rbbt-marq 1.0.0

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  1. data/LICENSE +20 -0
  2. data/R/CustomDS.R +80 -0
  3. data/R/GEO.R +249 -0
  4. data/R/MA.R +359 -0
  5. data/README.rdoc +58 -0
  6. data/bin/marq_config +209 -0
  7. data/install_scripts/CustomDS/Rakefile +223 -0
  8. data/install_scripts/GEO/Rakefile +272 -0
  9. data/install_scripts/GEO/platforms/GPL100.yaml +7 -0
  10. data/install_scripts/GEO/platforms/GPL1002.yaml +7 -0
  11. data/install_scripts/GEO/platforms/GPL1007.yaml +7 -0
  12. data/install_scripts/GEO/platforms/GPL101.yaml +7 -0
  13. data/install_scripts/GEO/platforms/GPL1010.yaml +7 -0
  14. data/install_scripts/GEO/platforms/GPL1073.yaml +7 -0
  15. data/install_scripts/GEO/platforms/GPL1074.yaml +4 -0
  16. data/install_scripts/GEO/platforms/GPL1090.yaml +7 -0
  17. data/install_scripts/GEO/platforms/GPL1104.yaml +7 -0
  18. data/install_scripts/GEO/platforms/GPL118.yaml +7 -0
  19. data/install_scripts/GEO/platforms/GPL1205.yaml +4 -0
  20. data/install_scripts/GEO/platforms/GPL1211.yaml +7 -0
  21. data/install_scripts/GEO/platforms/GPL1213.yaml +7 -0
  22. data/install_scripts/GEO/platforms/GPL1219.yaml +4 -0
  23. data/install_scripts/GEO/platforms/GPL1223.yaml +7 -0
  24. data/install_scripts/GEO/platforms/GPL1226.yaml +7 -0
  25. data/install_scripts/GEO/platforms/GPL1229.yaml +7 -0
  26. data/install_scripts/GEO/platforms/GPL1230.yaml +7 -0
  27. data/install_scripts/GEO/platforms/GPL1231.yaml +7 -0
  28. data/install_scripts/GEO/platforms/GPL1232.yaml +7 -0
  29. data/install_scripts/GEO/platforms/GPL1260.yaml +4 -0
  30. data/install_scripts/GEO/platforms/GPL1261.yaml +4 -0
  31. data/install_scripts/GEO/platforms/GPL127.yaml +4 -0
  32. data/install_scripts/GEO/platforms/GPL128.yaml +7 -0
  33. data/install_scripts/GEO/platforms/GPL1290.yaml +7 -0
  34. data/install_scripts/GEO/platforms/GPL1292.yaml +7 -0
  35. data/install_scripts/GEO/platforms/GPL1293.yaml +7 -0
  36. data/install_scripts/GEO/platforms/GPL1294.yaml +7 -0
  37. data/install_scripts/GEO/platforms/GPL1295.yaml +7 -0
  38. data/install_scripts/GEO/platforms/GPL13.yaml +4 -0
  39. data/install_scripts/GEO/platforms/GPL1310.yaml +7 -0
  40. data/install_scripts/GEO/platforms/GPL1313.yaml +7 -0
  41. data/install_scripts/GEO/platforms/GPL1323.yaml +7 -0
  42. data/install_scripts/GEO/platforms/GPL1331.yaml +7 -0
  43. data/install_scripts/GEO/platforms/GPL1352.yaml +4 -0
  44. data/install_scripts/GEO/platforms/GPL1355.yaml +4 -0
  45. data/install_scripts/GEO/platforms/GPL1382.yaml +7 -0
  46. data/install_scripts/GEO/platforms/GPL1387.yaml +7 -0
  47. data/install_scripts/GEO/platforms/GPL1397.yaml +4 -0
  48. data/install_scripts/GEO/platforms/GPL14.yaml +7 -0
  49. data/install_scripts/GEO/platforms/GPL1412.yaml +7 -0
  50. data/install_scripts/GEO/platforms/GPL1415.yaml +7 -0
  51. data/install_scripts/GEO/platforms/GPL1420.yaml +7 -0
  52. data/install_scripts/GEO/platforms/GPL144.yaml +7 -0
  53. data/install_scripts/GEO/platforms/GPL1449.yaml +7 -0
  54. data/install_scripts/GEO/platforms/GPL1458.yaml +7 -0
  55. data/install_scripts/GEO/platforms/GPL1523.yaml +7 -0
  56. data/install_scripts/GEO/platforms/GPL1524.yaml +7 -0
  57. data/install_scripts/GEO/platforms/GPL1528.yaml +7 -0
  58. data/install_scripts/GEO/platforms/GPL153.yaml +7 -0
  59. data/install_scripts/GEO/platforms/GPL1530.yaml +7 -0
  60. data/install_scripts/GEO/platforms/GPL1535.yaml +4 -0
  61. data/install_scripts/GEO/platforms/GPL155.yaml +7 -0
  62. data/install_scripts/GEO/platforms/GPL163.yaml +7 -0
  63. data/install_scripts/GEO/platforms/GPL168.yaml +7 -0
  64. data/install_scripts/GEO/platforms/GPL169.yaml +7 -0
  65. data/install_scripts/GEO/platforms/GPL1704.yaml +4 -0
  66. data/install_scripts/GEO/platforms/GPL1708.yaml +7 -0
  67. data/install_scripts/GEO/platforms/GPL1739.yaml +7 -0
  68. data/install_scripts/GEO/platforms/GPL1740.yaml +4 -0
  69. data/install_scripts/GEO/platforms/GPL1749.yaml +7 -0
  70. data/install_scripts/GEO/platforms/GPL177.yaml +7 -0
  71. data/install_scripts/GEO/platforms/GPL1790.yaml +7 -0
  72. data/install_scripts/GEO/platforms/GPL1792.yaml +7 -0
  73. data/install_scripts/GEO/platforms/GPL181.yaml +7 -0
  74. data/install_scripts/GEO/platforms/GPL1818.yaml +7 -0
  75. data/install_scripts/GEO/platforms/GPL1820.yaml +4 -0
  76. data/install_scripts/GEO/platforms/GPL1823.yaml +7 -0
  77. data/install_scripts/GEO/platforms/GPL1826.yaml +7 -0
  78. data/install_scripts/GEO/platforms/GPL183.yaml +7 -0
  79. data/install_scripts/GEO/platforms/GPL1831.yaml +7 -0
  80. data/install_scripts/GEO/platforms/GPL1833.yaml +7 -0
  81. data/install_scripts/GEO/platforms/GPL1872.yaml +4 -0
  82. data/install_scripts/GEO/platforms/GPL1911.yaml +7 -0
  83. data/install_scripts/GEO/platforms/GPL1914.yaml +4 -0
  84. data/install_scripts/GEO/platforms/GPL1928.yaml +7 -0
  85. data/install_scripts/GEO/platforms/GPL1942.yaml +7 -0
  86. data/install_scripts/GEO/platforms/GPL1945.yaml +7 -0
  87. data/install_scripts/GEO/platforms/GPL1964.yaml +7 -0
  88. data/install_scripts/GEO/platforms/GPL198.yaml +4 -0
  89. data/install_scripts/GEO/platforms/GPL1981.yaml +4 -0
  90. data/install_scripts/GEO/platforms/GPL200.yaml +7 -0
  91. data/install_scripts/GEO/platforms/GPL2006.yaml +7 -0
  92. data/install_scripts/GEO/platforms/GPL201.yaml +4 -0
  93. data/install_scripts/GEO/platforms/GPL2011.yaml +7 -0
  94. data/install_scripts/GEO/platforms/GPL2026.yaml +7 -0
  95. data/install_scripts/GEO/platforms/GPL205.yaml +7 -0
  96. data/install_scripts/GEO/platforms/GPL207.yaml +7 -0
  97. data/install_scripts/GEO/platforms/GPL2136.yaml +7 -0
  98. data/install_scripts/GEO/platforms/GPL220.yaml +7 -0
  99. data/install_scripts/GEO/platforms/GPL226.yaml +7 -0
  100. data/install_scripts/GEO/platforms/GPL24.yaml +4 -0
  101. data/install_scripts/GEO/platforms/GPL246.yaml +4 -0
  102. data/install_scripts/GEO/platforms/GPL247.yaml +7 -0
  103. data/install_scripts/GEO/platforms/GPL2507.yaml +4 -0
  104. data/install_scripts/GEO/platforms/GPL2529.yaml +4 -0
  105. data/install_scripts/GEO/platforms/GPL2531.yaml +7 -0
  106. data/install_scripts/GEO/platforms/GPL254.yaml +7 -0
  107. data/install_scripts/GEO/platforms/GPL2569.yaml +7 -0
  108. data/install_scripts/GEO/platforms/GPL257.yaml +7 -0
  109. data/install_scripts/GEO/platforms/GPL2598.yaml +7 -0
  110. data/install_scripts/GEO/platforms/GPL260.yaml +7 -0
  111. data/install_scripts/GEO/platforms/GPL2614.yaml +4 -0
  112. data/install_scripts/GEO/platforms/GPL2622.yaml +7 -0
  113. data/install_scripts/GEO/platforms/GPL2623.yaml +7 -0
  114. data/install_scripts/GEO/platforms/GPL2660.yaml +7 -0
  115. data/install_scripts/GEO/platforms/GPL2670.yaml +7 -0
  116. data/install_scripts/GEO/platforms/GPL2677.yaml +7 -0
  117. data/install_scripts/GEO/platforms/GPL2700.yaml +4 -0
  118. data/install_scripts/GEO/platforms/GPL2721.yaml +7 -0
