rbbt-views 0.1.2 → 1.0.0

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Files changed (156) hide show
  1. data/lib/rbbt/workflow/rest.rb +142 -57
  2. data/lib/rbbt/workflow/rest/auth.rb +3 -2
  3. data/lib/rbbt/workflow/rest/client.rb +4 -1
  4. data/lib/rbbt/workflow/rest/email.rb +23 -0
  5. data/lib/rbbt/workflow/rest/entity.rb +87 -62
  6. data/lib/rbbt/workflow/rest/helpers.rb +38 -0
  7. data/lib/rbbt/workflow/rest/render.rb +532 -153
  8. data/lib/rbbt/workflow/rest/util.rb +81 -104
  9. data/share/views/compass/_base.sass +0 -3
  10. data/share/views/compass/app.sass +0 -103
  11. data/share/views/compass/compass.config +5 -5
  12. data/share/views/compass/layout.sass +133 -0
  13. data/share/views/compass/main.sass +28 -5
  14. data/share/views/entity/GOTerm.haml +15 -0
  15. data/share/views/entity/Gene.haml +7 -0
  16. data/share/views/entity/GenomicMutation.haml +10 -0
  17. data/share/views/entity/KeggPathway.haml +13 -0
  18. data/share/views/entity/MutatedIsoform.haml +43 -0
  19. data/share/views/entity/NCIBioCartaPathways.haml +9 -0
  20. data/share/views/entity/NCINaturePathways.haml +9 -0
  21. data/share/views/entity/NCIReactomePathways.haml +9 -0
  22. data/share/views/entity/PfamDomain.haml +1 -0
  23. data/share/views/entity_list/Default.haml +10 -0
  24. data/share/views/form.haml +2 -54
  25. data/share/views/front.haml +1 -0
  26. data/share/views/job_list.haml +1 -1
  27. data/share/views/js/app.js +122 -68
  28. data/share/views/layout.haml +28 -22
  29. data/share/views/partials/_form.haml +36 -0
  30. data/share/views/partials/_job_control.haml +8 -8
  31. data/share/views/partials/_result_table.haml +12 -40
  32. data/share/views/partials/_result_table_controls.haml +36 -28
  33. data/share/views/partials/_table.haml +39 -0
  34. data/share/views/public/favicon.gif +0 -0
  35. data/share/views/public/plugins/jmol/CHANGES.txt +11124 -0
  36. data/share/views/public/plugins/jmol/COPYRIGHT.txt +73 -0
  37. data/share/views/public/plugins/jmol/ChimeToJmol.jar +0 -0
  38. data/share/views/public/plugins/jmol/Jmol.jar +0 -0
  39. data/share/views/public/plugins/jmol/Jmol.js +1711 -0
  40. data/share/views/public/plugins/jmol/JmolApplet.jar +0 -0
  41. data/share/views/public/plugins/jmol/JmolApplet0.jar +0 -0
  42. data/share/views/public/plugins/jmol/JmolApplet0_Console.jar +0 -0
  43. data/share/views/public/plugins/jmol/JmolApplet0_Minimize.jar +0 -0
  44. data/share/views/public/plugins/jmol/JmolApplet0_Popup.jar +0 -0
  45. data/share/views/public/plugins/jmol/JmolApplet0_ReadersCifPdb.jar +0 -0
  46. data/share/views/public/plugins/jmol/JmolApplet0_ReadersMolXyz.jar +0 -0
  47. data/share/views/public/plugins/jmol/JmolApplet0_ReadersMore.jar +0 -0
  48. data/share/views/public/plugins/jmol/JmolApplet0_ReadersQuantum.jar +0 -0
  49. data/share/views/public/plugins/jmol/JmolApplet0_ReadersSimple.jar +0 -0
  50. data/share/views/public/plugins/jmol/JmolApplet0_ReadersXml.jar +0 -0
  51. data/share/views/public/plugins/jmol/JmolApplet0_ReadersXtal.jar +0 -0
  52. data/share/views/public/plugins/jmol/JmolApplet0_ShapeBio.jar +0 -0
  53. data/share/views/public/plugins/jmol/JmolApplet0_ShapeSpecial.jar +0 -0
  54. data/share/views/public/plugins/jmol/JmolApplet0_ShapeSurface.jar +0 -0
  55. data/share/views/public/plugins/jmol/JmolApplet0_Smiles.jar +0 -0
  56. data/share/views/public/plugins/jmol/JmolApplet0_Symmetry.jar +0 -0
  57. data/share/views/public/plugins/jmol/JmolApplet0_i18n_ar.jar +0 -0
  58. data/share/views/public/plugins/jmol/JmolApplet0_i18n_bs.jar +0 -0
  59. data/share/views/public/plugins/jmol/JmolApplet0_i18n_ca.jar +0 -0
  60. data/share/views/public/plugins/jmol/JmolApplet0_i18n_cs.jar +0 -0
  61. data/share/views/public/plugins/jmol/JmolApplet0_i18n_da.jar +0 -0
  62. data/share/views/public/plugins/jmol/JmolApplet0_i18n_de.jar +0 -0
  63. data/share/views/public/plugins/jmol/JmolApplet0_i18n_el.jar +0 -0
  64. data/share/views/public/plugins/jmol/JmolApplet0_i18n_en_GB.jar +0 -0
  65. data/share/views/public/plugins/jmol/JmolApplet0_i18n_es.jar +0 -0
  66. data/share/views/public/plugins/jmol/JmolApplet0_i18n_et.jar +0 -0
  67. data/share/views/public/plugins/jmol/JmolApplet0_i18n_fi.jar +0 -0
  68. data/share/views/public/plugins/jmol/JmolApplet0_i18n_fr.jar +0 -0
  69. data/share/views/public/plugins/jmol/JmolApplet0_i18n_fy.jar +0 -0
  70. data/share/views/public/plugins/jmol/JmolApplet0_i18n_hu.jar +0 -0
  71. data/share/views/public/plugins/jmol/JmolApplet0_i18n_hy.jar +0 -0
  72. data/share/views/public/plugins/jmol/JmolApplet0_i18n_id.jar +0 -0
  73. data/share/views/public/plugins/jmol/JmolApplet0_i18n_it.jar +0 -0
  74. data/share/views/public/plugins/jmol/JmolApplet0_i18n_jv.jar +0 -0
  75. data/share/views/public/plugins/jmol/JmolApplet0_i18n_ko.jar +0 -0
  76. data/share/views/public/plugins/jmol/JmolApplet0_i18n_ms.jar +0 -0
  77. data/share/views/public/plugins/jmol/JmolApplet0_i18n_nb.jar +0 -0
  78. data/share/views/public/plugins/jmol/JmolApplet0_i18n_nl.jar +0 -0
  79. data/share/views/public/plugins/jmol/JmolApplet0_i18n_oc.jar +0 -0
  80. data/share/views/public/plugins/jmol/JmolApplet0_i18n_pl.jar +0 -0
  81. data/share/views/public/plugins/jmol/JmolApplet0_i18n_pt.jar +0 -0
  82. data/share/views/public/plugins/jmol/JmolApplet0_i18n_pt_BR.jar +0 -0
  83. data/share/views/public/plugins/jmol/JmolApplet0_i18n_ru.jar +0 -0
  84. data/share/views/public/plugins/jmol/JmolApplet0_i18n_sl.jar +0 -0
  85. data/share/views/public/plugins/jmol/JmolApplet0_i18n_sv.jar +0 -0
  86. data/share/views/public/plugins/jmol/JmolApplet0_i18n_ta.jar +0 -0
  87. data/share/views/public/plugins/jmol/JmolApplet0_i18n_te.jar +0 -0
  88. data/share/views/public/plugins/jmol/JmolApplet0_i18n_tr.jar +0 -0
  89. data/share/views/public/plugins/jmol/JmolApplet0_i18n_uk.jar +0 -0
  90. data/share/views/public/plugins/jmol/JmolApplet0_i18n_zh_CN.jar +0 -0
  91. data/share/views/public/plugins/jmol/JmolApplet0_i18n_zh_TW.jar +0 -0
  92. data/share/views/public/plugins/jmol/JmolAppletSigned.jar +0 -0
  93. data/share/views/public/plugins/jmol/JmolAppletSigned0.jar +0 -0
  94. data/share/views/public/plugins/jmol/JmolAppletSigned0_Console.jar +0 -0
  95. data/share/views/public/plugins/jmol/JmolAppletSigned0_Minimize.jar +0 -0
  96. data/share/views/public/plugins/jmol/JmolAppletSigned0_MultiTouch.jar +0 -0
  97. data/share/views/public/plugins/jmol/JmolAppletSigned0_Popup.jar +0 -0
  98. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersCifPdb.jar +0 -0
  99. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersMolXyz.jar +0 -0
  100. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersMore.jar +0 -0
  101. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersQuantum.jar +0 -0
  102. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersSimple.jar +0 -0
  103. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersXml.jar +0 -0
  104. data/share/views/public/plugins/jmol/JmolAppletSigned0_ReadersXtal.jar +0 -0
  105. data/share/views/public/plugins/jmol/JmolAppletSigned0_ShapeBio.jar +0 -0
  106. data/share/views/public/plugins/jmol/JmolAppletSigned0_ShapeSpecial.jar +0 -0
  107. data/share/views/public/plugins/jmol/JmolAppletSigned0_ShapeSurface.jar +0 -0
  108. data/share/views/public/plugins/jmol/JmolAppletSigned0_Smiles.jar +0 -0
  109. data/share/views/public/plugins/jmol/JmolAppletSigned0_Symmetry.jar +0 -0
  110. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_ar.jar +0 -0
  111. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_bs.jar +0 -0
  112. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_ca.jar +0 -0
  113. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_cs.jar +0 -0
  114. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_da.jar +0 -0
  115. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_de.jar +0 -0
  116. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_el.jar +0 -0
  117. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_en_GB.jar +0 -0
  118. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_es.jar +0 -0
  119. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_et.jar +0 -0
  120. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_fi.jar +0 -0
  121. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_fr.jar +0 -0
  122. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_fy.jar +0 -0
  123. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_hu.jar +0 -0
  124. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_hy.jar +0 -0
  125. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_id.jar +0 -0
  126. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_it.jar +0 -0
  127. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_jv.jar +0 -0
  128. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_ko.jar +0 -0
  129. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_ms.jar +0 -0
  130. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_nb.jar +0 -0
  131. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_nl.jar +0 -0
  132. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_oc.jar +0 -0
  133. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_pl.jar +0 -0
  134. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_pt.jar +0 -0
  135. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_pt_BR.jar +0 -0
  136. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_ru.jar +0 -0
  137. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_sl.jar +0 -0
