rbbt-marq 1.0.0

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  1. data/LICENSE +20 -0
  2. data/R/CustomDS.R +80 -0
  3. data/R/GEO.R +249 -0
  4. data/R/MA.R +359 -0
  5. data/README.rdoc +58 -0
  6. data/bin/marq_config +209 -0
  7. data/install_scripts/CustomDS/Rakefile +223 -0
  8. data/install_scripts/GEO/Rakefile +272 -0
  9. data/install_scripts/GEO/platforms/GPL100.yaml +7 -0
  10. data/install_scripts/GEO/platforms/GPL1002.yaml +7 -0
  11. data/install_scripts/GEO/platforms/GPL1007.yaml +7 -0
  12. data/install_scripts/GEO/platforms/GPL101.yaml +7 -0
  13. data/install_scripts/GEO/platforms/GPL1010.yaml +7 -0
  14. data/install_scripts/GEO/platforms/GPL1073.yaml +7 -0
  15. data/install_scripts/GEO/platforms/GPL1074.yaml +4 -0
  16. data/install_scripts/GEO/platforms/GPL1090.yaml +7 -0
  17. data/install_scripts/GEO/platforms/GPL1104.yaml +7 -0
  18. data/install_scripts/GEO/platforms/GPL118.yaml +7 -0
  19. data/install_scripts/GEO/platforms/GPL1205.yaml +4 -0
  20. data/install_scripts/GEO/platforms/GPL1211.yaml +7 -0
  21. data/install_scripts/GEO/platforms/GPL1213.yaml +7 -0
  22. data/install_scripts/GEO/platforms/GPL1219.yaml +4 -0
  23. data/install_scripts/GEO/platforms/GPL1223.yaml +7 -0
  24. data/install_scripts/GEO/platforms/GPL1226.yaml +7 -0
  25. data/install_scripts/GEO/platforms/GPL1229.yaml +7 -0
  26. data/install_scripts/GEO/platforms/GPL1230.yaml +7 -0
  27. data/install_scripts/GEO/platforms/GPL1231.yaml +7 -0
  28. data/install_scripts/GEO/platforms/GPL1232.yaml +7 -0
  29. data/install_scripts/GEO/platforms/GPL1260.yaml +4 -0
  30. data/install_scripts/GEO/platforms/GPL1261.yaml +4 -0
  31. data/install_scripts/GEO/platforms/GPL127.yaml +4 -0
  32. data/install_scripts/GEO/platforms/GPL128.yaml +7 -0
  33. data/install_scripts/GEO/platforms/GPL1290.yaml +7 -0
  34. data/install_scripts/GEO/platforms/GPL1292.yaml +7 -0
  35. data/install_scripts/GEO/platforms/GPL1293.yaml +7 -0
  36. data/install_scripts/GEO/platforms/GPL1294.yaml +7 -0
  37. data/install_scripts/GEO/platforms/GPL1295.yaml +7 -0
  38. data/install_scripts/GEO/platforms/GPL13.yaml +4 -0
  39. data/install_scripts/GEO/platforms/GPL1310.yaml +7 -0
  40. data/install_scripts/GEO/platforms/GPL1313.yaml +7 -0
  41. data/install_scripts/GEO/platforms/GPL1323.yaml +7 -0
  42. data/install_scripts/GEO/platforms/GPL1331.yaml +7 -0
  43. data/install_scripts/GEO/platforms/GPL1352.yaml +4 -0
  44. data/install_scripts/GEO/platforms/GPL1355.yaml +4 -0
  45. data/install_scripts/GEO/platforms/GPL1382.yaml +7 -0
  46. data/install_scripts/GEO/platforms/GPL1387.yaml +7 -0
  47. data/install_scripts/GEO/platforms/GPL1397.yaml +4 -0
  48. data/install_scripts/GEO/platforms/GPL14.yaml +7 -0
  49. data/install_scripts/GEO/platforms/GPL1412.yaml +7 -0
  50. data/install_scripts/GEO/platforms/GPL1415.yaml +7 -0
  51. data/install_scripts/GEO/platforms/GPL1420.yaml +7 -0
  52. data/install_scripts/GEO/platforms/GPL144.yaml +7 -0
  53. data/install_scripts/GEO/platforms/GPL1449.yaml +7 -0
  54. data/install_scripts/GEO/platforms/GPL1458.yaml +7 -0
  55. data/install_scripts/GEO/platforms/GPL1523.yaml +7 -0
  56. data/install_scripts/GEO/platforms/GPL1524.yaml +7 -0
  57. data/install_scripts/GEO/platforms/GPL1528.yaml +7 -0
  58. data/install_scripts/GEO/platforms/GPL153.yaml +7 -0
  59. data/install_scripts/GEO/platforms/GPL1530.yaml +7 -0
  60. data/install_scripts/GEO/platforms/GPL1535.yaml +4 -0
  61. data/install_scripts/GEO/platforms/GPL155.yaml +7 -0
  62. data/install_scripts/GEO/platforms/GPL163.yaml +7 -0
  63. data/install_scripts/GEO/platforms/GPL168.yaml +7 -0
  64. data/install_scripts/GEO/platforms/GPL169.yaml +7 -0
  65. data/install_scripts/GEO/platforms/GPL1704.yaml +4 -0
  66. data/install_scripts/GEO/platforms/GPL1708.yaml +7 -0
  67. data/install_scripts/GEO/platforms/GPL1739.yaml +7 -0
  68. data/install_scripts/GEO/platforms/GPL1740.yaml +4 -0
  69. data/install_scripts/GEO/platforms/GPL1749.yaml +7 -0
  70. data/install_scripts/GEO/platforms/GPL177.yaml +7 -0
  71. data/install_scripts/GEO/platforms/GPL1790.yaml +7 -0
  72. data/install_scripts/GEO/platforms/GPL1792.yaml +7 -0
  73. data/install_scripts/GEO/platforms/GPL181.yaml +7 -0
  74. data/install_scripts/GEO/platforms/GPL1818.yaml +7 -0
  75. data/install_scripts/GEO/platforms/GPL1820.yaml +4 -0
  76. data/install_scripts/GEO/platforms/GPL1823.yaml +7 -0
  77. data/install_scripts/GEO/platforms/GPL1826.yaml +7 -0
  78. data/install_scripts/GEO/platforms/GPL183.yaml +7 -0
  79. data/install_scripts/GEO/platforms/GPL1831.yaml +7 -0