  119. data/install_scripts/GEO/platforms/GPL2727.yaml +7 -0
  120. data/install_scripts/GEO/platforms/GPL273.yaml +7 -0
  121. data/install_scripts/GEO/platforms/GPL2763.yaml +7 -0
  122. data/install_scripts/GEO/platforms/GPL2824.yaml +7 -0
  123. data/install_scripts/GEO/platforms/GPL284.yaml +7 -0
  124. data/install_scripts/GEO/platforms/GPL287.yaml +4 -0
  125. data/install_scripts/GEO/platforms/GPL2872.yaml +7 -0
  126. data/install_scripts/GEO/platforms/GPL288.yaml +4 -0
  127. data/install_scripts/GEO/platforms/GPL2883.yaml +7 -0
  128. data/install_scripts/GEO/platforms/GPL289.yaml +4 -0
  129. data/install_scripts/GEO/platforms/GPL2895.yaml +4 -0
  130. data/install_scripts/GEO/platforms/GPL2897.yaml +7 -0
  131. data/install_scripts/GEO/platforms/GPL2902.yaml +7 -0
  132. data/install_scripts/GEO/platforms/GPL2987.yaml +4 -0
  133. data/install_scripts/GEO/platforms/GPL2995.yaml +7 -0
  134. data/install_scripts/GEO/platforms/GPL3039.yaml +4 -0
  135. data/install_scripts/GEO/platforms/GPL3050.yaml +7 -0
  136. data/install_scripts/GEO/platforms/GPL3084.yaml +7 -0
  137. data/install_scripts/GEO/platforms/GPL3113.yaml +7 -0
  138. data/install_scripts/GEO/platforms/GPL317.yaml +7 -0
  139. data/install_scripts/GEO/platforms/GPL319.yaml +7 -0
  140. data/install_scripts/GEO/platforms/GPL32.yaml +4 -0
  141. data/install_scripts/GEO/platforms/GPL3222.yaml +7 -0
  142. data/install_scripts/GEO/platforms/GPL3295.yaml +7 -0
  143. data/install_scripts/GEO/platforms/GPL3305.yaml +4 -0
  144. data/install_scripts/GEO/platforms/GPL3306.yaml +7 -0
  145. data/install_scripts/GEO/platforms/GPL3307.yaml +7 -0
  146. data/install_scripts/GEO/platforms/GPL333.yaml +4 -0
  147. data/install_scripts/GEO/platforms/GPL3341.yaml +7 -0
  148. data/install_scripts/GEO/platforms/GPL3349.yaml +7 -0
  149. data/install_scripts/GEO/platforms/GPL339.yaml +4 -0
  150. data/install_scripts/GEO/platforms/GPL340.yaml +4 -0
  151. data/install_scripts/GEO/platforms/GPL3408.yaml +7 -0
  152. data/install_scripts/GEO/platforms/GPL341.yaml +4 -0
  153. data/install_scripts/GEO/platforms/GPL3415.yaml +4 -0
  154. data/install_scripts/GEO/platforms/GPL3423.yaml +7 -0
  155. data/install_scripts/GEO/platforms/GPL3440.yaml +7 -0
  156. data/install_scripts/GEO/platforms/GPL3457.yaml +4 -0
  157. data/install_scripts/GEO/platforms/GPL3504.yaml +4 -0
  158. data/install_scripts/GEO/platforms/GPL3506.yaml +4 -0
  159. data/install_scripts/GEO/platforms/GPL355.yaml +7 -0
  160. data/install_scripts/GEO/platforms/GPL3558.yaml +7 -0
  161. data/install_scripts/GEO/platforms/GPL3607.yaml +7 -0
  162. data/install_scripts/GEO/platforms/GPL368.yaml +4 -0
  163. data/install_scripts/GEO/platforms/GPL3695.yaml +7 -0
  164. data/install_scripts/GEO/platforms/GPL371.yaml +7 -0
  165. data/install_scripts/GEO/platforms/GPL3834.yaml +4 -0
  166. data/install_scripts/GEO/platforms/GPL4006.yaml +7 -0
  167. data/install_scripts/GEO/platforms/GPL4055.yaml +7 -0
  168. data/install_scripts/GEO/platforms/GPL409.yaml +7 -0
  169. data/install_scripts/GEO/platforms/GPL4191.yaml +7 -0
  170. data/install_scripts/GEO/platforms/GPL4226.yaml +7 -0
  171. data/install_scripts/GEO/platforms/GPL4371.yaml +7 -0
  172. data/install_scripts/GEO/platforms/GPL4567.yaml +4 -0
  173. data/install_scripts/GEO/platforms/GPL4685.yaml +4 -0
  174. data/install_scripts/GEO/platforms/GPL483.yaml +7 -0
  175. data/install_scripts/GEO/platforms/GPL49.yaml +7 -0
  176. data/install_scripts/GEO/platforms/GPL50.yaml +7 -0
  177. data/install_scripts/GEO/platforms/GPL500.yaml +7 -0
  178. data/install_scripts/GEO/platforms/GPL507.yaml +4 -0
  179. data/install_scripts/GEO/platforms/GPL51.yaml +7 -0
  180. data/install_scripts/GEO/platforms/GPL513.yaml +7 -0
  181. data/install_scripts/GEO/platforms/GPL519.yaml +7 -0
  182. data/install_scripts/GEO/platforms/GPL52.yaml +7 -0
  183. data/install_scripts/GEO/platforms/GPL529.yaml +7 -0
  184. data/install_scripts/GEO/platforms/GPL53.yaml +7 -0
  185. data/install_scripts/GEO/platforms/GPL5356.yaml +7 -0
  186. data/install_scripts/GEO/platforms/GPL538.yaml +7 -0
  187. data/install_scripts/GEO/platforms/GPL54.yaml +7 -0
  188. data/install_scripts/GEO/platforms/GPL543.yaml +7 -0
  189. data/install_scripts/GEO/platforms/GPL544.yaml +7 -0
  190. data/install_scripts/GEO/platforms/GPL545.yaml +7 -0
  191. data/install_scripts/GEO/platforms/GPL546.yaml +7 -0
  192. data/install_scripts/GEO/platforms/GPL547.yaml +7 -0
  193. data/install_scripts/GEO/platforms/GPL549.yaml +7 -0
  194. data/install_scripts/GEO/platforms/GPL550.yaml +4 -0
  195. data/install_scripts/GEO/platforms/GPL56.yaml +7 -0
  196. data/install_scripts/GEO/platforms/GPL560.yaml +4 -0
  197. data/install_scripts/GEO/platforms/GPL564.yaml +7 -0
  198. data/install_scripts/GEO/platforms/GPL57.yaml +7 -0
  199. data/install_scripts/GEO/platforms/GPL570.yaml +4 -0
  200. data/install_scripts/GEO/platforms/GPL571.yaml +4 -0
  201. data/install_scripts/GEO/platforms/GPL576.yaml +7 -0
  202. data/install_scripts/GEO/platforms/GPL58.yaml +7 -0
  203. data/install_scripts/GEO/platforms/GPL5823.yaml +4 -0
  204. data/install_scripts/GEO/platforms/GPL59.yaml +7 -0
  205. data/install_scripts/GEO/platforms/GPL5915.yaml +4 -0
  206. data/install_scripts/GEO/platforms/GPL5947.yaml +7 -0
  207. data/install_scripts/GEO/platforms/GPL61.yaml +7 -0
  208. data/install_scripts/GEO/platforms/GPL64.yaml +7 -0
  209. data/install_scripts/GEO/platforms/GPL6419.yaml +7 -0
  210. data/install_scripts/GEO/platforms/GPL6424.yaml +7 -0
  211. data/install_scripts/GEO/platforms/GPL65.yaml +7 -0
  212. data/install_scripts/GEO/platforms/GPL6574.yaml +4 -0
  213. data/install_scripts/GEO/platforms/GPL6649.yaml +4 -0
  214. data/install_scripts/GEO/platforms/GPL67.yaml +7 -0
  215. data/install_scripts/GEO/platforms/GPL6720.yaml +7 -0
  216. data/install_scripts/GEO/platforms/GPL7054.yaml +4 -0
  217. data/install_scripts/GEO/platforms/GPL737.yaml +7 -0
  218. data/install_scripts/GEO/platforms/GPL738.yaml +7 -0
  219. data/install_scripts/GEO/platforms/GPL74.yaml +4 -0
  220. data/install_scripts/GEO/platforms/GPL75.yaml +4 -0
  221. data/install_scripts/GEO/platforms/GPL76.yaml +4 -0
  222. data/install_scripts/GEO/platforms/GPL764.yaml +7 -0
  223. data/install_scripts/GEO/platforms/GPL772.yaml +7 -0
  224. data/install_scripts/GEO/platforms/GPL782.yaml +7 -0
  225. data/install_scripts/GEO/platforms/GPL783.yaml +7 -0
  226. data/install_scripts/GEO/platforms/GPL784.yaml +7 -0
  227. data/install_scripts/GEO/platforms/GPL80.yaml +4 -0
  228. data/install_scripts/GEO/platforms/GPL81.yaml +4 -0
  229. data/install_scripts/GEO/platforms/GPL82.yaml +4 -0
  230. data/install_scripts/GEO/platforms/GPL83.yaml +4 -0
  231. data/install_scripts/GEO/platforms/GPL85.yaml +4 -0
  232. data/install_scripts/GEO/platforms/GPL86.yaml +4 -0