  138. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_sv.jar +0 -0
  139. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_ta.jar +0 -0
  140. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_te.jar +0 -0
  141. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_tr.jar +0 -0
  142. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_uk.jar +0 -0
  143. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_zh_CN.jar +0 -0
  144. data/share/views/public/plugins/jmol/JmolAppletSigned0_i18n_zh_TW.jar +0 -0
  145. data/share/views/public/plugins/jmol/JmolData.jar +0 -0
  146. data/share/views/public/plugins/jmol/LEAME.txt +217 -0
  147. data/share/views/public/plugins/jmol/LICENSE.txt +504 -0
  148. data/share/views/public/plugins/jmol/README.txt +203 -0
  149. data/share/views/public/plugins/jmol/jmol +22 -0
  150. data/share/views/public/plugins/jmol/jmol.bat +5 -0
  151. data/share/views/public/plugins/jmol/jmol.mac +0 -0
  152. data/share/views/public/plugins/jmol/jmol.sh +39 -0
  153. data/share/views/public/plugins/jquery/js/jquery.form.js +980 -0
  154. data/share/views/result.haml +2 -2
  155. metadata +139 -6
  156. data/share/views/workflow_list.haml +0 -5
@@ -0,0 +1,203 @@
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+ ==============================================================================
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+ === Jmol ===
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+ ==============================================================================
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+ Jmol: an open-source Java viewer for chemical structures in 3D,
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+ with features for chemicals, crystals, materials and biomolecules.
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+ ==============================================================================
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+
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+ Jmol is an open-source molecule viewer and editor written in Java.
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+
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+ Full information is available at http://www.jmol.org/
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+
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+ Usage questions and comments should be posted to jmol-users@lists.sourceforge.net
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+
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+ Development questions, suggestions and comments should be posted
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+ to jmol-developers@lists.sf.net
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+
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+
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+ List of files included:
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+ -------------------
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+
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+
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+ == Files with information ==
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+
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+ === README.txt ===
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+ This file.
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+
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+ === LEAME.txt ===
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+ The Spanish version of README.txt
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+
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+ === COPYRIGHT.txt ===
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+ The copyright explanations regarding Jmol and its 3rd-party components.
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+
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+ === LICENSE.txt ===
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+ The GNU Lesser General Public License, under which Jmol is released.
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+
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+ === CHANGES.txt ===
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+ A list with a history of the feature additions in each version of Jmol.
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+
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+
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+ == Batch and shell files ==
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+ These can be used to start Jmol application from a command line and,
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+ particularly, to impose a certain combination of parameters
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+ (see http://wiki.jmol.org/index.php/Jmol_Application#Command_line_options).
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+
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+ === jmol ===
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+ ???? (Some kind of batch file)
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+
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+ === jmol.bat ===
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+ A batch file to start Jmol application under Windows.
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+
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+ === jmol.mac ===
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+ ??? (Some kind of batch file)
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+
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+ === jmol.sh ===
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+ A shell script to start Jmol application under Unix-like systems, like Linux,
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+ BSD, Solaris and Cygwin for Windows.
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+
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+
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+ == Files of Jmol application ==
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+ This is used as a standalone program.
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+
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+ === Jmol.jar ===
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+ The application executable file (a program written in Java). This works as any
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+ other program: opens in its own window, can be resized or minimized, admits
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+ drag-and-drop of files over it, has a top menu bar, can open and save files,
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+ etc. It can be open from the command line (particulary, using the shell or batch
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+ files described above), but if Java is properly configured in your system, it's
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+ usually enough to double-click on the file
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+ (see http://wiki.jmol.org/index.php/Jmol_Application#Starting_Jmol_Application
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+ for more details).
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+
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+ === JmolData.jar ===
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+ This is a slimmed down version of Jmol.jar that lacks all visualization
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+ capabilities. So, it betrays the whole (classic) concept of what Jmol is, but
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+ with JmolData and some clever scripting you can get just about any information
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+ you want out of a model and output it any way you want.
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+
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+ It operates only from the command line, designed for extracting data from a
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+ model or set of models. You are limited to commands that don't have to do with
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+ visualization: there are bonds but no "sticks", atoms but no "dots", helices but
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+ no "cartoons".
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+
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+
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+ == Files of Jmol applet ==
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+ This is used inside web pages.
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+
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+ === Jmol.js ===
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+ The library, written in JavaScript language, that assists in the programming of
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+ web pages that use Jmol applet, without the need to know and write detailed
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+ JmolApplet code.
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+
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+ This library uses by default the split version of the applet (unsigned or
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+ signed).
