red-chainer 0.1.0

checksums.yaml

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+  data.tar.gz: 915a0479a543ef59e8194a5b46860261651c332d
+SHA512:
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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/
+
+# rspec failure tracking
+.rspec_status

data/.rspec

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+--format documentation
+--color

data/.travis.yml

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+sudo: false
+language: ruby
+rvm:
+  - 2.4.1
+before_install: gem install bundler -v 1.15.1

data/CODE_OF_CONDUCT.md

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+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to making participation in our project and
+our community a harassment-free experience for everyone, regardless of age, body
+size, disability, ethnicity, gender identity and expression, level of experience,
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+* Using welcoming and inclusive language
+* Being respectful of differing viewpoints and experiences
+* Gracefully accepting constructive criticism
+* Focusing on what is best for the community
+* Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery and unwelcome sexual attention or
+advances
+* Trolling, insulting/derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or electronic
+  address, without explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event. Representation of a project may be
+further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting the project team at hata.yusaku.1225@gmail.com. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. The project team is
+obligated to maintain confidentiality with regard to the reporter of an incident.
+Further details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good
+faith may face temporary or permanent repercussions as determined by other
+members of the project's leadership.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
+available at [http://contributor-covenant.org/version/1/4][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/4/

data/Gemfile

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+source "https://rubygems.org"
+
+# Specify your gem's dependencies in red-chainer.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2015 Preferred Infrastructure, Inc.
+Copyright (c) 2015 Preferred Networks, Inc.
+Copyright (c) 2017 yusaku.hatanaka
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# README
+
+## Name
+
+Red Cahiner
+
+## Description
+
+Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/chainer`. To experiment with that code, run `bin/console` for an interactive prompt.
+
+TODO: Delete this and the text above, and describe your gem
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'red-chainer', github: 'red-data-tools/red-chainer' 
+```
+
+And then execute:
+
+```ruby
+$ bundle
+```
+
+Or install it yourself as:
+
+```ruby
+gem install specific_install
+gem specific_install -l 'https://github.com/red-data-tools/red-chainer'
+```
+
+## Usage
+mnist sample program is [here](./examples/mnist.rb)
+
+```ruby
+# install Gemfile
+$ bundle exec ruby examples/mnist.rb
+# install yourself
+$ ruby examples/mnist.rb
+```
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/red-chainer. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
+
+## Code of Conduct
+
+Everyone interacting in the Chainer project’s codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/[USERNAME]/red-chainer/blob/master/CODE_OF_CONDUCT.md).

data/Rakefile

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+require "bundler/gem_tasks"
+
+desc "Run tests"
+task :test do
+  ruby("test/run_test.rb")
+end
+
+task default: :test

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "red-chainer"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start(__FILE__)

data/bin/setup

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+#!/usr/bin/env bash
+set -euo pipefail
+IFS=$'\n\t'
+set -vx
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/examples/mnist.rb

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+require 'chainer'
+require 'fileutils'
+require 'tmpdir'
+
+class MLP < Chainer::Chain
+  L = Chainer::Links::Connection::Linear
+  R = Chainer::Functions::Activation::Relu
+
+  def initialize(n_units, n_out)
+    super()
+    init_scope do
+      @l1 = L.new(nil, out_size: n_units)
+      @l2 = L.new(nil, out_size: n_units)
+      @l3 = L.new(nil, out_size: n_out)
+    end
+  end
+
+  def call(x)
+    h1 = R.relu(@l1.(x))
+    h2 = R.relu(@l2.(h1))
+    @l3.(h2)
+  end
+end
+
+model = Chainer::Links::Model::Classifier.new(MLP.new(1000, 10))
+
+optimizer = Chainer::Optimizers::Adam.new
+optimizer.setup(model)
+train, test = Chainer::Datasets::Mnist.get_mnist
+
+train_iter = Chainer::Iterators::SerialIterator.new(train, 100)
+test_iter = Chainer::Iterators::SerialIterator.new(test, 100, repeat: false, shuffle: false)
+
+updater = Chainer::Training::StandardUpdater.new(train_iter, optimizer, device: -1)
+trainer = Chainer::Training::Trainer.new(updater, stop_trigger: [20, 'epoch'], out: 'result')
+
+trainer.extend(Chainer::Training::Extensions::Evaluator.new(test_iter, model, device: -1))
+trainer.extend(Chainer::Training::Extensions::LogReport.new)
+trainer.extend(Chainer::Training::Extensions::PrintReport.new(['epoch', 'main/loss', 'validation/main/loss', 'main/accuracy', 'validation/main/accuracy', 'elapsed_time']))
+trainer.extend(Chainer::Training::Extensions::ProgressBar.new)
+
+trainer.run