  233. data/install_scripts/GEO/platforms/GPL87.yaml +4 -0
  234. data/install_scripts/GEO/platforms/GPL870.yaml +7 -0
  235. data/install_scripts/GEO/platforms/GPL875.yaml +7 -0
  236. data/install_scripts/GEO/platforms/GPL884.yaml +7 -0
  237. data/install_scripts/GEO/platforms/GPL887.yaml +7 -0
  238. data/install_scripts/GEO/platforms/GPL89.yaml +4 -0
  239. data/install_scripts/GEO/platforms/GPL890.yaml +7 -0
  240. data/install_scripts/GEO/platforms/GPL891.yaml +7 -0
  241. data/install_scripts/GEO/platforms/GPL90.yaml +7 -0
  242. data/install_scripts/GEO/platforms/GPL91.yaml +4 -0
  243. data/install_scripts/GEO/platforms/GPL92.yaml +4 -0
  244. data/install_scripts/GEO/platforms/GPL920.yaml +7 -0
  245. data/install_scripts/GEO/platforms/GPL922.yaml +7 -0
  246. data/install_scripts/GEO/platforms/GPL924.yaml +7 -0
  247. data/install_scripts/GEO/platforms/GPL93.yaml +4 -0
  248. data/install_scripts/GEO/platforms/GPL96.yaml +4 -0
  249. data/install_scripts/GEO/platforms/GPL968.yaml +4 -0
  250. data/install_scripts/GEO/platforms/GPL97.yaml +4 -0
  251. data/install_scripts/GEO/platforms/GPL98.yaml +7 -0
  252. data/install_scripts/GEO/platforms/GPL981.yaml +7 -0
  253. data/install_scripts/GEO/platforms/GPL99.yaml +7 -0
  254. data/install_scripts/GEO/platforms/GPL999.yaml +7 -0
  255. data/install_scripts/GEO/series/GSE10018.yaml +61 -0
  256. data/install_scripts/GEO/series/GSE1002.yaml +135 -0
  257. data/install_scripts/GEO/series/GSE10066.yaml +31 -0
  258. data/install_scripts/GEO/series/GSE10073.yaml +19 -0
  259. data/install_scripts/GEO/series/GSE10091.yaml +15 -0
  260. data/install_scripts/GEO/series/GSE101.yaml +17 -0
  261. data/install_scripts/GEO/series/GSE10100.yaml +15 -0
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  267. data/install_scripts/GEO/series/GSE103.yaml +19 -0
  268. data/install_scripts/GEO/series/GSE104.yaml +19 -0
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  270. data/install_scripts/GEO/series/GSE10521.yaml +56 -0
  271. data/install_scripts/GEO/series/GSE10554.yaml +19 -0
  272. data/install_scripts/GEO/series/GSE1073.yaml +127 -0
  273. data/install_scripts/GEO/series/GSE10860.yaml +25 -0
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  296. data/install_scripts/GEO/series/GSE11983.yaml +15 -0
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  298. data/install_scripts/GEO/series/GSE12055.yaml +109 -0
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  300. data/install_scripts/GEO/series/GSE12104.yaml +10 -0
  301. data/install_scripts/GEO/series/GSE12138.yaml +13 -0
  302. data/install_scripts/GEO/series/GSE12150.yaml +32 -0
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  305. data/install_scripts/GEO/series/GSE1365.yaml +14 -0
  306. data/install_scripts/GEO/series/GSE1404.yaml +596 -0
  307. data/install_scripts/GEO/series/GSE1492.yaml +15 -0
  308. data/install_scripts/GEO/series/GSE15222.yaml +731 -0
  309. data/install_scripts/GEO/series/GSE1553.yaml +23 -0
  310. data/install_scripts/GEO/series/GSE1617.yaml +39 -0
  311. data/install_scripts/GEO/series/GSE1688.yaml +36 -0
  312. data/install_scripts/GEO/series/GSE1693.yaml +60 -0
  313. data/install_scripts/GEO/series/GSE1752.yaml +32 -0
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  319. data/install_scripts/GEO/series/GSE1763.yaml +19 -0
  320. data/install_scripts/GEO/series/GSE1915.yaml +39 -0
  321. data/install_scripts/GEO/series/GSE1927.yaml +14 -0
  322. data/install_scripts/GEO/series/GSE1941.yaml +23 -0
  323. data/install_scripts/GEO/series/GSE1942.yaml +31 -0
  324. data/install_scripts/GEO/series/GSE1944.yaml +58 -0
  325. data/install_scripts/GEO/series/GSE1975.yaml +65 -0
  326. data/install_scripts/GEO/series/GSE20.yaml +24 -0
  327. data/install_scripts/GEO/series/GSE2107.yaml +14 -0
  328. data/install_scripts/GEO/series/GSE2159.yaml +31 -0
  329. data/install_scripts/GEO/series/GSE2246.yaml +157 -0
  330. data/install_scripts/GEO/series/GSE2263.yaml +57 -0
  331. data/install_scripts/GEO/series/GSE2267.yaml +155 -0
  332. data/install_scripts/GEO/series/GSE23.yaml +58 -0
  333. data/install_scripts/GEO/series/GSE2329.yaml +43 -0
  334. data/install_scripts/GEO/series/GSE2330.yaml +55 -0
  335. data/install_scripts/GEO/series/GSE2349.yaml +19 -0
  336. data/install_scripts/GEO/series/GSE2412.yaml +58 -0
  337. data/install_scripts/GEO/series/GSE2419.yaml +27 -0
  338. data/install_scripts/GEO/series/GSE2420.yaml +29 -0
  339. data/install_scripts/GEO/series/GSE2434.yaml +37 -0
  340. data/install_scripts/GEO/series/GSE2526.yaml +23 -0
  341. data/install_scripts/GEO/series/GSE2579.yaml +19 -0
  342. data/install_scripts/GEO/series/GSE2806.yaml +11 -0
  343. data/install_scripts/GEO/series/GSE2831.yaml +35 -0
  344. data/install_scripts/GEO/series/GSE2832.yaml +17 -0
  345. data/install_scripts/GEO/series/GSE29.yaml +16 -0
  346. data/install_scripts/GEO/series/GSE3006.yaml +35 -0
  347. data/install_scripts/GEO/series/GSE3043.yaml +18 -0
  348. data/install_scripts/GEO/series/GSE3122.yaml +12 -0
  349. data/install_scripts/GEO/series/GSE3130.yaml +12 -0
  350. data/install_scripts/GEO/series/GSE3151.yaml +118 -0
  351. data/install_scripts/GEO/series/GSE3160.yaml +31 -0
  352. data/install_scripts/GEO/series/GSE3190.yaml +14 -0
  353. data/install_scripts/GEO/series/GSE3205.yaml +36 -0
  354. data/install_scripts/GEO/series/GSE3206.yaml +23 -0
  355. data/install_scripts/GEO/series/GSE3315.yaml +13 -0
  356. data/install_scripts/GEO/series/GSE3335.yaml +15 -0
  357. data/install_scripts/GEO/series/GSE34.yaml +31 -0
  358. data/install_scripts/GEO/series/GSE3470.yaml +15 -0
  359. data/install_scripts/GEO/series/GSE35.yaml +80 -0
  360. data/install_scripts/GEO/series/GSE3503.yaml +19 -0
  361. data/install_scripts/GEO/series/GSE3683.yaml +83 -0
  362. data/install_scripts/GEO/series/GSE3684.yaml +19 -0
  363. data/install_scripts/GEO/series/GSE3685.yaml +31 -0
  364. data/install_scripts/GEO/series/GSE3686.yaml +63 -0
  365. data/install_scripts/GEO/series/GSE3687.yaml +83 -0
  366. data/install_scripts/GEO/series/GSE3802.yaml +19 -0
  367. data/install_scripts/GEO/series/GSE3803.yaml +19 -0
  368. data/install_scripts/GEO/series/GSE3804.yaml +19 -0
  369. data/install_scripts/GEO/series/GSE3805.yaml +19 -0
  370. data/install_scripts/GEO/series/GSE3813.yaml +9 -0
  371. data/install_scripts/GEO/series/GSE3814.yaml +71 -0
  372. data/install_scripts/GEO/series/GSE3815.yaml +75 -0
  373. data/install_scripts/GEO/series/GSE3817.yaml +13 -0
  374. data/install_scripts/GEO/series/GSE3818.yaml +15 -0
  375. data/install_scripts/GEO/series/GSE3819.yaml +13 -0
  376. data/install_scripts/GEO/series/GSE3820.yaml +61 -0
  377. data/install_scripts/GEO/series/GSE3821.yaml +55 -0
  378. data/install_scripts/GEO/series/GSE3844.yaml +11 -0
  379. data/install_scripts/GEO/series/GSE3853.yaml +31 -0
