
+
+    I18n.backend = I18n::Backend::KeyValue.new({}, true)
+    I18n.backend.store_translations(locale, translations)
+
+    yield
+  ensure
+    I18n.backend = original_backend
+  end
+end

data/spec/support/travel.rb

@@ -0,0 +1,7 @@
+RSpec.configure do |config|
+
+  config.after(:each) do
+    travel_back
+  end
+
+end

data/spec/support/webmock.rb

@@ -0,0 +1,3 @@
+require "webmock/rspec"
+
+WebMock.disable_net_connect!(allow_localhost: true)

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: renalware-core
 version: !ruby/object:Gem::Version
-  version: 2.0.0.pre.beta6
+  version: 2.0.0.pre.beta7
 platform: ruby
 authors:
 - Airslie
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-09-09 00:00:00.000000000 Z
+date: 2017-09-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rails
@@ -1139,6 +1139,7 @@ executables: []
 extensions: []
 extra_rdoc_files: []
 files:
+- MIT-LICENSE
 - README.md
 - Rakefile
 - app/assets/images/renalware/NHS-Black.jpg
@@ -3160,6 +3161,145 @@ files:
 - lib/test_support/ajax_helpers.rb
 - lib/test_support/autocomplete_helpers.rb
 - lib/test_support/text_editor_helpers.rb
+- spec/factories/accesses/patients.rb
+- spec/factories/accesses/plans.rb
+- spec/factories/accesses/plans_types.rb
+- spec/factories/accesses/procedures.rb
+- spec/factories/accesses/profiles.rb
+- spec/factories/accesses/sites.rb
+- spec/factories/accesses/types.rb
+- spec/factories/clinical/allergies.rb
+- spec/factories/clinical/body_compositions.rb
+- spec/factories/clinical/dry_weights.rb
+- spec/factories/clinical/patients.rb
+- spec/factories/clinics/appointments.rb
+- spec/factories/clinics/clinic_visits.rb
+- spec/factories/clinics/clinics.rb
+- spec/factories/deaths/cause.rb
+- spec/factories/deaths/modality_descriptions.rb
+- spec/factories/directory/people.rb
+- spec/factories/drugs/drug.rb
+- spec/factories/drugs/drug_types.rb
+- spec/factories/events/events.rb
+- spec/factories/events/events_types.rb
+- spec/factories/hd/cannulation_types.rb
+- spec/factories/hd/dialysers.rb
+- spec/factories/hd/hd_session_document.rb
+- spec/factories/hd/modality_descriptions.rb
+- spec/factories/hd/patient_statistics.rb
+- spec/factories/hd/patients.rb
+- spec/factories/hd/preference_sets.rb
+- spec/factories/hd/profiles.rb
+- spec/factories/hd/sessions.rb
+- spec/factories/hd/stations.rb
+- spec/factories/hospitals/centres.rb
+- spec/factories/hospitals/units.rb
+- spec/factories/letters/archives.rb
+- spec/factories/letters/contact_descriptions.rb
+- spec/factories/letters/contacts.rb
+- spec/factories/letters/descriptions.rb
+- spec/factories/letters/letterheads.rb
+- spec/factories/letters/letters.rb
+- spec/factories/letters/patients.rb
+- spec/factories/letters/primary_care_physicians.rb
+- spec/factories/letters/recipients.rb
+- spec/factories/medications/medication_route.rb
+- spec/factories/medications/prescription.rb
+- spec/factories/medications/prescription_terminations.rb
+- spec/factories/medications/prescription_version.rb
+- spec/factories/messaging/authors.rb
+- spec/factories/messaging/message.rb
+- spec/factories/messaging/patients.rb
+- spec/factories/messaging/receipt.rb
+- spec/factories/messaging/recipients.rb
+- spec/factories/modalities/modalities.rb
+- spec/factories/modalities/modality_descriptions.rb
+- spec/factories/modalities/modality_reasons.rb
+- spec/factories/pathology/consultant.rb
+- spec/factories/pathology/lab.rb