  80. data/install_scripts/GEO/platforms/GPL1833.yaml +7 -0
  81. data/install_scripts/GEO/platforms/GPL1872.yaml +4 -0
  82. data/install_scripts/GEO/platforms/GPL1911.yaml +7 -0
  83. data/install_scripts/GEO/platforms/GPL1914.yaml +4 -0
  84. data/install_scripts/GEO/platforms/GPL1928.yaml +7 -0
  85. data/install_scripts/GEO/platforms/GPL1942.yaml +7 -0
  86. data/install_scripts/GEO/platforms/GPL1945.yaml +7 -0
  87. data/install_scripts/GEO/platforms/GPL1964.yaml +7 -0
  88. data/install_scripts/GEO/platforms/GPL198.yaml +4 -0
  89. data/install_scripts/GEO/platforms/GPL1981.yaml +4 -0
  90. data/install_scripts/GEO/platforms/GPL200.yaml +7 -0
  91. data/install_scripts/GEO/platforms/GPL2006.yaml +7 -0
  92. data/install_scripts/GEO/platforms/GPL201.yaml +4 -0
  93. data/install_scripts/GEO/platforms/GPL2011.yaml +7 -0
  94. data/install_scripts/GEO/platforms/GPL2026.yaml +7 -0
  95. data/install_scripts/GEO/platforms/GPL205.yaml +7 -0
  96. data/install_scripts/GEO/platforms/GPL207.yaml +7 -0
  97. data/install_scripts/GEO/platforms/GPL2136.yaml +7 -0
  98. data/install_scripts/GEO/platforms/GPL220.yaml +7 -0
  99. data/install_scripts/GEO/platforms/GPL226.yaml +7 -0
  100. data/install_scripts/GEO/platforms/GPL24.yaml +4 -0
  101. data/install_scripts/GEO/platforms/GPL246.yaml +4 -0
  102. data/install_scripts/GEO/platforms/GPL247.yaml +7 -0
  103. data/install_scripts/GEO/platforms/GPL2507.yaml +4 -0
  104. data/install_scripts/GEO/platforms/GPL2529.yaml +4 -0
  105. data/install_scripts/GEO/platforms/GPL2531.yaml +7 -0
  106. data/install_scripts/GEO/platforms/GPL254.yaml +7 -0
  107. data/install_scripts/GEO/platforms/GPL2569.yaml +7 -0
  108. data/install_scripts/GEO/platforms/GPL257.yaml +7 -0
  109. data/install_scripts/GEO/platforms/GPL2598.yaml +7 -0
  110. data/install_scripts/GEO/platforms/GPL260.yaml +7 -0
  111. data/install_scripts/GEO/platforms/GPL2614.yaml +4 -0
  112. data/install_scripts/GEO/platforms/GPL2622.yaml +7 -0
  113. data/install_scripts/GEO/platforms/GPL2623.yaml +7 -0
  114. data/install_scripts/GEO/platforms/GPL2660.yaml +7 -0
  115. data/install_scripts/GEO/platforms/GPL2670.yaml +7 -0
  116. data/install_scripts/GEO/platforms/GPL2677.yaml +7 -0
  117. data/install_scripts/GEO/platforms/GPL2700.yaml +4 -0
  118. data/install_scripts/GEO/platforms/GPL2721.yaml +7 -0
  119. data/install_scripts/GEO/platforms/GPL2727.yaml +7 -0
  120. data/install_scripts/GEO/platforms/GPL273.yaml +7 -0
  121. data/install_scripts/GEO/platforms/GPL2763.yaml +7 -0
  122. data/install_scripts/GEO/platforms/GPL2824.yaml +7 -0
  123. data/install_scripts/GEO/platforms/GPL284.yaml +7 -0
  124. data/install_scripts/GEO/platforms/GPL287.yaml +4 -0
  125. data/install_scripts/GEO/platforms/GPL2872.yaml +7 -0
  126. data/install_scripts/GEO/platforms/GPL288.yaml +4 -0
  127. data/install_scripts/GEO/platforms/GPL2883.yaml +7 -0
  128. data/install_scripts/GEO/platforms/GPL289.yaml +4 -0
  129. data/install_scripts/GEO/platforms/GPL2895.yaml +4 -0
  130. data/install_scripts/GEO/platforms/GPL2897.yaml +7 -0
  131. data/install_scripts/GEO/platforms/GPL2902.yaml +7 -0
  132. data/install_scripts/GEO/platforms/GPL2987.yaml +4 -0
  133. data/install_scripts/GEO/platforms/GPL2995.yaml +7 -0
  134. data/install_scripts/GEO/platforms/GPL3039.yaml +4 -0
  135. data/install_scripts/GEO/platforms/GPL3050.yaml +7 -0
  136. data/install_scripts/GEO/platforms/GPL3084.yaml +7 -0
  137. data/install_scripts/GEO/platforms/GPL3113.yaml +7 -0
  138. data/install_scripts/GEO/platforms/GPL317.yaml +7 -0
  139. data/install_scripts/GEO/platforms/GPL319.yaml +7 -0
  140. data/install_scripts/GEO/platforms/GPL32.yaml +4 -0
  141. data/install_scripts/GEO/platforms/GPL3222.yaml +7 -0
  142. data/install_scripts/GEO/platforms/GPL3295.yaml +7 -0
  143. data/install_scripts/GEO/platforms/GPL3305.yaml +4 -0
  144. data/install_scripts/GEO/platforms/GPL3306.yaml +7 -0
  145. data/install_scripts/GEO/platforms/GPL3307.yaml +7 -0
  146. data/install_scripts/GEO/platforms/GPL333.yaml +4 -0
  147. data/install_scripts/GEO/platforms/GPL3341.yaml +7 -0
  148. data/install_scripts/GEO/platforms/GPL3349.yaml +7 -0
  149. data/install_scripts/GEO/platforms/GPL339.yaml +4 -0
  150. data/install_scripts/GEO/platforms/GPL340.yaml +4 -0
  151. data/install_scripts/GEO/platforms/GPL3408.yaml +7 -0
  152. data/install_scripts/GEO/platforms/GPL341.yaml +4 -0
  153. data/install_scripts/GEO/platforms/GPL3415.yaml +4 -0
  154. data/install_scripts/GEO/platforms/GPL3423.yaml +7 -0