  380. data/install_scripts/GEO/series/GSE3935.yaml +12 -0
  381. data/install_scripts/GEO/series/GSE3969.yaml +14 -0
  382. data/install_scripts/GEO/series/GSE4049.yaml +80 -0
  383. data/install_scripts/GEO/series/GSE4144.yaml +9 -0
  384. data/install_scripts/GEO/series/GSE4261.yaml +59 -0
  385. data/install_scripts/GEO/series/GSE4295.yaml +63 -0
  386. data/install_scripts/GEO/series/GSE4398.yaml +50 -0
  387. data/install_scripts/GEO/series/GSE4719.yaml +76 -0
  388. data/install_scripts/GEO/series/GSE4720.yaml +78 -0
  389. data/install_scripts/GEO/series/GSE4721.yaml +14 -0
  390. data/install_scripts/GEO/series/GSE4807.yaml +67 -0
  391. data/install_scripts/GEO/series/GSE4826.yaml +39 -0
  392. data/install_scripts/GEO/series/GSE4934.yaml +23 -0
  393. data/install_scripts/GEO/series/GSE5027.yaml +31 -0
  394. data/install_scripts/GEO/series/GSE5070.yaml +25 -0
  395. data/install_scripts/GEO/series/GSE5238.yaml +31 -0
  396. data/install_scripts/GEO/series/GSE5267.yaml +55 -0
  397. data/install_scripts/GEO/series/GSE5281.yaml +492 -0
  398. data/install_scripts/GEO/series/GSE5290.yaml +24 -0
  399. data/install_scripts/GEO/series/GSE5376.yaml +107 -0
  400. data/install_scripts/GEO/series/GSE5575.yaml +13 -0
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  404. data/install_scripts/GEO/series/GSE5938.yaml +187 -0
  405. data/install_scripts/GEO/series/GSE600.yaml +29 -0
  406. data/install_scripts/GEO/series/GSE6018.yaml +55 -0
  407. data/install_scripts/GEO/series/GSE6066.yaml +20 -0
  408. data/install_scripts/GEO/series/GSE6067.yaml +31 -0
  409. data/install_scripts/GEO/series/GSE6068.yaml +55 -0
  410. data/install_scripts/GEO/series/GSE6070.yaml +31 -0
  411. data/install_scripts/GEO/series/GSE6071.yaml +30 -0
  412. data/install_scripts/GEO/series/GSE6072.yaml +37 -0
  413. data/install_scripts/GEO/series/GSE6101.yaml +26 -0
  414. data/install_scripts/GEO/series/GSE6111.yaml +20 -0
  415. data/install_scripts/GEO/series/GSE6190.yaml +30 -0
  416. data/install_scripts/GEO/series/GSE6277.yaml +19 -0
  417. data/install_scripts/GEO/series/GSE6331.yaml +51 -0
  418. data/install_scripts/GEO/series/GSE6346.yaml +49 -0
  419. data/install_scripts/GEO/series/GSE6358.yaml +22 -0
  420. data/install_scripts/GEO/series/GSE6405.yaml +36 -0
  421. data/install_scripts/GEO/series/GSE6450.yaml +51 -0
  422. data/install_scripts/GEO/series/GSE6687.yaml +15 -0
  423. data/install_scripts/GEO/series/GSE6705.yaml +19 -0
  424. data/install_scripts/GEO/series/GSE6801.yaml +27 -0
  425. data/install_scripts/GEO/series/GSE6847.yaml +18 -0
  426. data/install_scripts/GEO/series/GSE6870.yaml +23 -0
  427. data/install_scripts/GEO/series/GSE7103.yaml +28 -0
  428. data/install_scripts/GEO/series/GSE7140.yaml +19 -0
  429. data/install_scripts/GEO/series/GSE7188.yaml +23 -0
  430. data/install_scripts/GEO/series/GSE7261.yaml +16 -0
  431. data/install_scripts/GEO/series/GSE7337.yaml +19 -0
  432. data/install_scripts/GEO/series/GSE7338.yaml +19 -0
  433. data/install_scripts/GEO/series/GSE7362.yaml +123 -0
  434. data/install_scripts/GEO/series/GSE7369.yaml +15 -0
  435. data/install_scripts/GEO/series/GSE7525.yaml +33 -0
  436. data/install_scripts/GEO/series/GSE7537.yaml +27 -0
  437. data/install_scripts/GEO/series/GSE7645.yaml +152 -0
  438. data/install_scripts/GEO/series/GSE7660.yaml +41 -0
  439. data/install_scripts/GEO/series/GSE7820.yaml +30 -0
  440. data/install_scripts/GEO/series/GSE79.yaml +32 -0
  441. data/install_scripts/GEO/series/GSE8035.yaml +19 -0
  442. data/install_scripts/GEO/series/GSE8088.yaml +13 -0
  443. data/install_scripts/GEO/series/GSE8089.yaml +19 -0
  444. data/install_scripts/GEO/series/GSE8111.yaml +15 -0
  445. data/install_scripts/GEO/series/GSE8237.yaml +35 -0
  446. data/install_scripts/GEO/series/GSE8326.yaml +37 -0
  447. data/install_scripts/GEO/series/GSE8399.yaml +13 -0
  448. data/install_scripts/GEO/series/GSE850.yaml +15 -0
  449. data/install_scripts/GEO/series/GSE8506.yaml +32 -0
  450. data/install_scripts/GEO/series/GSE8542.yaml +47 -0
  451. data/install_scripts/GEO/series/GSE8558.yaml +19 -0
  452. data/install_scripts/GEO/series/GSE8559.yaml +47 -0
  453. data/install_scripts/GEO/series/GSE8613.yaml +19 -0
  454. data/install_scripts/GEO/series/GSE8629.yaml +18 -0
  455. data/install_scripts/GEO/series/GSE8729.yaml +19 -0
  456. data/install_scripts/GEO/series/GSE8761.yaml +55 -0
  457. data/install_scripts/GEO/series/GSE8765.yaml +15 -0
  458. data/install_scripts/GEO/series/GSE8805.yaml +64 -0
  459. data/install_scripts/GEO/series/GSE8825.yaml +79 -0
  460. data/install_scripts/GEO/series/GSE8895.yaml +31 -0
  461. data/install_scripts/GEO/series/GSE8897.yaml +17 -0
  462. data/install_scripts/GEO/series/GSE8898.yaml +18 -0
  463. data/install_scripts/GEO/series/GSE8900.yaml +43 -0
  464. data/install_scripts/GEO/series/GSE8982.yaml +106 -0
  465. data/install_scripts/GEO/series/GSE920.yaml +20 -0
  466. data/install_scripts/GEO/series/GSE960.yaml +10 -0
  467. data/install_scripts/GEO/series/GSE961.yaml +14 -0
  468. data/install_scripts/GEO/series/GSE962.yaml +20 -0
  469. data/install_scripts/GEO/series/GSE963.yaml +14 -0
  470. data/install_scripts/GEO/series/GSE964.yaml +14 -0
  471. data/install_scripts/GEO/series/GSE965.yaml +14 -0
  472. data/install_scripts/GEO/series/GSE966.yaml +14 -0
  473. data/install_scripts/GEO/series/GSE993.yaml +9 -0
  474. data/lib/MARQ.rb +79 -0
  475. data/lib/MARQ/CustomDS.rb +99 -0
  476. data/lib/MARQ/GEO.rb +588 -0
  477. data/lib/MARQ/ID.rb +144 -0
  478. data/lib/MARQ/MADB.rb +238 -0
  479. data/lib/MARQ/annotations.rb +740 -0
  480. data/lib/MARQ/fdr.rb +177 -0
  481. data/lib/MARQ/main.rb +227 -0
  482. data/lib/MARQ/rankproduct.rb +146 -0
  483. data/lib/MARQ/score.rb +395 -0
  484. data/tasks/install.rake +21 -0
  485. metadata +588 -0
@@ -0,0 +1,13 @@
1
+ ---
2
+ :description: The Snf1 kinase plays a critical role in recalibrating cellular metabolism in response to glucose depletion. Hundreds of genes show changes in expression levels when the SNF1 gene is deleted. However, cells can adapt to the absence of a specific gene when grown in long term culture. Here we apply a chemical genetic method to rapidly and selectively inactivate a modified Snf1 kinase using a pyrazolopyrimidine inhibitor. By allowing cells to adjust to a change in carbon source prior to inhibition of the Snf1 kinase activity, we identified a set of genes whose expression increased when Snf1 was inhibited. Prominent in this set are genes that are activated by Gcn4, a transcriptional activator of amino acid biosynthetic genes. Deletion of Snf1 increased Gcn4 protein levels without affecting its mRNA levels. The increased Gcn4 protein levels required the Gcn2 kinase and Gcn20, regulators of GCN4 translation. These data indicate that Snf1 functions upstream of Gcn20 to regulate control of GCN4 translation.