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+
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+ Fully documented at http://jmol.org/jslibrary/
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+
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+ === JmolApplet0.jar, JmolApplet0(severalSuffixes).jar ===
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+ The applet, i.e. a version of the program that will only run when embedded in
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+ a web page.
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+
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+ The applet is divided up into several pieces according to their function, so
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+ that if a page does not require a component, that component is not downloaded
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+ from the server.
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+ It is still recommended that you put all JmolApplet0*.jar files on your server
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+ even if your page does not use the capabilities provided by some of the files,
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+ because the pop-up menu and Jmol console both allow users to access parts of
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+ Jmol you might not have considered.
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+
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+ This split version is the one that will be used by default if you use Jmol.js
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+ (which is the recommended method).
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+ For that, use the simplest form of jmolInitialize(), just indicating the
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+ directory or folder containing the set of jar files:
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+ jmolInitialize("directory-containing-jar-files")
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+ for example,
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+ jmolInitialize(".")
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+ (if jar files are in the same folder as the web page)
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+ jmolInitialize("../jmol")
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+ (if jar files are in a parallel folder, named 'jmol')
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+
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+ === JmolAppletSigned0.jar, JmolAppletSigned0(severalSuffixes).jar ===
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+ An equivalent version of the applet, but this is a "signed" applet (a term in
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+ Java security language). This means it must be authorized by the web
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+ page visitor for it to run, but then it will have less security restrictions for
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+ file access. For example, it can access files on any part of the user's hard
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+ disk or from any other web server.
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+
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+ Typically users get a message asking if they want to accept the "certificate" or
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+ if they "trust" the applet (''see notes below''). JmolAppletSigned.jar should
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+ be used with this in mind. Other than reading files, Jmol does not currently
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+ use other capabilities of signed applets, such as accessing the system
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+ clipboard or writing files. Use only if you know what you are doing and have
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+ considered the security issues.
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+
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+ To use this with Jmol.js, use the form:
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+ jmolInitialize("directory-containing-jar-files", true)
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+ or
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+ jmolInitialize("directory-containing-jar-files", "JmolAppletSigned0.jar")
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+
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+ Notes:
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+ * The security feature requesting to trust the applet may not always be enabled
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+ on users' systems.
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+ * The message requesting permission will be displayed for each of the 14 (or
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+ more) loadable files.
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+ * The user may have the option to trust the applet permanently and so avoid
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+ having to give permission every time (s)he visits a page that uses Jmol.
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+
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+ === JmolApplet.jar ===
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+ This is an all-in-one or monolithic file, kept mainly for compatibility with old
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+ pages that call it explicitly.
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+ This single file is equivalent to the whole set of JmolApplet0*.jar files,
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+ explained above.
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+ The recommended procedure is not to use this monolithic file, but the split
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+ version (JmolApplet0.jar etc.). In particular, Jmol.js uses the split version
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+ by default.
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+
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+ You may wish to use this if you want to keep your website simple or you just
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+ want to upload a single jar file whenever new versions are released.
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+ However, this will load Jmol slower than the split versions (described above),
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+ as all the modules (adding up to 2 MB), needed or not, must get loaded onto a
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+ user's machine before any structure is displayed.
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+
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+ To invoke JmolApplet.jar from Jmol.js, either:
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+
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+ a) put it in the directory containing the HTML page requiring it and do not use
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+ jmolInitialize(),
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+
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+ or
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+
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+ b) identify it explicitly in jmolInitialize(), for example:
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+ jmolInitialize("directory-containing-jar-files", "JmolApplet.jar")
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+
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+ === JmolAppletSigned.jar ===
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+ An equivalent version of the monolithic applet, but this is a "signed" applet
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+ (a term in Java security language). This means it must be authorized by the web
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+ page visitor for it to run, but then it will have less security restrictions for
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+ file access. For example, it can access files on any part of the user's hard
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+ disk or from any other web server.
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+
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+ Typically users get a message asking if they want to accept the "certificate" or
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+ if they "trust" the applet, but this security feature is not always enabled.
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+ JmolAppletSigned.jar should be used with this in mind. Other than reading files,
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+ Jmol does not currently utilize other capabilities of signed applets, such as
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+ accessing the System clipboard or writing files. Use only if you know what you
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+ are doing and have considered the security issues.
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+
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+ To invoke JmolAppletSigned.jar from Jmol.js, use:
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+ jmolInitialize("directory-containing-jar-files", "JmolAppletSigned.jar")
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+
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+ === JmolSmilesApplet.jar ===
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+ This is currently not included in the distribution, but may be obtained from the
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+ development site.
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+
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+ This is a lightweight applet, with no visible interface, that allows to check
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+ SMILES strings. This is particularly useful for comparison of stereochemistry,
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+ for example from structures drawn using the JME applet.
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+
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+ The same functionality is included in the regular JmolApplet.
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+
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+
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+ == Notes ==
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+
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+ # Given the descriptions, you will realize that the distribution package
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+ contains 4 full copies of the applet (signed or unsigned, split or not).
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+ #!/bin/sh
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+
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+ # Collect -D & -m options as java arguments
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+ command=java
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+ while [ `echo $1 | egrep '^-D|^-m' | wc -l` != 0 ]; do
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+ command="$command $1"
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+ shift
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+ done
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+
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+ if [ -f ./Jmol.jar ] ; then
11
+ jarpath=./Jmol.jar
12
+ elif [ -f ./build/Jmol.jar ] ; then
13
+ jarpath=./build/Jmol.jar
14
+ elif [ -f $JMOL_HOME/Jmol.jar ] ; then
15
+ jarpath=$JMOL_HOME/Jmol.jar
16
+ elif [ -f /usr/share/jmol/Jmol.jar ] ; then
17
+ jarpath=/usr/share/jmol/Jmol.jar
18
+ else
19
+ echo Jmol.jar not found
20
+ exit
21
+ fi
22
+ $command -Xmx512m -jar $jarpath $@
@@ -0,0 +1,5 @@
1
+ @echo off
2
+ rem Set JMOL_HOME to the Jmol installation directory.
3
+ rem
4
+ if "%JMOL_HOME%x"=="x" set JMOL_HOME="."
5
+ java -Xmx512m -jar "%JMOL_HOME%\Jmol.jar" %1 %2 %3 %4 %5 %6 %7 %8 %9
@@ -0,0 +1,39 @@
1
+ #!/bin/sh
2
+
3
+ # Collect -D & -m options as java arguments
4
+ command=java
5
+ while [ `echo $1 | egrep '^-D|^-m' | wc -l` != 0 ]; do
6
+ command="$command $1"
7
+ shift
8
+ done
9
+
10
+ # Determine installation location
11
+ if [ "$JMOL_HOME" = "" ]; then
12
+ binDir=${0%/*}
13
+ if [ "$binDir" = "$0" ]; then
14
+ # Ran from local directory
15
+ binDir=$PWD
16
+ fi
17
+ # Resolve symlinks.
18
+ program="$0"
19
+ while [ -L "$program" ]; do
20
+ ls=`/bin/ls -ld "$program"`
21
+ link=`/usr/bin/expr "$ls" : '.*-> \(.*\)$'`
22
+ if /usr/bin/expr "$link" : '.*/.*' > /dev/null; then
23
+ program="$link"
24
+ else
25
+ program="`/usr/bin/dirname $program`/$link"
26
+ fi
27
+ done
28
+ binDir=`dirname $program`
29
+ fi
30
+
31
+ JMOL_HOME=${JMOL_HOME:-$binDir}
32
+ libDir=${JMOL_HOME}/jars
33
+
34
+ if [ ! -e ${JMOL_HOME}/Jmol.jar ]; then
35
+ echo "Jmol could not find its installed files."