data/lib/chainer.rb

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+require "weakref"
+
+require "chainer/version"
+
+require 'chainer/configuration'
+require 'chainer/function'
+require 'chainer/optimizer'
+require 'chainer/gradient_method'
+require 'chainer/hyperparameter'
+require 'chainer/dataset/iterator'
+require 'chainer/dataset/convert'
+require 'chainer/initializer'
+require 'chainer/initializers/init'
+require 'chainer/initializers/constant'
+require 'chainer/initializers/normal'
+require 'chainer/iterators/serial_iterator'
+require 'chainer/link'
+require 'chainer/links/connection/linear'
+require 'chainer/links/model/classifier'
+require 'chainer/variable'
+require 'chainer/variable_node'
+require 'chainer/utils/initializer'
+require 'chainer/utils/variable'
+require 'chainer/utils/array'
+require 'chainer/functions/activation/relu'
+require 'chainer/functions/activation/log_softmax'
+require 'chainer/functions/evaluation/accuracy'
+require 'chainer/functions/math/basic_math'
+require 'chainer/functions/loss/softmax_cross_entropy'
+require 'chainer/functions/connection/linear'
+require 'chainer/training/extension'
+require 'chainer/training/extensions/evaluator'
+require 'chainer/training/extensions/log_report'
+require 'chainer/training/extensions/print_report'
+require 'chainer/training/extensions/progress_bar'
+require 'chainer/training/trainer'
+require 'chainer/training/updater'
+require 'chainer/training/util'
+require 'chainer/training/standard_updater'
+require 'chainer/training/triggers/interval'
+require 'chainer/parameter'
+require 'chainer/optimizers/adam'
+require 'chainer/dataset/download'
+require 'chainer/datasets/mnist'
+require 'chainer/datasets/tuple_dataset'
+require 'chainer/reporter'
+
+require 'numo/narray'
+
+module Chainer
+  def self.configure
+    yield(configuration)
+  end
+
+  def self.configuration
+    @configuration ||= Configuration.new
+  end
+end
+

data/lib/chainer/configuration.rb

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+module Chainer
+  class Configuration
+    attr_accessor :enable_backprop
+
+    def initialize
+      @enable_backprop = true
+    end
+  end
+end
+

data/lib/chainer/dataset/convert.rb

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+module Chainer
+  module Dataset
+    module Convert
+      def self.to_device(device, x)
+        # TODO: support cuda
+        x
+      end
+
+      def self.concat_examples(batch, device: nil, padding: nil)
+        raise "batch is empty" if batch.size == 0
+        first_elem = batch[0]
+
+        if first_elem.kind_of?(Array)
+          result = []
+          unless padding.kind_of?(Array)
+            padding = [padding] * first_elem.size
+          end
+
+          first_elem.size.times do |i|
+            x = concat_arrays(batch.map { |b| b[i] }, padding[i])
+            result.push(to_device(device, x))
+          end
+
+          return result
+        else
+          return to_device(device, concat_arrays(batch, padding))
+        end
+      end
+
+      def self.concat_arrays(arrays, padding)
+        unless arrays[0].kind_of?(Numo::NArray)
+          arrays = Numo::NArray.cast(arrays)
+        end
+
+        if padding
+          return concat_arrays_with_padding(arrays, padding)
+        end
+
+        Numo::NArray.[](*arrays.to_a.map { |arr| arr.kind_of?(Numeric) ? arr : Numo::NArray.[](*arr) })
+      end
+
+      def self.concat_arrays_with_padding(arrays, padding)
+        shape = Numo::Int32.[](arrays[0].shape)
+        arrays[1...arrays.len].each do |array|
+          if Numo::Bit.[](shape != array.shape).any?
+            # TODO: numpy maximum
+          end
+        end
+
+        shape = [shape.insert(0, arrays.size)]
+        result = arrays[0].dtype.[](*shape).full(padding)
+        arrays.size.times do |i|
+          src = arrays[i]
+          slices = src.shape.map { |s| [s] }
+          result[[i] + slices] = src
+        end
+
+        result
+      end
+    end
+  end
+end

data/lib/chainer/dataset/download.rb

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+require "open-uri"
+require "pstore"
+
+module Chainer
+  module Dataset
+    module Download
+      DATASET_ROOT = ENV.fetch("RED_CHAINER_DATASET_ROOT", File.expand_path(".chainer/dataset", "~"))
+
+      def self.cached_download(url)
+        cache_root = File.expand_path('_dl_cache', DATASET_ROOT)
+        FileUtils.mkdir_p(cache_root)
+        lock_path = File.expand_path('_dl_lock', cache_root)
+        urlhash = Digest::MD5.hexdigest(url)
+        cache_path = File.expand_path(urlhash, cache_root)
+
+        return cache_path if File.exist?(cache_path)
+
+        temp_root = Dir.mktmpdir(nil, cache_root)
+        temp_path = File.expand_path('dl', temp_root)
+        open(url) do |f|
+          puts "Downloading from #{url}"
+          open(temp_path, "w+b") do |out|
+            out.write(f.read)
+          end
+          FileUtils.mv(temp_path, cache_path)
+          FileUtils.rm_r(temp_root)
+        end
+        cache_path
+      end
+
+      def self.get_dataset_directory(dataset_name, create_directory: true)
+        path = File.expand_path(dataset_name, DATASET_ROOT)
+        FileUtils.mkdir_p(path) if create_directory
+        path
+      end
+
+      def self.cache_or_load_file(path, &creator)
+        raise 'Please set dataset creator on block' if creator.nil?
+
+        return PStore.new(path).transaction { |t| t['data'] } if File.exist?(path)
+
+        data = creator.call
+        PStore.new(path).transaction do |t|
+          t['data'] = data
+        end
+        data
+      rescue TypeError => e
+        puts e.message
+        FileUtils.rm_f(path)
+        cache_or_load_file(path) do
+          creator.call
+        end
+      end
+    end
+  end
+end