3
+ :arrays:
4
+ GSM304531:
5
+ condition: Snf1-I132G 2NMPP1_Raffinose
6
+ GSM304520:
7
+ condition: Snf1-I132G 2NMPP1_Raffinose
8
+ GSM304532:
9
+ condition: Snf1 2NMPP1_Raffinose
10
+ GSM304521:
11
+ condition: Snf1 2NMPP1_Raffinose
12
+ :title: Chemical genomics study of Snf1 as a gene repressor
13
+ :platform: GPL90
@@ -0,0 +1,10 @@
1
+ ---
2
+ :description: "GSM306248: S. cerevisiae was grown on YEPD. Wild type and msg5 yeast cells were grown overnight at 24 \xC2\xB0C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 \xC2\xB0C for 4hours. After 4 hours of growth cells were collected, frozen at -80 \xC2\xB0C and processed for RNA extraction.\n\
3
+ GSM306249: msg5 yeast cells were grown overnight at 24 \xC2\xB0C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 \xC2\xB0C for 4hours. After 4 hours the culture was divided into two parts. One was treated with alpha factor and the other part was allow to grow without any treatment. After 90 minutes of treatment, both cultures of cells were collected, frozen at -80 \xC2\xB0C and processed for RNA extraction."
4
+ :arrays:
5
+ GSM306248:
6
+ condition: msg5-wt
7
+ GSM306249:
8
+ condition: msg5 f.alpha
9
+ :title: Transcriptional profiles of msg5 mutants and msg5 mutants in the presence/absence of alpha factor
10
+ :platform: GPL7054
@@ -0,0 +1,13 @@
1
+ ---
2
+ :description: "Yeast Mrc1, ortholog of metazoan Claspin, is both a central component of normal DNA replication forks and a mediator of the S phase checkpoint. We report that Mrc1 interacts with Pol2, the catalytic subunit of DNA polymerase \xCE\xB5, essential for leading strand DNA replication and for the checkpoint. In unperturbed cells, Mrc1 interacts independently with both the N-terminal and C-terminal halves of Pol2 (Pol2N and Pol2C). Strikingly, phosphorylation of Mrc1 during the S phase checkpoint abolishes Pol2N binding but not Pol2C interaction. Mrc1 is required to stabilize Pol2 at replication forks stalled in HU. The bimodal Mrc1/Pol2 interaction may identify a novel step in regulating the S phase checkpoint response to DNA damage on the leading strand. We propose that Mrc1, which also interacts with the MCMs, may modulate coupling of polymerization and unwinding at the replication fork."
3
+ :arrays:
4
+ GSM305880:
5
+ condition: DNAPol2-mrc1
6
+ GSM305879:
7
+ condition: DNAPol2-HU
8
+ GSM305881:
9
+ condition: DNAPol2-tof1
10
+ GSM305882:
11
+ condition: WCE-HU
12
+ :title: "Mrc1 and DNA polymerase \xCE\xB5 function together in linking DNA replication and the S phase checkpoint"
13
+ :platform: GPL347
@@ -0,0 +1,32 @@
1
+ ---
2
+ :title: Expression data from yeast with Anc1p or without under basal or MMS exposed conditions
3
+ :description: |-
4
+ We are investigating the transcriptional response of Anc1 deficient yeast under basal and MMS exposed conditions
5
+ We used microarrays to detail the global programme of gene expression underlying the MMS response in WT and Anc1 deficient yeast
6
+ Keywords: dose
7
+ :arrays:
8
+ GSM306027:
9
+ treatment: anc1.treat
10
+ GSM306028:
11
+ treatment: anc1.untreat
12
+ GSM306029:
13
+ treatment: anc1.treat
14
+ GSM306018:
15
+ treatment: wt.untreat
16
+ GSM306020:
17
+ treatment: wt.untreat
18
+ GSM306019:
19
+ treatment: wt.treat
20
+ GSM306021:
21
+ treatment: wt.treat
22
+ GSM306022:
23
+ treatment: wt.untreat
24
+ GSM306023:
25
+ treatment: wt.treat
26
+ GSM306024:
27
+ treatment: anc1.untreat
28
+ GSM306025:
29
+ treatment: anc1.treat
30
+ GSM306026:
31
+ treatment: anc1.untreat
32
+ :platform: GPL90
@@ -0,0 +1,47 @@
1
+ ---
2
+ :title: hog1, slt2, rlm1, and msn2/4 mutants exposed to zymolyase
3
+ :description: |-
4
+ This SuperSeries is composed of the following subset Series:
5
+ GSE9930: Wild type 3 hour exposure to zymolyase
6
+ GSE9931: hog1 mutant 3 hour exposure to zymolyase
7
+ GSE9932: slt2 mutant 3 hour exposure to zymolyase
8
+ GSE9933: rlm1 mutant 3 hour exposure to zymolyase
9
+ GSE9934: msn2/4 mutant 3 hour exposure to zymolyase
10
+ :arrays:
11
+ GSM249126:
12
+ treatment: rlm1 3h zym
13
+ GSM249104:
14
+ treatment: slt2 3h zym
15
+ GSM248994:
16
+ treatment: wt 3h zym
17
+ GSM249127:
18
+ treatment: msn2/4 3h zym
19
+ GSM249105:
20
+ treatment: rlm1 3h zym
21
+ GSM248995:
22
+ treatment: wt 3h zym
23
+ GSM249128:
24
+ treatment: msn2/4 3h zym
25
+ GSM249106:
26
+ treatment: rlm1 3h zym
27
+ GSM249086:
28
+ treatment: hog1 3h zym
29
+ GSM249020:
30
+ treatment: wt 3h zym
31
+ GSM249098:
32
+ treatment: hog1 3h zym
33
+ GSM249099:
34
+ treatment: slt2 3h zym
35
+ GSM249088:
36
+ treatment: hog1 3h zym
37
+ GSM249101:
38
+ treatment: slt2 3h zym
39
+ GSM249091:
40
+ treatment: hog1 3h zym
41
+ GSM249125:
42
+ treatment: rlm1 3h zym
43
+ GSM249103:
44
+ treatment: slt2 3h zym
45
+ GSM248993:
46
+ treatment: wt 3h zym
47
+ :platform: GPL7054
@@ -0,0 +1,34 @@
1
+ ---
2
+ :arrays:
3
+ GSM318317:
4
+ disease: incipient Alzheimer
5
+ GSM318320:
6
+ disease: incipient Alzheimer
7
+ GSM318442:
8
+ disease: incipient Alzheimer
9
+ GSM318321:
10
+ disease: incipient Alzheimer
11
+ GSM318310:
12
+ disease: control
13
+ GSM318211:
14
+ disease: control
15
+ GSM318443:
16
+ disease: incipient Alzheimer
17
+ GSM318311:
18
+ disease: control
19
+ GSM318212:
20
+ disease: control
21
+ GSM318312:
22
+ disease: control
23
+ GSM318213:
24
+ disease: control
25
+ GSM318445:
26
+ disease: incipient Alzheimer
27
+ GSM318313:
28
+ disease: control
29
+ GSM318314:
30
+ disease: control
31