+- spec/factories/pathology/measurement_units.rb
+- spec/factories/pathology/observation_descriptions.rb
+- spec/factories/pathology/observation_requests.rb
+- spec/factories/pathology/observations.rb
+- spec/factories/pathology/patients.rb
+- spec/factories/pathology/request_descriptions.rb
+- spec/factories/pathology/requests/drug_category.rb
+- spec/factories/pathology/requests/global_rule.rb
+- spec/factories/pathology/requests/global_rule_set.rb
+- spec/factories/pathology/requests/patient_rule.rb
+- spec/factories/pathology/requests/request.rb
+- spec/factories/patients/alerts.rb
+- spec/factories/patients/bookmarks.rb
+- spec/factories/patients/ethnicities.rb
+- spec/factories/patients/languages.rb
+- spec/factories/patients/patients.rb
+- spec/factories/patients/practices.rb
+- spec/factories/patients/primary_care_physicians.rb
+- spec/factories/patients/religions.rb
+- spec/factories/patients/users.rb
+- spec/factories/pd/assessments.rb
+- spec/factories/pd/bag_types.rb
+- spec/factories/pd/episode_types.rb
+- spec/factories/pd/exit_site_infections.rb
+- spec/factories/pd/fluid_descriptions.rb
+- spec/factories/pd/infection_organisms.rb
+- spec/factories/pd/modality_descriptions.rb
+- spec/factories/pd/organism_codes.rb
+- spec/factories/pd/patients.rb
+- spec/factories/pd/pd_regimes.rb
+- spec/factories/pd/peritonitis_episode_type_descriptions.rb
+- spec/factories/pd/peritonitis_episodes.rb
+- spec/factories/pd/pet_adequacies.rb
+- spec/factories/pd/regime_bags.rb
+- spec/factories/pd/systems.rb
+- spec/factories/pd/training_sessions.rb
+- spec/factories/pd/training_sites.rb
+- spec/factories/pd/training_types.rb
+- spec/factories/problems/problems.rb
+- spec/factories/renal/patients.rb
+- spec/factories/renal/prd_description.rb
+- spec/factories/renal/profiles.rb
+- spec/factories/reporting/audits.rb
+- spec/factories/snippets/snippets.rb
+- spec/factories/snippets/users.rb
+- spec/factories/system/addresses.rb
+- spec/factories/system/roles.rb
+- spec/factories/system/templates.rb
+- spec/factories/system/users.rb
+- spec/factories/transplants/donations.rb
+- spec/factories/transplants/donor_stage.rb
+- spec/factories/transplants/donor_stage_position.rb
+- spec/factories/transplants/donor_stage_status.rb
+- spec/factories/transplants/live_donor_modality_description.rb
+- spec/factories/transplants/modality_descriptions.rb
+- spec/factories/transplants/patients.rb
+- spec/factories/transplants/recipient_followups.rb
+- spec/factories/transplants/recipient_operations.rb
+- spec/factories/transplants/registration_status_descriptions.rb
+- spec/factories/transplants/registration_statuses.rb
+- spec/factories/transplants/registrations.rb
+- spec/support/capybara_helper.rb
+- spec/support/database_cleaner.rb
+- spec/support/date_helpers.rb
+- spec/support/devise_spec_helper.rb
+- spec/support/drugs_spec_helper.rb
+- spec/support/factory_girl.rb
+- spec/support/json_helpers.rb
+- spec/support/letters_spec_helper.rb
+- spec/support/login_macros.rb
+- spec/support/matchers/document.rb
+- spec/support/matchers/validate_timeliness_of.rb
+- spec/support/pathology_spec_helper.rb
+- spec/support/patients_spec_helper.rb
+- spec/support/poltergeist.rb
+- spec/support/pundit_matcher.rb
+- spec/support/roles_spec_helper.rb
+- spec/support/select2_spec_helper.rb
+- spec/support/select_date_spec_helper.rb
+- spec/support/shared_contexts/a_global_rule_set.rb
+- spec/support/translations.rb