36
+ exit
37
+ fi
38
+
39
+ $command -Djmol.home="$JMOL_HOME" -jar ${JMOL_HOME}/Jmol.jar "$@"
@@ -0,0 +1,980 @@
1
+ /*!
2
+ * jQuery Form Plugin
3
+ * version: 2.94 (13-DEC-2011)
4
+ * @requires jQuery v1.3.2 or later
5
+ *
6
+ * Examples and documentation at: http://malsup.com/jquery/form/
7
+ * Dual licensed under the MIT and GPL licenses:
8
+ * http://www.opensource.org/licenses/mit-license.php
9
+ * http://www.gnu.org/licenses/gpl.html
10
+ */
11
+ ;(function($) {
12
+
13
+ /*
14
+ Usage Note:
15
+ -----------
16
+ Do not use both ajaxSubmit and ajaxForm on the same form. These
17
+ functions are intended to be exclusive. Use ajaxSubmit if you want
18
+ to bind your own submit handler to the form. For example,
19
+
20
+ $(document).ready(function() {
21
+ $('#myForm').bind('submit', function(e) {
22
+ e.preventDefault(); // <-- important
23
+ $(this).ajaxSubmit({
24
+ target: '#output'
25
+ });
26
+ });
27
+ });
28
+
29
+ Use ajaxForm when you want the plugin to manage all the event binding
30
+ for you. For example,
31
+
32
+ $(document).ready(function() {
33
+ $('#myForm').ajaxForm({
34
+ target: '#output'
35
+ });
36
+ });
37
+
38
+ When using ajaxForm, the ajaxSubmit function will be invoked for you
39
+ at the appropriate time.
40
+ */
41
+
42
+ /**
43
+ * ajaxSubmit() provides a mechanism for immediately submitting
44
+ * an HTML form using AJAX.
45
+ */
46
+ $.fn.ajaxSubmit = function(options) {
47
+ // fast fail if nothing selected (http://dev.jquery.com/ticket/2752)
48
+ if (!this.length) {
49
+ log('ajaxSubmit: skipping submit process - no element selected');
50
+ return this;
51
+ }
52
+
53
+ var method, action, url, $form = this;
54
+
55
+ if (typeof options == 'function') {
56
+ options = { success: options };
57
+ }
58
+
59
+ method = this.attr('method');
60
+ action = this.attr('action');
61
+ url = (typeof action === 'string') ? $.trim(action) : '';
62
+ url = url || window.location.href || '';
63
+ if (url) {
64
+ // clean url (don't include hash vaue)
65
+ url = (url.match(/^([^#]+)/)||[])[1];
66
+ }
67
+
68
+ options = $.extend(true, {
69
+ url: url,
70
+ success: $.ajaxSettings.success,
71
+ type: method || 'GET',
72
+ iframeSrc: /^https/i.test(window.location.href || '') ? 'javascript:false' : 'about:blank'
73
+ }, options);
74
+
75
+ // hook for manipulating the form data before it is extracted;
76
+ // convenient for use with rich editors like tinyMCE or FCKEditor
77
+ var veto = {};
78
+ this.trigger('form-pre-serialize', [this, options, veto]);
79
+ if (veto.veto) {
80
+ log('ajaxSubmit: submit vetoed via form-pre-serialize trigger');
81
+ return this;
82
+ }
83
+
84
+ // provide opportunity to alter form data before it is serialized
85
+ if (options.beforeSerialize && options.beforeSerialize(this, options) === false) {
86
+ log('ajaxSubmit: submit aborted via beforeSerialize callback');
87
+ return this;
88
+ }
89
+
90
+ var traditional = options.traditional;
91
+ if ( traditional === undefined ) {
92
+ traditional = $.ajaxSettings.traditional;
93
+ }
94
+
95
+ var qx,n,v,a = this.formToArray(options.semantic);
96
+ if (options.data) {
97
+ options.extraData = options.data;
98
+ qx = $.param(options.data, traditional);
99
+ }
100
+
101
+ // give pre-submit callback an opportunity to abort the submit
102
+ if (options.beforeSubmit && options.beforeSubmit(a, this, options) === false) {
103
+ log('ajaxSubmit: submit aborted via beforeSubmit callback');
104
+ return this;
105
+ }
106
+
107
+ // fire vetoable 'validate' event
108
+ this.trigger('form-submit-validate', [a, this, options, veto]);
109
+ if (veto.veto) {
110
+ log('ajaxSubmit: submit vetoed via form-submit-validate trigger');
111
+ return this;
112
+ }
113
+
114
+ var q = $.param(a, traditional);
115
+ if (qx) {
116
+ q = ( q ? (q + '&' + qx) : qx );
117
+ }
118
+ if (options.type.toUpperCase() == 'GET') {
119
+ options.url += (options.url.indexOf('?') >= 0 ? '&' : '?') + q;
120
+ options.data = null; // data is null for 'get'
121
+ }
122
+ else {
123
+ options.data = q; // data is the query string for 'post'
124
+ }
125
+
126
+ var callbacks = [];
127
+ if (options.resetForm) {
128
+ callbacks.push(function() { $form.resetForm(); });
129
+ }
130
+ if (options.clearForm) {
131
+ callbacks.push(function() { $form.clearForm(options.includeHidden); });
132
+ }
133
+
134
+ // perform a load on the target only if dataType is not provided
135
+ if (!options.dataType && options.target) {
136
+ var oldSuccess = options.success || function(){};
137
+ callbacks.push(function(data) {
138
+ var fn = options.replaceTarget ? 'replaceWith' : 'html';
139
+ $(options.target)[fn](data).each(oldSuccess, arguments);
140
+ });
141
+ }
142
+ else if (options.success) {
143
+ callbacks.push(options.success);
144
+ }
145
+
146
+ options.success = function(data, status, xhr) { // jQuery 1.4+ passes xhr as 3rd arg
147
+ var context = options.context || options; // jQuery 1.4+ supports scope context
148
+ for (var i=0, max=callbacks.length; i < max; i++) {
149
+ callbacks[i].apply(context, [data, status, xhr || $form, $form]);
150
+ }
151
+ };
152
+
153
+ // are there files to upload?