  155. data/install_scripts/GEO/platforms/GPL3440.yaml +7 -0
  156. data/install_scripts/GEO/platforms/GPL3457.yaml +4 -0
  157. data/install_scripts/GEO/platforms/GPL3504.yaml +4 -0
  158. data/install_scripts/GEO/platforms/GPL3506.yaml +4 -0
  159. data/install_scripts/GEO/platforms/GPL355.yaml +7 -0
  160. data/install_scripts/GEO/platforms/GPL3558.yaml +7 -0
  161. data/install_scripts/GEO/platforms/GPL3607.yaml +7 -0
  162. data/install_scripts/GEO/platforms/GPL368.yaml +4 -0
  163. data/install_scripts/GEO/platforms/GPL3695.yaml +7 -0
  164. data/install_scripts/GEO/platforms/GPL371.yaml +7 -0
  165. data/install_scripts/GEO/platforms/GPL3834.yaml +4 -0
  166. data/install_scripts/GEO/platforms/GPL4006.yaml +7 -0
  167. data/install_scripts/GEO/platforms/GPL4055.yaml +7 -0
  168. data/install_scripts/GEO/platforms/GPL409.yaml +7 -0
  169. data/install_scripts/GEO/platforms/GPL4191.yaml +7 -0
  170. data/install_scripts/GEO/platforms/GPL4226.yaml +7 -0
  171. data/install_scripts/GEO/platforms/GPL4371.yaml +7 -0
  172. data/install_scripts/GEO/platforms/GPL4567.yaml +4 -0
  173. data/install_scripts/GEO/platforms/GPL4685.yaml +4 -0
  174. data/install_scripts/GEO/platforms/GPL483.yaml +7 -0
  175. data/install_scripts/GEO/platforms/GPL49.yaml +7 -0
  176. data/install_scripts/GEO/platforms/GPL50.yaml +7 -0
  177. data/install_scripts/GEO/platforms/GPL500.yaml +7 -0
  178. data/install_scripts/GEO/platforms/GPL507.yaml +4 -0
  179. data/install_scripts/GEO/platforms/GPL51.yaml +7 -0
  180. data/install_scripts/GEO/platforms/GPL513.yaml +7 -0
  181. data/install_scripts/GEO/platforms/GPL519.yaml +7 -0
  182. data/install_scripts/GEO/platforms/GPL52.yaml +7 -0
  183. data/install_scripts/GEO/platforms/GPL529.yaml +7 -0
  184. data/install_scripts/GEO/platforms/GPL53.yaml +7 -0
  185. data/install_scripts/GEO/platforms/GPL5356.yaml +7 -0
  186. data/install_scripts/GEO/platforms/GPL538.yaml +7 -0
  187. data/install_scripts/GEO/platforms/GPL54.yaml +7 -0
  188. data/install_scripts/GEO/platforms/GPL543.yaml +7 -0
  189. data/install_scripts/GEO/platforms/GPL544.yaml +7 -0
  190. data/install_scripts/GEO/platforms/GPL545.yaml +7 -0
  191. data/install_scripts/GEO/platforms/GPL546.yaml +7 -0
  192. data/install_scripts/GEO/platforms/GPL547.yaml +7 -0
  193. data/install_scripts/GEO/platforms/GPL549.yaml +7 -0
  194. data/install_scripts/GEO/platforms/GPL550.yaml +4 -0
  195. data/install_scripts/GEO/platforms/GPL56.yaml +7 -0
  196. data/install_scripts/GEO/platforms/GPL560.yaml +4 -0
  197. data/install_scripts/GEO/platforms/GPL564.yaml +7 -0
  198. data/install_scripts/GEO/platforms/GPL57.yaml +7 -0
  199. data/install_scripts/GEO/platforms/GPL570.yaml +4 -0
  200. data/install_scripts/GEO/platforms/GPL571.yaml +4 -0
  201. data/install_scripts/GEO/platforms/GPL576.yaml +7 -0
  202. data/install_scripts/GEO/platforms/GPL58.yaml +7 -0
  203. data/install_scripts/GEO/platforms/GPL5823.yaml +4 -0
  204. data/install_scripts/GEO/platforms/GPL59.yaml +7 -0
  205. data/install_scripts/GEO/platforms/GPL5915.yaml +4 -0
  206. data/install_scripts/GEO/platforms/GPL5947.yaml +7 -0
  207. data/install_scripts/GEO/platforms/GPL61.yaml +7 -0
  208. data/install_scripts/GEO/platforms/GPL64.yaml +7 -0
  209. data/install_scripts/GEO/platforms/GPL6419.yaml +7 -0
  210. data/install_scripts/GEO/platforms/GPL6424.yaml +7 -0
  211. data/install_scripts/GEO/platforms/GPL65.yaml +7 -0
  212. data/install_scripts/GEO/platforms/GPL6574.yaml +4 -0
  213. data/install_scripts/GEO/platforms/GPL6649.yaml +4 -0
  214. data/install_scripts/GEO/platforms/GPL67.yaml +7 -0
  215. data/install_scripts/GEO/platforms/GPL6720.yaml +7 -0
  216. data/install_scripts/GEO/platforms/GPL7054.yaml +4 -0
  217. data/install_scripts/GEO/platforms/GPL737.yaml +7 -0
  218. data/install_scripts/GEO/platforms/GPL738.yaml +7 -0
  219. data/install_scripts/GEO/platforms/GPL74.yaml +4 -0
  220. data/install_scripts/GEO/platforms/GPL75.yaml +4 -0
  221. data/install_scripts/GEO/platforms/GPL76.yaml +4 -0
  222. data/install_scripts/GEO/platforms/GPL764.yaml +7 -0
  223. data/install_scripts/GEO/platforms/GPL772.yaml +7 -0
  224. data/install_scripts/GEO/platforms/GPL782.yaml +7 -0
  225. data/install_scripts/GEO/platforms/GPL783.yaml +7 -0
  226. data/install_scripts/GEO/platforms/GPL784.yaml +7 -0
  227. data/install_scripts/GEO/platforms/GPL80.yaml +4 -0
  228. data/install_scripts/GEO/platforms/GPL81.yaml +4 -0
  229. data/install_scripts/GEO/platforms/GPL82.yaml +4 -0
  230. data/install_scripts/GEO/platforms/GPL83.yaml +4 -0