+- spec/support/travel.rb
+- spec/support/webmock.rb
 - vendor/assets/fonts/foundation-icons.eot
 - vendor/assets/fonts/foundation-icons.scss
 - vendor/assets/fonts/foundation-icons.svg
@@ -3177,62 +3317,6 @@ files:
 - vendor/assets/stylesheets/renalware/print.min.css
 - vendor/assets/stylesheets/renalware/select2/css/select2.css
 - vendor/assets/stylesheets/renalware/select2/css/select2.min.css
-- vendor/xsd/ukrdc/README.md
-- vendor/xsd/ukrdc/Schema/Allergies/Allergy.xsd
-- vendor/xsd/ukrdc/Schema/ClinicalRelationships/ClinicalRelationship.xsd
-- vendor/xsd/ukrdc/Schema/Diagnoses/CauseOfDeath.xsd
-- vendor/xsd/ukrdc/Schema/Diagnoses/Diagnosis.xsd
-- vendor/xsd/ukrdc/Schema/Diagnoses/RenalDiagnosis.xsd
-- vendor/xsd/ukrdc/Schema/Documents/Document.xsd
-- vendor/xsd/ukrdc/Schema/Encounters/Encounter.xsd
-- vendor/xsd/ukrdc/Schema/Encounters/TransplantList.xsd
-- vendor/xsd/ukrdc/Schema/Encounters/Treatment.xsd
-- vendor/xsd/ukrdc/Schema/FamilyHistories/FamilyHistory.xsd
-- vendor/xsd/ukrdc/Schema/LabOrders/LabOrder.xsd
-- vendor/xsd/ukrdc/Schema/Medications/Medication.xsd
-- vendor/xsd/ukrdc/Schema/Observations/Observation.xsd
-- vendor/xsd/ukrdc/Schema/Patient.xsd
-- vendor/xsd/ukrdc/Schema/Procedures/DialysisSession.xsd
-- vendor/xsd/ukrdc/Schema/Procedures/Procedure.xsd
-- vendor/xsd/ukrdc/Schema/Procedures/Transplant.xsd
-- vendor/xsd/ukrdc/Schema/Procedures/VascularAccess.xsd
-- vendor/xsd/ukrdc/Schema/ProgramMemberships/ProgramMembership.xsd
-- vendor/xsd/ukrdc/Schema/README.md
-- vendor/xsd/ukrdc/Schema/SocialHistories/SocialHistory.xsd
-- vendor/xsd/ukrdc/Schema/Surveys/Survey.xsd
-- vendor/xsd/ukrdc/Schema/Types/ActionCode.xsd
-- vendor/xsd/ukrdc/Schema/Types/Address.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_DMD.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_EDTA_COD.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_EDTA_PRD.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_HL7_0004.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_HL7_00204.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_HL7_00206.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_RR1.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_RR23.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_RR7_Discharge.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_RR7_Treatment.xsd
-- vendor/xsd/ukrdc/Schema/Types/CF_SNOMED.xsd
-- vendor/xsd/ukrdc/Schema/Types/Clinician.xsd
-- vendor/xsd/ukrdc/Schema/Types/CodeTableDetail.xsd
-- vendor/xsd/ukrdc/Schema/Types/CodedField.xsd
-- vendor/xsd/ukrdc/Schema/Types/CommonMetadata.xsd
-- vendor/xsd/ukrdc/Schema/Types/ContactDetail.xsd
-- vendor/xsd/ukrdc/Schema/Types/DrugProduct.xsd
-- vendor/xsd/ukrdc/Schema/Types/EthnicGroup.xsd
-- vendor/xsd/ukrdc/Schema/Types/FamilyDoctor.xsd
-- vendor/xsd/ukrdc/Schema/Types/LabResultItem.xsd
-- vendor/xsd/ukrdc/Schema/Types/LabTestItem.xsd
-- vendor/xsd/ukrdc/Schema/Types/Language.xsd
-- vendor/xsd/ukrdc/Schema/Types/Location.xsd
-- vendor/xsd/ukrdc/Schema/Types/NV_RR14.xsd
-- vendor/xsd/ukrdc/Schema/Types/Name.xsd
-- vendor/xsd/ukrdc/Schema/Types/Occupation.xsd
-- vendor/xsd/ukrdc/Schema/Types/Order.xsd
-- vendor/xsd/ukrdc/Schema/Types/PatientNumber.xsd
-- vendor/xsd/ukrdc/Schema/Types/PersonalContactType.xsd
-- vendor/xsd/ukrdc/Schema/Types/Result.xsd
-- vendor/xsd/ukrdc/Schema/UKRDC.xsd
 homepage: https://github.com/airslie/renalware-core
 licenses:
 - MIT