+ :description: "In Alzheimer\xE2\x80\x99s disease (AD), early deficits in learning and memory are a consequence of synaptic modification which are likely induced by toxic beta-amyloid oligomers (oA\xCE\xB2). To identify molecular targets downstream of oA\xCE\xB2 binding we prepared synaptoneurosomes from frontal cortex of control and IAD patients, and isolated mRNAs for comparison of gene expression. This approach elevated synaptic mRNAs above the threshold necessary for expression changes to be discriminated and also reduced other cellular mRNAs. In patients with minimal cognitive impairment (MCI) termed incipient AD (IAD) global measures of cognition declined with increasing levels of dimeric A\xCE\xB2 (dA\xCE\xB2). These patients also showed increased expression of neuroplasticity related genes, many encoding 3' UTR consensus sequences that regulate local translation in the synapse. One such gene, GluR2, displayed elevated mRNA and protein expression in IAD. Other neurotransmitter-related genes were also upregulated. Overexpressed genes may induce compensatory as well as negative effects on cognition and provide targets for intervention to moderate the response to dA\xCE\xB2.\n\
32
+ !Series_overall_design = Patient information"
33
+ :title: Expression of mRNAs Regulating Synaptic Function and Neuroplasticity in Incipient AD
34
+ :platform: GPL96
@@ -0,0 +1,14 @@
1
+ ---
2
+ :title: TFB5 (YDR079c-a) Knockout Study
3
+ :arrays:
4
+ GSM22072:
5
+ condition: tfb5/wt
6
+ GSM22073:
7
+ condition: tfb5/wt
8
+ GSM22074:
9
+ condition: wt/wt
10
+ :description: |-
11
+ RNA expression analysis of polyA+ RNA isolated from a TFB5 (YDR079c-a) deletion strain and an isogenic wild type strain.
12
+ Comparison of RNA expression levels in TFB5 deletion strain compared to a wild type strain at 30C in YPD medium
13
+ Keywords: repeat sample
14
+ :platform: GPL1214
@@ -0,0 +1,596 @@
1
+ ---
2
+ :title: Exploration of essential gene functions via titratable promoter alleles
3
+ :description: |-
4
+ Exploration of essential gene functions via titratable promoter alleles.
5
+ Collection of microarray experiments described in Mnaimneh et al. 2004.
6
+ Keywords = Yeast
7
+ Keywords = Saccharomyces cerevisiae
8
+ Keywords = oligonucleotide
9
+ Keywords = dual channel
10
+ Keywords: other
11
+ :arrays:
12
+ GSM23004:
13
+ mutant: YOR110W TET_mutant
14
+ GSM23030:
15
+ mutant: YGL047W TET_mutant
16
+ GSM22788:
17
+ mutant: YBR243C TET_mutant
18
+ GSM22869:
19
+ mutant: YLR060W TET_mutant
20
+ GSM22895:
21
+ mutant: YLR106C TET_mutant
22
+ GSM22976:
23
+ mutant: YIR022W TET_mutant
24
+ GSM23031:
25
+ mutant: YGL047W TET_mutant
26
+ GSM23005:
27
+ mutant: YPL063W TET_mutant
28
+ GSM22789:
29
+ mutant: YPR180W TET_mutant
30
+ GSM22896:
31
+ mutant: YLR106C TET_mutant
32
+ GSM22977:
33
+ mutant: YMR079W TET_mutant
34
+ GSM23032:
35
+ mutant: YGL245W TET_mutant
36
+ GSM23006:
37
+ mutant: YNL131W TET_mutant
38
+ GSM22897:
39
+ mutant: YBR193C TET_mutant
40
+ GSM22978:
41
+ mutant: YNL272C TET_mutant
42
+ GSM23033:
43
+ mutant: YGR094W TET_mutant
44
+ GSM23007:
45
+ mutant: YHR070W TET_mutant
46
+ GSM22898:
47
+ mutant: YOR232W TET_mutant
48
+ GSM22979:
49
+ mutant: YFL005W TET_mutant
50
+ GSM23060:
51
+ mutant: YLR076C TET_mutant
52
+ GSM23034:
53
+ mutant: YGR173W TET_mutant
54
+ GSM22899:
55
+ mutant: YIL106W TET_mutant
56
+ GSM23008:
57
+ mutant: YCR042C TET_mutant
58
+ GSM23061:
59
+ mutant: YLR101C TET_mutant
60
+ GSM23035:
61
+ mutant: YGR198W TET_mutant
62
+ GSM23009:
63
+ mutant: YDL060W TET_mutant
64
+ GSM23062:
65
+ mutant: YLR145W TET_mutant
66
+ GSM23036:
67
+ mutant: YGR198W TET_mutant
68
+ GSM23063:
69
+ mutant: YLR243W TET_mutant
70
+ GSM23037:
71
+ mutant: YGR198W TET_mutant
72
+ GSM22900:
73
+ mutant: YJR002W TET_mutant
74
+ GSM23090:
75
+ mutant: YOR145C TET_mutant
76
+ GSM23064:
77
+ mutant: YLR310C TET_mutant
78
+ GSM23038:
79
+ mutant: YGR251W TET_mutant
80
+ GSM22820:
81
+ mutant: YDL031W TET_mutant
82
+ GSM22901:
83
+ mutant: YAL034W-A TET_mutant
84
+ GSM23091:
85
+ mutant: YOR146W TET_mutant
86
+ GSM23065:
87
+ mutant: YLR359W TET_mutant
88
+ GSM23039:
89
+ mutant: YGR251W TET_mutant
90
+ GSM22821:
91
+ mutant: YDL031W TET_mutant
92
+ GSM22902:
93
+ mutant: YNR043W TET_mutant
94
+ GSM23092:
95
+ mutant: YOR169C TET_mutant
96
+ GSM23066:
97
+ mutant: YLR424W TET_mutant
98
+ GSM22822:
99
+ mutant: YOR204W TET_mutant
100
+ GSM22903:
101
+ mutant: YHR023W TET_mutant
102
+ GSM23093:
103
+ mutant: YOR206W TET_mutant
104
+ GSM23067:
105
+ mutant: YLR440C TET_mutant
106
+ GSM22823:
107
+ mutant: YOR236W TET_mutant
108
+ GSM22904:
109
+ mutant: YGL122C TET_mutant
110
+ GSM22930:
111
+ mutant: YAL033W TET_mutant
112
+ GSM23094:
113
+ mutant: YOR259C TET_mutant
114
+ GSM23068:
115
+ mutant: YLR440C TET_mutant
116
+ GSM22824:
117
+ mutant: YDR141C TET_mutant
118
+ GSM22905:
119
+ mutant: YGL122C TET_mutant
120
+ GSM22931:
121
+ mutant: YER023W TET_mutant
122
+ GSM23095:
123
+ mutant: YPR169W TET_mutant
124
+ GSM23069:
125
+ mutant: YHR090C TET_mutant
126
+ GSM22825:
127
+ mutant: YDR141C TET_mutant
128
+ GSM22906:
129
+ mutant: YGL122C TET_mutant
130
+ GSM22932:
131
+ mutant: YKR086W TET_mutant
132
+ GSM23096:
133
+ mutant: YGR103W TET_mutant
134
+ GSM22826:
135
+ mutant: YIL003W TET_mutant
136
+ GSM22907:
137
+ mutant: YPL190C TET_mutant
138
+ GSM22933:
139
+ mutant: YPR178W TET_mutant
140
+ GSM23097:
141
+ mutant: YFR037C TET_mutant
142
+ GSM22827:
143
+ mutant: YNL258C TET_mutant
144
+ GSM22934:
145
+ mutant: YDL055C TET_mutant
146
+ GSM22960:
147
+ mutant: YKL082C TET_mutant