  231. data/install_scripts/GEO/platforms/GPL85.yaml +4 -0
  232. data/install_scripts/GEO/platforms/GPL86.yaml +4 -0
  233. data/install_scripts/GEO/platforms/GPL87.yaml +4 -0
  234. data/install_scripts/GEO/platforms/GPL870.yaml +7 -0
  235. data/install_scripts/GEO/platforms/GPL875.yaml +7 -0
  236. data/install_scripts/GEO/platforms/GPL884.yaml +7 -0
  237. data/install_scripts/GEO/platforms/GPL887.yaml +7 -0
  238. data/install_scripts/GEO/platforms/GPL89.yaml +4 -0
  239. data/install_scripts/GEO/platforms/GPL890.yaml +7 -0
  240. data/install_scripts/GEO/platforms/GPL891.yaml +7 -0
  241. data/install_scripts/GEO/platforms/GPL90.yaml +7 -0
  242. data/install_scripts/GEO/platforms/GPL91.yaml +4 -0
  243. data/install_scripts/GEO/platforms/GPL92.yaml +4 -0
  244. data/install_scripts/GEO/platforms/GPL920.yaml +7 -0
  245. data/install_scripts/GEO/platforms/GPL922.yaml +7 -0
  246. data/install_scripts/GEO/platforms/GPL924.yaml +7 -0
  247. data/install_scripts/GEO/platforms/GPL93.yaml +4 -0
  248. data/install_scripts/GEO/platforms/GPL96.yaml +4 -0
  249. data/install_scripts/GEO/platforms/GPL968.yaml +4 -0
  250. data/install_scripts/GEO/platforms/GPL97.yaml +4 -0
  251. data/install_scripts/GEO/platforms/GPL98.yaml +7 -0
  252. data/install_scripts/GEO/platforms/GPL981.yaml +7 -0
  253. data/install_scripts/GEO/platforms/GPL99.yaml +7 -0
  254. data/install_scripts/GEO/platforms/GPL999.yaml +7 -0
  255. data/install_scripts/GEO/series/GSE10018.yaml +61 -0
  256. data/install_scripts/GEO/series/GSE1002.yaml +135 -0
  257. data/install_scripts/GEO/series/GSE10066.yaml +31 -0
  258. data/install_scripts/GEO/series/GSE10073.yaml +19 -0
  259. data/install_scripts/GEO/series/GSE10091.yaml +15 -0
  260. data/install_scripts/GEO/series/GSE101.yaml +17 -0
  261. data/install_scripts/GEO/series/GSE10100.yaml +15 -0
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  267. data/install_scripts/GEO/series/GSE103.yaml +19 -0
  268. data/install_scripts/GEO/series/GSE104.yaml +19 -0
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  270. data/install_scripts/GEO/series/GSE10521.yaml +56 -0
  271. data/install_scripts/GEO/series/GSE10554.yaml +19 -0
  272. data/install_scripts/GEO/series/GSE1073.yaml +127 -0
  273. data/install_scripts/GEO/series/GSE10860.yaml +25 -0
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  296. data/install_scripts/GEO/series/GSE11983.yaml +15 -0
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  298. data/install_scripts/GEO/series/GSE12055.yaml +109 -0
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  300. data/install_scripts/GEO/series/GSE12104.yaml +10 -0
  301. data/install_scripts/GEO/series/GSE12138.yaml +13 -0
  302. data/install_scripts/GEO/series/GSE12150.yaml +32 -0
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  305. data/install_scripts/GEO/series/GSE1365.yaml +14 -0
  306. data/install_scripts/GEO/series/GSE1404.yaml +596 -0
  307. data/install_scripts/GEO/series/GSE1492.yaml +15 -0
  308. data/install_scripts/GEO/series/GSE15222.yaml +731 -0
  309. data/install_scripts/GEO/series/GSE1553.yaml +23 -0
  310. data/install_scripts/GEO/series/GSE1617.yaml +39 -0
  311. data/install_scripts/GEO/series/GSE1688.yaml +36 -0
  312. data/install_scripts/GEO/series/GSE1693.yaml +60 -0
  313. data/install_scripts/GEO/series/GSE1752.yaml +32 -0
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  319. data/install_scripts/GEO/series/GSE1763.yaml +19 -0
  320. data/install_scripts/GEO/series/GSE1915.yaml +39 -0
  321. data/install_scripts/GEO/series/GSE1927.yaml +14 -0
  322. data/install_scripts/GEO/series/GSE1941.yaml +23 -0
  323. data/install_scripts/GEO/series/GSE1942.yaml +31 -0
  324. data/install_scripts/GEO/series/GSE1944.yaml +58 -0
  325. data/install_scripts/GEO/series/GSE1975.yaml +65 -0
  326. data/install_scripts/GEO/series/GSE20.yaml +24 -0
  327. data/install_scripts/GEO/series/GSE2107.yaml +14 -0
  328. data/install_scripts/GEO/series/GSE2159.yaml +31 -0
  329. data/install_scripts/GEO/series/GSE2246.yaml +157 -0
  330. data/install_scripts/GEO/series/GSE2263.yaml +57 -0
  331. data/install_scripts/GEO/series/GSE2267.yaml +155 -0
  332. data/install_scripts/GEO/series/GSE23.yaml +58 -0
  333. data/install_scripts/GEO/series/GSE2329.yaml +43 -0
  334. data/install_scripts/GEO/series/GSE2330.yaml +55 -0
  335. data/install_scripts/GEO/series/GSE2349.yaml +19 -0
  336. data/install_scripts/GEO/series/GSE2412.yaml +58 -0
  337. data/install_scripts/GEO/series/GSE2419.yaml +27 -0