154
+ var fileInputs = $('input:file:enabled[value]', this); // [value] (issue #113)
155
+ var hasFileInputs = fileInputs.length > 0;
156
+ var mp = 'multipart/form-data';
157
+ var multipart = ($form.attr('enctype') == mp || $form.attr('encoding') == mp);
158
+
159
+ var fileAPI = !!(hasFileInputs && fileInputs.get(0).files && window.FormData);
160
+ log("fileAPI :" + fileAPI);
161
+ var shouldUseFrame = (hasFileInputs || multipart) && !fileAPI;
162
+
163
+ // options.iframe allows user to force iframe mode
164
+ // 06-NOV-09: now defaulting to iframe mode if file input is detected
165
+ if (options.iframe !== false && (options.iframe || shouldUseFrame)) {
166
+ // hack to fix Safari hang (thanks to Tim Molendijk for this)
167
+ // see: http://groups.google.com/group/jquery-dev/browse_thread/thread/36395b7ab510dd5d
168
+ if (options.closeKeepAlive) {
169
+ $.get(options.closeKeepAlive, function() {
170
+ fileUploadIframe(a);
171
+ });
172
+ }
173
+ else {
174
+ fileUploadIframe(a);
175
+ }
176
+ }
177
+ else if ((hasFileInputs || multipart) && fileAPI) {
178
+ options.progress = options.progress || $.noop;
179
+ fileUploadXhr(a);
180
+ }
181
+ else {
182
+ $.ajax(options);
183
+ }
184
+
185
+ // fire 'notify' event
186
+ this.trigger('form-submit-notify', [this, options]);
187
+ return this;
188
+
189
+ // XMLHttpRequest Level 2 file uploads (big hat tip to francois2metz)
190
+ function fileUploadXhr(a) {
191
+ var formdata = new FormData();
192
+
193
+ for (var i=0; i < a.length; i++) {
194
+ if (a[i].type == 'file')
195
+ continue;
196
+ formdata.append(a[i].name, a[i].value);
197
+ }
198
+
199
+ $form.find('input:file:enabled').each(function(){
200
+ var name = $(this).attr('name'), files = this.files;
201
+ if (name) {
202
+ for (var i=0; i < files.length; i++)
203
+ formdata.append(name, files[i]);
204
+ }
205
+ });
206
+
207
+ if (options.extraData) {
208
+ for (var k in options.extraData)
209
+ formdata.append(k, options.extraData[k])
210
+ }
211
+
212
+ options.data = null;
213
+
214
+ var s = $.extend(true, {}, $.ajaxSettings, options, {
215
+ contentType: false,
216
+ processData: false,
217
+ cache: false,
218
+ type: 'POST'
219
+ });
220
+
221
+ s.context = s.context || s;
222
+
223
+ s.data = null;
224
+ var beforeSend = s.beforeSend;
225
+ s.beforeSend = function(xhr, o) {
226
+ o.data = formdata;
227
+ if(xhr.upload) { // unfortunately, jQuery doesn't expose this prop (http://bugs.jquery.com/ticket/10190)
228
+ xhr.upload.onprogress = function(event) {
229
+ o.progress(event.position, event.total);
230
+ };
231
+ }
232
+ if(beforeSend)
233
+ beforeSend.call(o, xhr, options);
234
+ };
235
+ $.ajax(s);
236
+ }
237
+
238
+ // private function for handling file uploads (hat tip to YAHOO!)
239
+ function fileUploadIframe(a) {
240
+ var form = $form[0], el, i, s, g, id, $io, io, xhr, sub, n, timedOut, timeoutHandle;
241
+ var useProp = !!$.fn.prop;
242
+
243
+ if (a) {
244
+ if ( useProp ) {
245
+ // ensure that every serialized input is still enabled
246
+ for (i=0; i < a.length; i++) {
247
+ el = $(form[a[i].name]);
248
+ el.prop('disabled', false);
249
+ }
250
+ } else {
251
+ for (i=0; i < a.length; i++) {
252
+ el = $(form[a[i].name]);
253
+ el.removeAttr('disabled');
254
+ }
255
+ };
256
+ }
257
+
258
+ if ($(':input[name=submit],:input[id=submit]', form).length) {
259
+ // if there is an input with a name or id of 'submit' then we won't be
260
+ // able to invoke the submit fn on the form (at least not x-browser)
261
+ alert('Error: Form elements must not have name or id of "submit".');
262
+ return;
263
+ }
264
+
265
+ s = $.extend(true, {}, $.ajaxSettings, options);
266
+ s.context = s.context || s;
267
+ id = 'jqFormIO' + (new Date().getTime());
268
+ if (s.iframeTarget) {
269
+ $io = $(s.iframeTarget);
270
+ n = $io.attr('name');
271
+ if (n == null)
272
+ $io.attr('name', id);
273
+ else
274
+ id = n;
275
+ }
276
+ else {
277
+ $io = $('<iframe name="' + id + '" src="'+ s.iframeSrc +'" />');
278
+ $io.css({ position: 'absolute', top: '-1000px', left: '-1000px' });
279
+ }
280
+ io = $io[0];
281
+
282
+
283
+ xhr = { // mock object
284
+ aborted: 0,
285
+ responseText: null,
286
+ responseXML: null,
287
+ status: 0,
288
+ statusText: 'n/a',
289
+ getAllResponseHeaders: function() {},
290
+ getResponseHeader: function() {},
291
+ setRequestHeader: function() {},
292
+ abort: function(status) {
293
+ var e = (status === 'timeout' ? 'timeout' : 'aborted');
294
+ log('aborting upload... ' + e);
295
+ this.aborted = 1;
296
+ $io.attr('src', s.iframeSrc); // abort op in progress
297
+ xhr.error = e;
298
+ s.error && s.error.call(s.context, xhr, e, status);
299
+ g && $.event.trigger("ajaxError", [xhr, s, e]);
300
+ s.complete && s.complete.call(s.context, xhr, e);
301
+ }
302
+ };
303
+
304
+ g = s.global;
305
+ // trigger ajax global events so that activity/block indicators work like normal
306
+ if (g && ! $.active++) {
307
+ $.event.trigger("ajaxStart");
308
+ }
309
+ if (g) {
310
+ $.event.trigger("ajaxSend", [xhr, s]);
311
+ }
312
+
313
+ if (s.beforeSend && s.beforeSend.call(s.context, xhr, s) === false) {
314
+ if (s.global) {
315
+ $.active--;
316
+ }
317
+ return;
318
+ }
319
+ if (xhr.aborted) {
320
+ return;
321
+ }
322
+
323
+ // add submitting element to data if we know it
324
+ sub = form.clk;
325
+ if (sub) {
326
+ n = sub.name;
327
+ if (n && !sub.disabled) {
328
+ s.extraData = s.extraData || {};
329
+ s.extraData[n] = sub.value;
330
+ if (sub.type == "image") {
331
+ s.extraData[n+'.x'] = form.clk_x;
332
+ s.extraData[n+'.y'] = form.clk_y;
333
+ }
334
+ }
335
+ }
336
+
337
+ var CLIENT_TIMEOUT_ABORT = 1;
338
+ var SERVER_ABORT = 2;
339
+
340
+ function getDoc(frame) {
341
+ var doc = frame.contentWindow ? frame.contentWindow.document : frame.contentDocument ? frame.contentDocument : frame.document;
342
+ return doc;
343
+ }
344
+
345
+ // Rails CSRF hack (thanks to Yvan Barthelemy)
346
+ var csrf_token = $('meta[name=csrf-token]').attr('content');
347
+ var csrf_param = $('meta[name=csrf-param]').attr('content');
348
+ if (csrf_param && csrf_token) {
349
+ s.extraData = s.extraData || {};
350
+ s.extraData[csrf_param] = csrf_token;
351
+ }
352
+
353
+ // take a breath so that pending repaints get some cpu time before the upload starts
354
+ function doSubmit() {
355
+ // make sure form attrs are set
356
+ var t = $form.attr('target'), a = $form.attr('action');
357
+
358
+ // update form attrs in IE friendly way
359
+ form.setAttribute('target',id);
360
+ if (!method) {
361
+ form.setAttribute('method', 'POST');
362
+ }
363
+ if (a != s.url) {
364
+ form.setAttribute('action', s.url);
365
+ }
366
+
367
+ // ie borks in some cases when setting encoding
368
+ if (! s.skipEncodingOverride && (!method || /post/i.test(method))) {
369
+ $form.attr({
370
+ encoding: 'multipart/form-data',
371
+ enctype: 'multipart/form-data'
372
+ });
373
+ }
374
+
375
+ // support timout
376
+ if (s.timeout) {
377
+ timeoutHandle = setTimeout(function() { timedOut = true; cb(CLIENT_TIMEOUT_ABORT); }, s.timeout);
378
+ }
379
+
380
+ // look for server aborts
381
+ function checkState() {
382
+ try {
383
+ var state = getDoc(io).readyState;
384
+ log('state = ' + state);
385
+ if (state.toLowerCase() == 'uninitialized')
386
+ setTimeout(checkState,50);