148
+ GSM23098:
149
+ mutant: YER006W TET_mutant
150
+ GSM22828:
151
+ mutant: YNL258C TET_mutant
152
+ GSM22880:
153
+ mutant: YOL133W TET_mutant
154
+ GSM22908:
155
+ mutant: YNL124W TET_mutant
156
+ GSM22935:
157
+ mutant: YJL072C TET_mutant
158
+ GSM22961:
159
+ mutant: YGR095C TET_mutant
160
+ GSM23099:
161
+ mutant: YGR198W TET_mutant
162
+ GSM22881:
163
+ mutant: YGL073W TET_mutant
164
+ GSM22909:
165
+ mutant: YPL126W TET_mutant
166
+ GSM22936:
167
+ mutant: YAL043C TET_mutant
168
+ GSM22962:
169
+ mutant: YOR294W TET_mutant
170
+ GSM22829:
171
+ mutant: YMR128W TET_mutant
172
+ GSM22882:
173
+ mutant: YGL073W TET_mutant
174
+ GSM22937:
175
+ mutant: YLR196W TET_mutant
176
+ GSM22963:
177
+ mutant: YFR037C TET_mutant
178
+ GSM22883:
179
+ mutant: YGL073W TET_mutant
180
+ GSM22938:
181
+ mutant: YPR186C TET_mutant
182
+ GSM22964:
183
+ mutant: YBL020W TET_mutant
184
+ GSM22990:
185
+ mutant: YLR147C TET_mutant
186
+ GSM22884:
187
+ mutant: YPR033C TET_mutant
188
+ GSM22939:
189
+ mutant: YBR049C TET_mutant
190
+ GSM22965:
191
+ mutant: YFR037C TET_mutant
192
+ GSM22991:
193
+ mutant: YDR201W TET_mutant
194
+ GSM22966:
195
+ mutant: YOR077W TET_mutant
196
+ GSM22992:
197
+ mutant: YDR201W TET_mutant
198
+ GSM23020:
199
+ mutant: YBR190W TET_mutant
200
+ GSM22885:
201
+ mutant: YHR085W TET_mutant
202
+ GSM22967:
203
+ mutant: YOR077W TET_mutant
204
+ GSM22993:
205
+ mutant: YKR037C TET_mutant
206
+ GSM23021:
207
+ mutant: YCR013C TET_mutant
208
+ GSM22886:
209
+ mutant: YHR085W TET_mutant
210
+ GSM22968:
211
+ mutant: YOR077W TET_mutant
212
+ GSM22994:
213
+ mutant: YDR464W TET_mutant
214
+ GSM23022:
215
+ mutant: YDL196W TET_mutant
216
+ GSM22887:
217
+ mutant: YHR197W TET_mutant
218
+ GSM23104:
219
+ mutant: TAP-YGL245W
220
+ GSM22969:
221
+ mutant: YOR077W TET_mutant
222
+ GSM22995:
223
+ mutant: YIR012W TET_mutant
224
+ GSM23023:
225
+ mutant: YDR327W TET_mutant
226
+ GSM22888:
227
+ mutant: YDR062W TET_mutant
228
+ GSM23050:
229
+ mutant: YKL033W TET_mutant
230
+ GSM22996:
231
+ mutant: YPL243W TET_mutant
232
+ GSM23024:
233
+ mutant: YDR365C TET_mutant
234
+ GSM22889:
235
+ mutant: YER112W TET_mutant
236
+ GSM23051:
237
+ mutant: YKL033W TET_mutant
238
+ GSM22997:
239
+ mutant: YLR005W TET_mutant
240
+ GSM23025:
241
+ mutant: YDR365C TET_mutant
242
+ GSM23052:
243
+ mutant: YKL052C TET_mutant
244
+ GSM22998:
245
+ mutant: YLR005W TET_mutant
246
+ GSM23026:
247
+ mutant: YDR412W TET_mutant
248
+ GSM23053:
249
+ mutant: YKL180W TET_mutant
250
+ GSM23027:
251
+ mutant: YDR412W TET_mutant
252
+ GSM22999:
253
+ mutant: YNL222W TET_mutant
254
+ GSM23080:
255
+ mutant: YNL313C TET_mutant
256
+ GSM23054:
257
+ mutant: YKR079C TET_mutant
258
+ GSM23028:
259
+ mutant: YDR527W TET_mutant
260
+ GSM22810:
261
+ mutant: YJL194W TET_mutant
262
+ GSM23081:
263
+ mutant: YNL313C TET_mutant
264
+ GSM23055:
265
+ mutant: YLJ097W TET_mutant
266
+ GSM23029:
267
+ mutant: YDR527W TET_mutant
268
+ GSM22811:
269
+ mutant: YLR459W TET_mutant
270
+ GSM23082:
271
+ mutant: YNR054C TET_mutant
272
+ GSM23056:
273
+ mutant: YLL034C TET_mutant
274
+ GSM22812:
275
+ mutant: YBR029C TET_mutant
276
+ GSM23083:
277
+ mutant: YNR054C TET_mutant
278
+ GSM23057:
279
+ mutant: YLL034C TET_mutant
280
+ GSM22813:
281
+ mutant: YBR029C TET_mutant
282
+ GSM22920:
283
+ mutant: YER006W TET_mutant
284
+ GSM23084:
285
+ mutant: YOL022C TET_mutant
286
+ GSM23058:
287
+ mutant: YLR008C TET_mutant
288
+ GSM22814:
289
+ mutant: YMR213W TET_mutant
290
+ GSM22921:
291
+ mutant: YJL039C TET_mutant
292
+ GSM23085:
293
+ mutant: YOL026C TET_mutant
294
+ GSM23059:
295
+ mutant: YLR008C TET_mutant
296
+ GSM22815:
297
+ mutant: YPL228W TET_mutant
298
+ GSM22922:
299
+ mutant: YJL061W TET_mutant
300
+ GSM23086:
301
+ mutant: YOL026C TET_mutant
302
+ GSM22816:
303
+ mutant: YPR105C TET_mutant
304
+ GSM22923:
305
+ mutant: YHR118C TET_mutant
306
+ GSM23087:
307
+ mutant: YOR004W TET_mutant
308
+ GSM22762:
309
+ mutant: YMR001C TET_mutant
310
+ GSM22817:
311
+ mutant: YGR278W TET_mutant
312
+ GSM22924:
313
+ mutant: YMR076C TET_mutant
314
+ GSM22950:
315
+ mutant: YMR239C TET_mutant
316
+ GSM23088:
317
+ mutant: YOR004W TET_mutant
318
+ GSM22818:
319
+ mutant: YNL245C TET_mutant
320
+ GSM22870:
321
+ mutant: YLR291C TET_mutant
322
+ GSM22925:
323
+ mutant: YBR196C TET_mutant
324
+ GSM22951:
325
+ mutant: YMR200W TET_mutant
326
+ GSM23089:
327
+ mutant: YOR060C TET_mutant
328
+ GSM22790:
329
+ mutant: YNR035C TET_mutant
330
+ GSM22819:
331
+ mutant: YNL245C TET_mutant
332
+ GSM22871:
333
+ mutant: YPL075W TET_mutant
334
+ GSM22926:
335
+ mutant: YOR281C TET_mutant
336
+ GSM22952:
337
+ mutant: YOL005C TET_mutant
338
+ GSM22791:
339
+ mutant: YBR234C TET_mutant
340
+ GSM22872:
341
+ mutant: YPL075W TET_mutant
342
+ GSM22927:
343
+ mutant: YBR088C TET_mutant
344
+ GSM22953:
345
+ mutant: YOL005C TET_mutant
346
+ GSM22792:
347
+ mutant: YJL081C TET_mutant
348
+ GSM22873:
349
+ mutant: YDL207W TET_mutant
350
+ GSM22928:
351
+ mutant: YEL055C TET_mutant
352
+ GSM22954:
353
+ mutant: YJL011C TET_mutant
354
+ GSM22980:
355
+ mutant: YLR378C TET_mutant
356
+ GSM22793:
357
+ mutant: YER172C TET_mutant
358
+ GSM22874:
359
+ mutant: YOR168W TET_mutant
360
+ GSM22929:
361
+ mutant: YNL221C TET_mutant
362
+ GSM22955:
363
+ mutant: YOL038W TET_mutant
364
+ GSM22981:
365
+ mutant: YLL003W TET_mutant
366
+ GSM22794:
367
+ mutant: YHR040W TET_mutant
368
+ GSM22875:
369
+ mutant: YHR188C TET_mutant
370
+ GSM22956:
371
+ mutant: YOR261C TET_mutant
372