  338. data/install_scripts/GEO/series/GSE2420.yaml +29 -0
  339. data/install_scripts/GEO/series/GSE2434.yaml +37 -0
  340. data/install_scripts/GEO/series/GSE2526.yaml +23 -0
  341. data/install_scripts/GEO/series/GSE2579.yaml +19 -0
  342. data/install_scripts/GEO/series/GSE2806.yaml +11 -0
  343. data/install_scripts/GEO/series/GSE2831.yaml +35 -0
  344. data/install_scripts/GEO/series/GSE2832.yaml +17 -0
  345. data/install_scripts/GEO/series/GSE29.yaml +16 -0
  346. data/install_scripts/GEO/series/GSE3006.yaml +35 -0
  347. data/install_scripts/GEO/series/GSE3043.yaml +18 -0
  348. data/install_scripts/GEO/series/GSE3122.yaml +12 -0
  349. data/install_scripts/GEO/series/GSE3130.yaml +12 -0
  350. data/install_scripts/GEO/series/GSE3151.yaml +118 -0
  351. data/install_scripts/GEO/series/GSE3160.yaml +31 -0
  352. data/install_scripts/GEO/series/GSE3190.yaml +14 -0
  353. data/install_scripts/GEO/series/GSE3205.yaml +36 -0
  354. data/install_scripts/GEO/series/GSE3206.yaml +23 -0
  355. data/install_scripts/GEO/series/GSE3315.yaml +13 -0
  356. data/install_scripts/GEO/series/GSE3335.yaml +15 -0
  357. data/install_scripts/GEO/series/GSE34.yaml +31 -0
  358. data/install_scripts/GEO/series/GSE3470.yaml +15 -0
  359. data/install_scripts/GEO/series/GSE35.yaml +80 -0
  360. data/install_scripts/GEO/series/GSE3503.yaml +19 -0
  361. data/install_scripts/GEO/series/GSE3683.yaml +83 -0
  362. data/install_scripts/GEO/series/GSE3684.yaml +19 -0
  363. data/install_scripts/GEO/series/GSE3685.yaml +31 -0
  364. data/install_scripts/GEO/series/GSE3686.yaml +63 -0
  365. data/install_scripts/GEO/series/GSE3687.yaml +83 -0
  366. data/install_scripts/GEO/series/GSE3802.yaml +19 -0
  367. data/install_scripts/GEO/series/GSE3803.yaml +19 -0
  368. data/install_scripts/GEO/series/GSE3804.yaml +19 -0
  369. data/install_scripts/GEO/series/GSE3805.yaml +19 -0
  370. data/install_scripts/GEO/series/GSE3813.yaml +9 -0
  371. data/install_scripts/GEO/series/GSE3814.yaml +71 -0
  372. data/install_scripts/GEO/series/GSE3815.yaml +75 -0
  373. data/install_scripts/GEO/series/GSE3817.yaml +13 -0
  374. data/install_scripts/GEO/series/GSE3818.yaml +15 -0
  375. data/install_scripts/GEO/series/GSE3819.yaml +13 -0
  376. data/install_scripts/GEO/series/GSE3820.yaml +61 -0
  377. data/install_scripts/GEO/series/GSE3821.yaml +55 -0
  378. data/install_scripts/GEO/series/GSE3844.yaml +11 -0
  379. data/install_scripts/GEO/series/GSE3853.yaml +31 -0
  380. data/install_scripts/GEO/series/GSE3935.yaml +12 -0
  381. data/install_scripts/GEO/series/GSE3969.yaml +14 -0
  382. data/install_scripts/GEO/series/GSE4049.yaml +80 -0
  383. data/install_scripts/GEO/series/GSE4144.yaml +9 -0
  384. data/install_scripts/GEO/series/GSE4261.yaml +59 -0
  385. data/install_scripts/GEO/series/GSE4295.yaml +63 -0
  386. data/install_scripts/GEO/series/GSE4398.yaml +50 -0
  387. data/install_scripts/GEO/series/GSE4719.yaml +76 -0
  388. data/install_scripts/GEO/series/GSE4720.yaml +78 -0
  389. data/install_scripts/GEO/series/GSE4721.yaml +14 -0
  390. data/install_scripts/GEO/series/GSE4807.yaml +67 -0
  391. data/install_scripts/GEO/series/GSE4826.yaml +39 -0
  392. data/install_scripts/GEO/series/GSE4934.yaml +23 -0
  393. data/install_scripts/GEO/series/GSE5027.yaml +31 -0
  394. data/install_scripts/GEO/series/GSE5070.yaml +25 -0
  395. data/install_scripts/GEO/series/GSE5238.yaml +31 -0
  396. data/install_scripts/GEO/series/GSE5267.yaml +55 -0
  397. data/install_scripts/GEO/series/GSE5281.yaml +492 -0
  398. data/install_scripts/GEO/series/GSE5290.yaml +24 -0
  399. data/install_scripts/GEO/series/GSE5376.yaml +107 -0
  400. data/install_scripts/GEO/series/GSE5575.yaml +13 -0
  401. data/install_scripts/GEO/series/GSE5835.yaml +25 -0
  402. data/install_scripts/GEO/series/GSE5836.yaml +37 -0
  403. data/install_scripts/GEO/series/GSE5837.yaml +37 -0
  404. data/install_scripts/GEO/series/GSE5938.yaml +187 -0
  405. data/install_scripts/GEO/series/GSE600.yaml +29 -0
  406. data/install_scripts/GEO/series/GSE6018.yaml +55 -0
  407. data/install_scripts/GEO/series/GSE6066.yaml +20 -0
  408. data/install_scripts/GEO/series/GSE6067.yaml +31 -0
  409. data/install_scripts/GEO/series/GSE6068.yaml +55 -0
  410. data/install_scripts/GEO/series/GSE6070.yaml +31 -0
  411. data/install_scripts/GEO/series/GSE6071.yaml +30 -0
  412. data/install_scripts/GEO/series/GSE6072.yaml +37 -0
  413. data/install_scripts/GEO/series/GSE6101.yaml +26 -0
  414. data/install_scripts/GEO/series/GSE6111.yaml +20 -0