387
+ }
388
+ catch(e) {
389
+ log('Server abort: ' , e, ' (', e.name, ')');
390
+ cb(SERVER_ABORT);
391
+ timeoutHandle && clearTimeout(timeoutHandle);
392
+ timeoutHandle = undefined;
393
+ }
394
+ }
395
+
396
+ // add "extra" data to form if provided in options
397
+ var extraInputs = [];
398
+ try {
399
+ if (s.extraData) {
400
+ for (var n in s.extraData) {
401
+ extraInputs.push(
402
+ $('<input type="hidden" name="'+n+'">').attr('value',s.extraData[n])
403
+ .appendTo(form)[0]);
404
+ }
405
+ }
406
+
407
+ if (!s.iframeTarget) {
408
+ // add iframe to doc and submit the form
409
+ $io.appendTo('body');
410
+ io.attachEvent ? io.attachEvent('onload', cb) : io.addEventListener('load', cb, false);
411
+ }
412
+ setTimeout(checkState,15);
413
+ form.submit();
414
+ }
415
+ finally {
416
+ // reset attrs and remove "extra" input elements
417
+ form.setAttribute('action',a);
418
+ if(t) {
419
+ form.setAttribute('target', t);
420
+ } else {
421
+ $form.removeAttr('target');
422
+ }
423
+ $(extraInputs).remove();
424
+ }
425
+ }
426
+
427
+ if (s.forceSync) {
428
+ doSubmit();
429
+ }
430
+ else {
431
+ setTimeout(doSubmit, 10); // this lets dom updates render
432
+ }
433
+
434
+ var data, doc, domCheckCount = 50, callbackProcessed;
435
+
436
+ function cb(e) {
437
+ if (xhr.aborted || callbackProcessed) {
438
+ return;
439
+ }
440
+ try {
441
+ doc = getDoc(io);
442
+ }
443
+ catch(ex) {
444
+ log('cannot access response document: ', ex);
445
+ e = SERVER_ABORT;
446
+ }
447
+ if (e === CLIENT_TIMEOUT_ABORT && xhr) {
448
+ xhr.abort('timeout');
449
+ return;
450
+ }
451
+ else if (e == SERVER_ABORT && xhr) {
452
+ xhr.abort('server abort');
453
+ return;
454
+ }
455
+
456
+ if (!doc || doc.location.href == s.iframeSrc) {
457
+ // response not received yet
458
+ if (!timedOut)
459
+ return;
460
+ }
461
+ io.detachEvent ? io.detachEvent('onload', cb) : io.removeEventListener('load', cb, false);
462
+
463
+ var status = 'success', errMsg;
464
+ try {
465
+ if (timedOut) {
466
+ throw 'timeout';
467
+ }
468
+
469
+ var isXml = s.dataType == 'xml' || doc.XMLDocument || $.isXMLDoc(doc);
470
+ log('isXml='+isXml);
471
+ if (!isXml && window.opera && (doc.body == null || doc.body.innerHTML == '')) {
472
+ if (--domCheckCount) {
473
+ // in some browsers (Opera) the iframe DOM is not always traversable when
474
+ // the onload callback fires, so we loop a bit to accommodate
475
+ log('requeing onLoad callback, DOM not available');
476
+ setTimeout(cb, 250);
477
+ return;
478
+ }
479
+ // let this fall through because server response could be an empty document
480
+ //log('Could not access iframe DOM after mutiple tries.');
481
+ //throw 'DOMException: not available';
482
+ }
483
+
484
+ //log('response detected');
485
+ var docRoot = doc.body ? doc.body : doc.documentElement;
486
+ xhr.responseText = docRoot ? docRoot.innerHTML : null;
487
+ xhr.responseXML = doc.XMLDocument ? doc.XMLDocument : doc;
488
+ if (isXml)
489
+ s.dataType = 'xml';
490
+ xhr.getResponseHeader = function(header){
491
+ var headers = {'content-type': s.dataType};
492
+ return headers[header];
493
+ };
494
+ // support for XHR 'status' & 'statusText' emulation :
495
+ if (docRoot) {
496
+ xhr.status = Number( docRoot.getAttribute('status') ) || xhr.status;
497
+ xhr.statusText = docRoot.getAttribute('statusText') || xhr.statusText;
498
+ }
499
+
500
+ var dt = (s.dataType || '').toLowerCase();
501
+ var scr = /(json|script|text)/.test(dt);
502
+ if (scr || s.textarea) {
503
+ // see if user embedded response in textarea
504
+ var ta = doc.getElementsByTagName('textarea')[0];
505
+ if (ta) {
506
+ xhr.responseText = ta.value;
507
+ // support for XHR 'status' & 'statusText' emulation :
508
+ xhr.status = Number( ta.getAttribute('status') ) || xhr.status;
509
+ xhr.statusText = ta.getAttribute('statusText') || xhr.statusText;
510
+ }
511
+ else if (scr) {
512
+ // account for browsers injecting pre around json response
513
+ var pre = doc.getElementsByTagName('pre')[0];
514
+ var b = doc.getElementsByTagName('body')[0];
515
+ if (pre) {
516
+ xhr.responseText = pre.textContent ? pre.textContent : pre.innerText;
517
+ }
518
+ else if (b) {
519
+ xhr.responseText = b.textContent ? b.textContent : b.innerText;
520
+ }
521
+ }
522
+ }
523
+ else if (dt == 'xml' && !xhr.responseXML && xhr.responseText != null) {
524
+ xhr.responseXML = toXml(xhr.responseText);
525
+ }
526
+
527
+ try {
528
+ data = httpData(xhr, dt, s);
529
+ }
530
+ catch (e) {
531
+ status = 'parsererror';
532
+ xhr.error = errMsg = (e || status);
533
+ }
534
+ }
535
+ catch (e) {
536
+ log('error caught: ',e);
537
+ status = 'error';
538
+ xhr.error = errMsg = (e || status);
539
+ }
540
+
541
+ if (xhr.aborted) {
542
+ log('upload aborted');
543
+ status = null;
544
+ }
545
+
546
+ if (xhr.status) { // we've set xhr.status
547
+ status = (xhr.status >= 200 && xhr.status < 300 || xhr.status === 304) ? 'success' : 'error';
548
+ }
549
+
550
+ // ordering of these callbacks/triggers is odd, but that's how $.ajax does it
551
+ if (status === 'success') {
552
+ s.success && s.success.call(s.context, data, 'success', xhr);
553
+ g && $.event.trigger("ajaxSuccess", [xhr, s]);
554
+ }
555
+ else if (status) {
556
+ if (errMsg == undefined)
557
+ errMsg = xhr.statusText;
558
+ s.error && s.error.call(s.context, xhr, status, errMsg);
559
+ g && $.event.trigger("ajaxError", [xhr, s, errMsg]);
560
+ }
561
+
562
+ g && $.event.trigger("ajaxComplete", [xhr, s]);
563
+
564
+ if (g && ! --$.active) {
565
+ $.event.trigger("ajaxStop");
566
+ }
567
+
568
+ s.complete && s.complete.call(s.context, xhr, status);
569
+
570
+ callbackProcessed = true;
571
+ if (s.timeout)
572
+ clearTimeout(timeoutHandle);
573
+
574
+ // clean up
575
+ setTimeout(function() {
576
+ if (!s.iframeTarget)
577
+ $io.remove();
578
+ xhr.responseXML = null;
579
+ }, 100);
580
+ }
581
+
582
+ var toXml = $.parseXML || function(s, doc) { // use parseXML if available (jQuery 1.5+)
583
+ if (window.ActiveXObject) {
584
+ doc = new ActiveXObject('Microsoft.XMLDOM');
585
+ doc.async = 'false';
586
+ doc.loadXML(s);
587
+ }
588
+ else {
589
+ doc = (new DOMParser()).parseFromString(s, 'text/xml');
590
+ }
591
+ return (doc && doc.documentElement && doc.documentElement.nodeName != 'parsererror') ? doc : null;
592
+ };
593
+ var parseJSON = $.parseJSON || function(s) {
594
+ return window['eval']('(' + s + ')');
595
+ };
596
+
597
+ var httpData = function( xhr, type, s ) { // mostly lifted from jq1.4.4
598
+
599
+ var ct = xhr.getResponseHeader('content-type') || '',
600
+ xml = type === 'xml' || !type && ct.indexOf('xml') >= 0,
601
+ data = xml ? xhr.responseXML : xhr.responseText;
602
+
603
+ if (xml && data.documentElement.nodeName === 'parsererror') {
604
+ $.error && $.error('parsererror');
605
+ }
606
+ if (s && s.dataFilter) {
607
+ data = s.dataFilter(data, type);
608
+ }
609
+ if (typeof data === 'string') {
610
+ if (type === 'json' || !type && ct.indexOf('json') >= 0) {
611
+ data = parseJSON(data);
612
+ } else if (type === "script" || !type && ct.indexOf("javascript") >= 0) {
613
+ $.globalEval(data);
614
+ }
615
+ }
616
+ return data;
617
+ };
618
+ }
619
+ };
620
+
621
+ /**
622
+ * ajaxForm() provides a mechanism for fully automating form submission.