+ GSM22982:
373
+ mutant: YLR336C TET_mutant
374
+ GSM23010:
375
+ mutant: YKL210W TET_mutant
376
+ GSM22795:
377
+ mutant: YER172C TET_mutant
378
+ GSM22876:
379
+ mutant: YPL076W TET_mutant
380
+ GSM22957:
381
+ mutant: YDL007W TET_mutant
382
+ GSM22983:
383
+ mutant: YDL047W TET_mutant
384
+ GSM23011:
385
+ mutant: YKL210W TET_mutant
386
+ GSM22796:
387
+ mutant: YOL077C TET_mutant
388
+ GSM22877:
389
+ mutant: YLL035W TET_mutant
390
+ GSM22958:
391
+ mutant: YKL125W TET_mutant
392
+ GSM22984:
393
+ mutant: YKL108W TET_mutant
394
+ GSM23012:
395
+ mutant: YKL210W TET_mutant
396
+ GSM22797:
397
+ mutant: YJR076C TET_mutant
398
+ GSM22878:
399
+ mutant: YMR290C TET_mutant
400
+ GSM22959:
401
+ mutant: YKL082C TET_mutant
402
+ GSM22985:
403
+ mutant: YDR489W TET_mutant
404
+ GSM23013:
405
+ mutant: YDL064W TET_mutant
406
+ GSM23040:
407
+ mutant: YGR280C TET_mutant
408
+ GSM22798:
409
+ mutant: YAL038W TET_mutant
410
+ GSM22879:
411
+ mutant: YDR047W TET_mutant
412
+ GSM22986:
413
+ mutant: YIL147C TET_mutant
414
+ GSM23014:
415
+ mutant: YGR048W TET_mutant
416
+ GSM23041:
417
+ mutant: YHR122W TET_mutant
418
+ GSM22799:
419
+ mutant: YGL116W TET_mutant
420
+ GSM22987:
421
+ mutant: YLR086W TET_mutant
422
+ GSM23015:
423
+ mutant: YBL004W TET_mutant
424
+ GSM23042:
425
+ mutant: YHR122W TET_mutant
426
+ GSM22988:
427
+ mutant: YLR275W TET_mutant
428
+ GSM23016:
429
+ mutant: YGR090W TET_mutant
430
+ GSM23043:
431
+ mutant: YHR122W TET_mutant
432
+ GSM22989:
433
+ mutant: YLR147C TET_mutant
434
+ GSM23017:
435
+ mutant: YGR090W TET_mutant
436
+ GSM23070:
437
+ mutant: YNL149C TET_mutant
438
+ GSM23044:
439
+ mutant: YGR172C TET_mutant
440
+ GSM23018:
441
+ mutant: YGR090W TET_mutant
442
+ GSM22800:
443
+ mutant: YBL084C TET_mutant
444
+ GSM23071:
445
+ mutant: YNL149C TET_mutant
446
+ GSM23045:
447
+ mutant: YJL009W TET_mutant
448
+ GSM23019:
449
+ mutant: YBR190W TET_mutant
450
+ GSM22801:
451
+ mutant: YDR054C TET_mutant
452
+ GSM23072:
453
+ mutant: YNL150W TET_mutant
454
+ GSM23046:
455
+ mutant: YJL091C TET_mutant
456
+ GSM22802:
457
+ mutant: YDR054C TET_mutant
458
+ GSM23073:
459
+ mutant: YNL158W TET_mutant
460
+ GSM23047:
461
+ mutant: YJL097W TET_mutant
462
+ GSM22910:
463
+ mutant: YLR457C TET_mutant
464
+ GSM22803:
465
+ mutant: YDR168W TET_mutant
466
+ GSM23074:
467
+ mutant: YNL158W TET_mutant
468
+ GSM23048:
469
+ mutant: YJR041C TET_mutant
470
+ GSM22911:
471
+ mutant: YML031W TET_mutant
472
+ GSM22804:
473
+ mutant: YLR229C TET_mutant
474
+ GSM22830:
475
+ mutant: YAL003W TET_mutant
476
+ GSM23075:
477
+ mutant: YNL182C TET_mutant
478
+ GSM23049:
479
+ mutant: YJR041C TET_mutant
480
+ GSM22805:
481
+ mutant: YLR229C TET_mutant
482
+ GSM22831:
483
+ mutant: YGR060W TET_mutant
484
+ GSM22912:
485
+ mutant: YOR372C TET_mutant
486
+ GSM23076:
487
+ mutant: YNL247W TET_mutant
488
+ GSM22806:
489
+ mutant: YGL155W TET_mutant
490
+ GSM22832:
491
+ mutant: YFL024C TET_mutant
492
+ GSM22913:
493
+ mutant: YCL017C TET_mutant
494
+ GSM23077:
495
+ mutant: YNL310C TET_mutant
496
+ GSM22807:
497
+ mutant: YGL155W TET_mutant
498
+ GSM22833:
499
+ mutant: YBL040C TET_mutant
500
+ GSM22914:
501
+ mutant: YPR144C TET_mutant
502
+ GSM22940:
503
+ mutant: YBR002C TET_mutant
504
+ GSM23078:
505
+ mutant: YNL313C TET_mutant
506
+ GSM22808:
507
+ mutant: YPR019W TET_mutant
508
+ GSM22834:
509
+ mutant: YGR175C TET_mutant
510
+ GSM22915:
511
+ mutant: YPL093W TET_mutant
512
+ GSM22941:
513
+ mutant: YPL010W TET_mutant
514
+ GSM23079:
515
+ mutant: YNL313C TET_mutant
516
+ GSM22835:
517
+ mutant: YGR060W TET_mutant
518
+ GSM22916:
519
+ mutant: YNR053C TET_mutant
520
+ GSM22942:
521
+ mutant: YBR192W TET_mutant
522
+ GSM22781:
523
+ mutant: YDL132W TET_mutant
524
+ GSM22809:
525
+ mutant: YPR019W TET_mutant
526
+ GSM22836:
527
+ mutant: YML130C TET_mutant
528
+ GSM22917:
529
+ mutant: YGR103W TET_mutant
530
+ GSM22943:
531
+ mutant: YOR119C TET_mutant
532
+ GSM22782:
533
+ mutant: YML046W TET_mutant
534
+ GSM22837:
535
+ mutant: YPL231W TET_mutant
536
+ GSM22918:
537
+ mutant: YLR007W TET_mutant
538
+ GSM22944:
539
+ mutant: YOR095C TET_mutant
540
+ GSM22970:
541
+ mutant: YOR077W TET_mutant
542
+ GSM22783:
543
+ mutant: YGR198W TET_mutant
544
+ GSM22890:
545
+ mutant: YER112W TET_mutant
546
+ GSM22945:
547
+ mutant: YDR091C TET_mutant
548
+ GSM22971:
549
+ mutant: YHR205W TET_mutant
550
+ GSM23000:
551
+ mutant: YNL222W TET_mutant
552
+ GSM22784:
553
+ mutant: YBL020W TET_mutant
554
+ GSM22891:
555
+ mutant: YDL087C TET_mutant
556
+ GSM22919:
557
+ mutant: YER006W TET_mutant
558
+ GSM22946:
559
+ mutant: YMR235C TET_mutant
560
+ GSM22972:
561
+ mutant: YHR205W TET_mutant
562
+ GSM23001:
563
+ mutant: YJR007W TET_mutant
564
+ GSM22785:
565
+ mutant: YGL048C TET_mutant
566
+ GSM22892:
567
+ mutant: YBR142W TET_mutant
568
+ GSM22947:
569
+ mutant: YMR235C TET_mutant
570
+ GSM22973:
571
+ mutant: YHR205W TET_mutant
572
+ GSM23002:
573
+ mutant: YBR143C TET_mutant
574
+ GSM22786:
575
+ mutant: YOR262W TET_mutant
576
+ GSM22867:
577
+ mutant: YDR373W TET_mutant
578
+ GSM22893:
579
+ mutant: YLR163C TET_mutant
580
+ GSM22948:
581
+ mutant: YMR239C TET_mutant
582
+ GSM22974:
583
+ mutant: YGR245C TET_mutant
584
+ GSM23003:
585
+ mutant: YKL018W TET_mutant
586
+ GSM22787:
587
+ mutant: YOR335C TET_mutant
588
+ GSM22868:
589
+ mutant: YDR373W TET_mutant
590
+ GSM22894:
591
+ mutant: YMR043W TET_mutant
592
+ GSM22949:
593
+ mutant: YMR239C TET_mutant
594
+ GSM22975:
595
+ mutant: YGR245C TET_mutant
596
+ :platform: GPL1229