  415. data/install_scripts/GEO/series/GSE6190.yaml +30 -0
  416. data/install_scripts/GEO/series/GSE6277.yaml +19 -0
  417. data/install_scripts/GEO/series/GSE6331.yaml +51 -0
  418. data/install_scripts/GEO/series/GSE6346.yaml +49 -0
  419. data/install_scripts/GEO/series/GSE6358.yaml +22 -0
  420. data/install_scripts/GEO/series/GSE6405.yaml +36 -0
  421. data/install_scripts/GEO/series/GSE6450.yaml +51 -0
  422. data/install_scripts/GEO/series/GSE6687.yaml +15 -0
  423. data/install_scripts/GEO/series/GSE6705.yaml +19 -0
  424. data/install_scripts/GEO/series/GSE6801.yaml +27 -0
  425. data/install_scripts/GEO/series/GSE6847.yaml +18 -0
  426. data/install_scripts/GEO/series/GSE6870.yaml +23 -0
  427. data/install_scripts/GEO/series/GSE7103.yaml +28 -0
  428. data/install_scripts/GEO/series/GSE7140.yaml +19 -0
  429. data/install_scripts/GEO/series/GSE7188.yaml +23 -0
  430. data/install_scripts/GEO/series/GSE7261.yaml +16 -0
  431. data/install_scripts/GEO/series/GSE7337.yaml +19 -0
  432. data/install_scripts/GEO/series/GSE7338.yaml +19 -0
  433. data/install_scripts/GEO/series/GSE7362.yaml +123 -0
  434. data/install_scripts/GEO/series/GSE7369.yaml +15 -0
  435. data/install_scripts/GEO/series/GSE7525.yaml +33 -0
  436. data/install_scripts/GEO/series/GSE7537.yaml +27 -0
  437. data/install_scripts/GEO/series/GSE7645.yaml +152 -0
  438. data/install_scripts/GEO/series/GSE7660.yaml +41 -0
  439. data/install_scripts/GEO/series/GSE7820.yaml +30 -0
  440. data/install_scripts/GEO/series/GSE79.yaml +32 -0
  441. data/install_scripts/GEO/series/GSE8035.yaml +19 -0
  442. data/install_scripts/GEO/series/GSE8088.yaml +13 -0
  443. data/install_scripts/GEO/series/GSE8089.yaml +19 -0
  444. data/install_scripts/GEO/series/GSE8111.yaml +15 -0
  445. data/install_scripts/GEO/series/GSE8237.yaml +35 -0
  446. data/install_scripts/GEO/series/GSE8326.yaml +37 -0
  447. data/install_scripts/GEO/series/GSE8399.yaml +13 -0
  448. data/install_scripts/GEO/series/GSE850.yaml +15 -0
  449. data/install_scripts/GEO/series/GSE8506.yaml +32 -0
  450. data/install_scripts/GEO/series/GSE8542.yaml +47 -0
  451. data/install_scripts/GEO/series/GSE8558.yaml +19 -0
  452. data/install_scripts/GEO/series/GSE8559.yaml +47 -0
  453. data/install_scripts/GEO/series/GSE8613.yaml +19 -0
  454. data/install_scripts/GEO/series/GSE8629.yaml +18 -0
  455. data/install_scripts/GEO/series/GSE8729.yaml +19 -0
  456. data/install_scripts/GEO/series/GSE8761.yaml +55 -0
  457. data/install_scripts/GEO/series/GSE8765.yaml +15 -0
  458. data/install_scripts/GEO/series/GSE8805.yaml +64 -0
  459. data/install_scripts/GEO/series/GSE8825.yaml +79 -0
  460. data/install_scripts/GEO/series/GSE8895.yaml +31 -0
  461. data/install_scripts/GEO/series/GSE8897.yaml +17 -0
  462. data/install_scripts/GEO/series/GSE8898.yaml +18 -0
  463. data/install_scripts/GEO/series/GSE8900.yaml +43 -0
  464. data/install_scripts/GEO/series/GSE8982.yaml +106 -0
  465. data/install_scripts/GEO/series/GSE920.yaml +20 -0
  466. data/install_scripts/GEO/series/GSE960.yaml +10 -0
  467. data/install_scripts/GEO/series/GSE961.yaml +14 -0
  468. data/install_scripts/GEO/series/GSE962.yaml +20 -0
  469. data/install_scripts/GEO/series/GSE963.yaml +14 -0
  470. data/install_scripts/GEO/series/GSE964.yaml +14 -0
  471. data/install_scripts/GEO/series/GSE965.yaml +14 -0
  472. data/install_scripts/GEO/series/GSE966.yaml +14 -0
  473. data/install_scripts/GEO/series/GSE993.yaml +9 -0
  474. data/lib/MARQ.rb +79 -0
  475. data/lib/MARQ/CustomDS.rb +99 -0
  476. data/lib/MARQ/GEO.rb +588 -0
  477. data/lib/MARQ/ID.rb +144 -0
  478. data/lib/MARQ/MADB.rb +238 -0
  479. data/lib/MARQ/annotations.rb +740 -0
  480. data/lib/MARQ/fdr.rb +177 -0
  481. data/lib/MARQ/main.rb +227 -0
  482. data/lib/MARQ/rankproduct.rb +146 -0
  483. data/lib/MARQ/score.rb +395 -0
  484. data/tasks/install.rake +21 -0
  485. metadata +588 -0
data/install_scripts/GEO/platforms/GPL543.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 1 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL544.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 2 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL545.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 3 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 4
6
+ - EXON1
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL546.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 4 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL547.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Splicing Experiment, Chip 5 of 5