623
+ *
624
+ * The advantages of using this method instead of ajaxSubmit() are:
625
+ *
626
+ * 1: This method will include coordinates for <input type="image" /> elements (if the element
627
+ * is used to submit the form).
628
+ * 2. This method will include the submit element's name/value data (for the element that was
629
+ * used to submit the form).
630
+ * 3. This method binds the submit() method to the form for you.
631
+ *
632
+ * The options argument for ajaxForm works exactly as it does for ajaxSubmit. ajaxForm merely
633
+ * passes the options argument along after properly binding events for submit elements and
634
+ * the form itself.
635
+ */
636
+ $.fn.ajaxForm = function(options) {
637
+ // in jQuery 1.3+ we can fix mistakes with the ready state
638
+ if (this.length === 0) {
639
+ var o = { s: this.selector, c: this.context };
640
+ if (!$.isReady && o.s) {
641
+ log('DOM not ready, queuing ajaxForm');
642
+ $(function() {
643
+ $(o.s,o.c).ajaxForm(options);
644
+ });
645
+ return this;
646
+ }
647
+ // is your DOM ready? http://docs.jquery.com/Tutorials:Introducing_$(document).ready()
648
+ log('terminating; zero elements found by selector' + ($.isReady ? '' : ' (DOM not ready)'));
649
+ return this;
650
+ }
651
+
652
+ return this.ajaxFormUnbind().bind('submit.form-plugin', function(e) {
653
+ if (!e.isDefaultPrevented()) { // if event has been canceled, don't proceed
654
+ e.preventDefault();
655
+ $(this).ajaxSubmit(options);
656
+ }
657
+ }).bind('click.form-plugin', function(e) {
658
+ var target = e.target;
659
+ var $el = $(target);
660
+ if (!($el.is(":submit,input:image"))) {
661
+ // is this a child element of the submit el? (ex: a span within a button)
662
+ var t = $el.closest(':submit');
663
+ if (t.length == 0) {
664
+ return;
665
+ }
666
+ target = t[0];
667
+ }
668
+ var form = this;
669
+ form.clk = target;
670
+ if (target.type == 'image') {
671
+ if (e.offsetX != undefined) {
672
+ form.clk_x = e.offsetX;
673
+ form.clk_y = e.offsetY;
674
+ } else if (typeof $.fn.offset == 'function') { // try to use dimensions plugin
675
+ var offset = $el.offset();
676
+ form.clk_x = e.pageX - offset.left;
677
+ form.clk_y = e.pageY - offset.top;
678
+ } else {
679
+ form.clk_x = e.pageX - target.offsetLeft;
680
+ form.clk_y = e.pageY - target.offsetTop;
681
+ }
682
+ }
683
+ // clear form vars
684
+ setTimeout(function() { form.clk = form.clk_x = form.clk_y = null; }, 100);
685
+ });
686
+ };
687
+
688
+ // ajaxFormUnbind unbinds the event handlers that were bound by ajaxForm
689
+ $.fn.ajaxFormUnbind = function() {
690
+ return this.unbind('submit.form-plugin click.form-plugin');
691
+ };
692
+
693
+ /**
694
+ * formToArray() gathers form element data into an array of objects that can
695
+ * be passed to any of the following ajax functions: $.get, $.post, or load.
696
+ * Each object in the array has both a 'name' and 'value' property. An example of
697
+ * an array for a simple login form might be:
698
+ *
699
+ * [ { name: 'username', value: 'jresig' }, { name: 'password', value: 'secret' } ]
700
+ *
701
+ * It is this array that is passed to pre-submit callback functions provided to the
702
+ * ajaxSubmit() and ajaxForm() methods.
703
+ */
704
+ $.fn.formToArray = function(semantic) {
705
+ var a = [];
706
+ if (this.length === 0) {
707
+ return a;
708
+ }
709
+
710
+ var form = this[0];
711
+ var els = semantic ? form.getElementsByTagName('*') : form.elements;
712
+ if (!els) {
713
+ return a;
714
+ }
715
+
716
+ var i,j,n,v,el,max,jmax;
717
+ for(i=0, max=els.length; i < max; i++) {
718
+ el = els[i];
719
+ n = el.name;
720
+ if (!n) {
721
+ continue;
722
+ }
723
+
724
+ if (semantic && form.clk && el.type == "image") {
725
+ // handle image inputs on the fly when semantic == true
726
+ if(!el.disabled && form.clk == el) {
727
+ a.push({name: n, value: $(el).val(), type: el.type });
728
+ a.push({name: n+'.x', value: form.clk_x}, {name: n+'.y', value: form.clk_y});
729
+ }
730
+ continue;
731
+ }
732
+
733
+ v = $.fieldValue(el, true);
734
+ if (v && v.constructor == Array) {
735
+ for(j=0, jmax=v.length; j < jmax; j++) {
736
+ a.push({name: n, value: v[j]});
737
+ }
738
+ }
739
+ else if (v !== null && typeof v != 'undefined') {
740
+ a.push({name: n, value: v, type: el.type});
741
+ }
742
+ }
743
+
744
+ if (!semantic && form.clk) {
745
+ // input type=='image' are not found in elements array! handle it here
746
+ var $input = $(form.clk), input = $input[0];
747
+ n = input.name;
748
+ if (n && !input.disabled && input.type == 'image') {
749
+ a.push({name: n, value: $input.val()});
750
+ a.push({name: n+'.x', value: form.clk_x}, {name: n+'.y', value: form.clk_y});
751
+ }
752
+ }
753
+ return a;
754
+ };
755
+
756
+ /**
757
+ * Serializes form data into a 'submittable' string. This method will return a string
758
+ * in the format: name1=value1&amp;name2=value2
759
+ */
760
+ $.fn.formSerialize = function(semantic) {
761
+ //hand off to jQuery.param for proper encoding
762
+ return $.param(this.formToArray(semantic));
763
+ };
764
+
765
+ /**
766
+ * Serializes all field elements in the jQuery object into a query string.