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - GENE_SYMBOL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL549.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: "Atlas Human Cardiovascular Array (Cat. #7734-1)\r"
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 4
6
+ - GENE
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL550.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: UNC compugen oligo array for toxgenomics study
3
+ :BioMart_ID:
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL56.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y16
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL560.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Developmental Toxicity of the Mouse Embryo (DTME)
3
+ :BioMart_ID:
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL564.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Rosetta (Merck) Blood donor experiment
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 5
6
+ - SPOT_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL57.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y6k_6400
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL570.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Genome U133 Plus 2.0 Array
3
+ :BioMart_ID: AFFY HG U133-PLUS-2
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL571.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Genome U133A 2.0 Array
3
+ :BioMart_ID: AFFY HG U133A
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL576.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: UCSF elegans2b 20K array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 4
6
+ - SPOT_ID
7
+ :organism: worm
data/install_scripts/GEO/platforms/GPL58.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 2
4
+ - ORF
5
+ :title: y74
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL5823.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: UHN_yeast_6.4kv4
3
+ :organism: sgd
4
+ :BioMart_ID: Ensembl Gene ID
data/install_scripts/GEO/platforms/GPL59.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y744
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL5915.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: UWAPG Yeast 6K v1.0
3
+ :organism: sgd
4
+ :BioMart_ID: Ensembl Gene ID
data/install_scripts/GEO/platforms/GPL5947.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 2
4
+ - ORF
5
+ :title: WashU Operon Array-Ready Yeast Oligo set (Yeast_V1.1.2)
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL61.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y80-Paul
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL64.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: y9
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL6419.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 8
4
+ - SEQUENCE DESCRIPTION
5
+ :title: Print_835
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL6424.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 3
4
+ - ORF
5
+ :title: UCSF_SC_ORF_Uberp10
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL65.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: yeast_384_F_v1.0
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL6574.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Histone TAG Array 06A
3
+ :organism: sgd
4
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL6649.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: CEA Saccharomyces cerevisiae 6k Whole Genome Microarray
3
+ :organism: sgd
4
+ :BioMart_ID: Ensembl Gene ID
data/install_scripts/GEO/platforms/GPL67.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: yeast_v1_2.2
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL6720.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 7
4
+ - Description
5
+ :title: Agilent Saccharomyces cerevisiae array
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL7054.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: yeast48canada (condensed version)
3
+ :BioMart_ID: Ensembl Protein ID
4
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL737.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Agilent Human 1A Oligo UNC_custom array
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - AGI_PROBE_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL738.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: NIA Mouse 17K_A
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 6
6
+ - ENTREZ_GENE
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL74.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Cancer Array HC-G110
3
+ :BioMart_ID: AFFY HG U95A
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL75.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine 11K SubA Array Mu11K-A
3
+ :BioMart_ID: Affy mu11ksuba
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL76.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine 11K SubB Array Mu11K-B
3
+ :BioMart_ID: Affy mu11ksubb
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL764.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 2
4
+ - GENE_LIST
5
+ :title: yeast48canada
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL772.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Valencia yeast v2
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL782.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: NIA Mouse 17K_B
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 6
6
+ - ENTREZ_GENE
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL783.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Human oligo array part I LGTC
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - SPOT_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL784.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Human oligo array part II LGTC
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - SPOT_ID
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL80.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Full Length Array HuGeneFL (Hu6800)
3
+ :BioMart_ID: AFFY HUGENEFL
4
+ :organism: human
data/install_scripts/GEO/platforms/GPL81.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine Genome U74 Version 2 Set MG-U74A
3
+ :BioMart_ID: Affy mg u74a
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL82.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine Genome U74 Version 2 Set MG-U74B
3
+ :BioMart_ID: Affy mg u74b
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL83.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Murine Genome U74 Version 2 Set MG-U74C
3
+ :BioMart_ID: Affy mg u74cv2
4
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL85.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Rat Genome U34 Array Set RG-U34A
3
+ :BioMart_ID: Affy rg u34a
4
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL86.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Rat Genome U34 Array Set RG-U34B
3
+ :BioMart_ID: Affy rg u34b
4
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL87.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Rat Genome U34 Array Set RG-U34C
3
+ :BioMart_ID: Affy rg u34c
4
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL870.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: NIA Mouse 22K Microarray v1.0 (Development 60-mer Oligo)
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 13
6
+ - SP LIST
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL875.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Agilent Human 1 cDNA Microarray (G4100A) [layout A]
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 3
6
+ - COL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL884.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :other_ID_field:
3
+ - 4
4
+ - NAME
5
+ :title: Agilent-011447 Yeast Oligo Microarray G4140A (Feature Number version)
6
+ :organism: sgd
7
+ :BioMart_ID:
data/install_scripts/GEO/platforms/GPL887.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Agilent-012097 Human 1A Microarray (V2) G4110B (Feature Number version)
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - COL
7
+ :organism: human
data/install_scripts/GEO/platforms/GPL89.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Rat Toxicology U34 Array RT-U34
3
+ :BioMart_ID: Affy rg u34a
4
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL890.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Agilent-011868 Rat Oligo Microarray G4130A (Feature Number version)
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 5
6
+ - SPOT_ID
7
+ :organism: rgd
data/install_scripts/GEO/platforms/GPL891.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Agilent-011978 Mouse Microarray G4121A (Feature Number version)
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 5
6
+ - SPOT_ID
7
+ :organism: mgi
data/install_scripts/GEO/platforms/GPL90.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Yeast Genome S98 Array YG-S98
3
+ :BioMart_ID:
4
+ :other_ID_field:
5
+ - 2
6
+ - ORF
7
+ :organism: sgd
data/install_scripts/GEO/platforms/GPL91.yaml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :title: Affymetrix GeneChip Human Genome U95 Version [1 or 2] Set HG-U95A
3
+ :BioMart_ID: AFFY HG U95AV2
4
+ :organism: human