767
+ * This method will return a string in the format: name1=value1&amp;name2=value2
768
+ */
769
+ $.fn.fieldSerialize = function(successful) {
770
+ var a = [];
771
+ this.each(function() {
772
+ var n = this.name;
773
+ if (!n) {
774
+ return;
775
+ }
776
+ var v = $.fieldValue(this, successful);
777
+ if (v && v.constructor == Array) {
778
+ for (var i=0,max=v.length; i < max; i++) {
779
+ a.push({name: n, value: v[i]});
780
+ }
781
+ }
782
+ else if (v !== null && typeof v != 'undefined') {
783
+ a.push({name: this.name, value: v});
784
+ }
785
+ });
786
+ //hand off to jQuery.param for proper encoding
787
+ return $.param(a);
788
+ };
789
+
790
+ /**
791
+ * Returns the value(s) of the element in the matched set. For example, consider the following form:
792
+ *
793
+ * <form><fieldset>
794
+ * <input name="A" type="text" />
795
+ * <input name="A" type="text" />
796
+ * <input name="B" type="checkbox" value="B1" />
797
+ * <input name="B" type="checkbox" value="B2"/>
798
+ * <input name="C" type="radio" value="C1" />
799
+ * <input name="C" type="radio" value="C2" />
800
+ * </fieldset></form>
801
+ *
802
+ * var v = $(':text').fieldValue();
803
+ * // if no values are entered into the text inputs
804
+ * v == ['','']
805
+ * // if values entered into the text inputs are 'foo' and 'bar'
806
+ * v == ['foo','bar']
807
+ *
808
+ * var v = $(':checkbox').fieldValue();
809
+ * // if neither checkbox is checked
810
+ * v === undefined
811
+ * // if both checkboxes are checked
812
+ * v == ['B1', 'B2']
813
+ *
814
+ * var v = $(':radio').fieldValue();
815
+ * // if neither radio is checked
816
+ * v === undefined
817
+ * // if first radio is checked
818
+ * v == ['C1']
819
+ *
820
+ * The successful argument controls whether or not the field element must be 'successful'
821
+ * (per http://www.w3.org/TR/html4/interact/forms.html#successful-controls).
822
+ * The default value of the successful argument is true. If this value is false the value(s)
823
+ * for each element is returned.
824
+ *
825
+ * Note: This method *always* returns an array. If no valid value can be determined the
826
+ * array will be empty, otherwise it will contain one or more values.
827
+ */
828
+ $.fn.fieldValue = function(successful) {
829
+ for (var val=[], i=0, max=this.length; i < max; i++) {
830
+ var el = this[i];
831
+ var v = $.fieldValue(el, successful);
832
+ if (v === null || typeof v == 'undefined' || (v.constructor == Array && !v.length)) {
833
+ continue;
834
+ }
835
+ v.constructor == Array ? $.merge(val, v) : val.push(v);
836
+ }
837
+ return val;
838
+ };
839
+
840
+ /**
841
+ * Returns the value of the field element.
842
+ */
843
+ $.fieldValue = function(el, successful) {
844
+ var n = el.name, t = el.type, tag = el.tagName.toLowerCase();
845
+ if (successful === undefined) {
846
+ successful = true;
847
+ }
848
+
849
+ if (successful && (!n || el.disabled || t == 'reset' || t == 'button' ||
850
+ (t == 'checkbox' || t == 'radio') && !el.checked ||
851
+ (t == 'submit' || t == 'image') && el.form && el.form.clk != el ||
852
+ tag == 'select' && el.selectedIndex == -1)) {
853
+ return null;
854
+ }
855
+
856
+ if (tag == 'select') {
857
+ var index = el.selectedIndex;
858
+ if (index < 0) {
859
+ return null;
860
+ }
861
+ var a = [], ops = el.options;
862
+ var one = (t == 'select-one');
863
+ var max = (one ? index+1 : ops.length);
864
+ for(var i=(one ? index : 0); i < max; i++) {
865
+ var op = ops[i];
866
+ if (op.selected) {
867
+ var v = op.value;
868
+ if (!v) { // extra pain for IE...
869
+ v = (op.attributes && op.attributes['value'] && !(op.attributes['value'].specified)) ? op.text : op.value;
870
+ }
871
+ if (one) {
872
+ return v;
873
+ }
874
+ a.push(v);
875
+ }
876
+ }
877
+ return a;
878
+ }
879
+ return $(el).val();
880
+ };
881
+
882
+ /**
883
+ * Clears the form data. Takes the following actions on the form's input fields:
884
+ * - input text fields will have their 'value' property set to the empty string
885
+ * - select elements will have their 'selectedIndex' property set to -1
886
+ * - checkbox and radio inputs will have their 'checked' property set to false
887
+ * - inputs of type submit, button, reset, and hidden will *not* be effected
888
+ * - button elements will *not* be effected
889
+ */
890
+ $.fn.clearForm = function(includeHidden) {
891
+ return this.each(function() {
892
+ $('input,select,textarea', this).clearFields(includeHidden);
893
+ });
894
+ };
895
+
896
+ /**
897
+ * Clears the selected form elements.
898
+ */
899
+ $.fn.clearFields = $.fn.clearInputs = function(includeHidden) {
900
+ var re = /^(?:color|date|datetime|email|month|number|password|range|search|tel|text|time|url|week)$/i; // 'hidden' is not in this list
901
+ return this.each(function() {
902
+ var t = this.type, tag = this.tagName.toLowerCase();
903
+ if (re.test(t) || tag == 'textarea' || (includeHidden && /hidden/.test(t)) ) {
904
+ this.value = '';
905
+ }
906
+ else if (t == 'checkbox' || t == 'radio') {
907
+ this.checked = false;
908
+ }
909
+ else if (tag == 'select') {
910
+ this.selectedIndex = -1;
911
+ }
912
+ });
913
+ };
914
+
915
+ /**
916
+ * Resets the form data. Causes all form elements to be reset to their original value.
917
+ */
918
+ $.fn.resetForm = function() {
919
+ return this.each(function() {
920
+ // guard against an input with the name of 'reset'
921
+ // note that IE reports the reset function as an 'object'
922
+ if (typeof this.reset == 'function' || (typeof this.reset == 'object' && !this.reset.nodeType)) {
923
+ this.reset();
924
+ }
925
+ });
926
+ };
927
+
928
+ /**
929
+ * Enables or disables any matching elements.
930
+ */
931
+ $.fn.enable = function(b) {
932
+ if (b === undefined) {
933
+ b = true;
934
+ }
935
+ return this.each(function() {
936
+ this.disabled = !b;
937
+ });
938
+ };
939
+
940
+ /**
941
+ * Checks/unchecks any matching checkboxes or radio buttons and
942
+ * selects/deselects and matching option elements.
943
+ */
944
+ $.fn.selected = function(select) {
945
+ if (select === undefined) {
946
+ select = true;
947
+ }
948
+ return this.each(function() {
949
+ var t = this.type;
950
+ if (t == 'checkbox' || t == 'radio') {
951
+ this.checked = select;
952
+ }
953
+ else if (this.tagName.toLowerCase() == 'option') {
954
+ var $sel = $(this).parent('select');
955
+ if (select && $sel[0] && $sel[0].type == 'select-one') {
956
+ // deselect all other options
957
+ $sel.find('option').selected(false);
958
+ }
959
+ this.selected = select;
960
+ }
961
+ });
962
+ };
963
+
964
+ // expose debug var
965
+ $.fn.ajaxSubmit.debug = false;
966
+
967
+ // helper fn for console logging
968
+ function log() {
969
+ if (!$.fn.ajaxSubmit.debug)
970
+ return;
971
+ var msg = '[jquery.form] ' + Array.prototype.join.call(arguments,'');
972
+ if (window.console && window.console.log) {
973
+ window.console.log(msg);
974
+ }
975
+ else if (window.opera && window.opera.postError) {
976
+ window.opera.postError(msg);
977
+ }
978
+ };
979
+
980
+ })(jQuery);